Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47261 * 2 1 4 4 C 1.46499 * 119.99803 * 274.34362 * 3 2 1 5 5 C 1.50696 * 109.47086 * 280.38610 * 4 3 2 6 6 H 1.07995 * 120.00101 * 3.96670 * 5 4 3 7 7 C 1.37880 * 119.99972 * 183.96162 * 5 4 3 8 8 N 1.31518 * 119.99995 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00148 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47253 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47287 * 120.00269 * 9 7 5 12 12 H 1.48506 * 109.47386 * 240.00396 * 9 7 5 13 13 S 1.65594 * 120.00179 * 94.34356 * 3 2 1 14 14 O 1.42106 * 106.40406 * 330.37745 * 13 3 2 15 15 O 1.42094 * 106.40341 * 197.45819 * 13 3 2 16 16 N 1.65601 * 107.22158 * 83.91413 * 13 3 2 17 17 C 1.46500 * 119.99465 * 64.58290 * 16 13 3 18 18 C 1.50705 * 109.46786 * 164.50169 * 17 16 13 19 19 N 1.30502 * 126.36879 * 89.97976 * 18 17 16 20 20 N 1.28575 * 109.66355 * 179.97438 * 19 18 17 21 21 C 1.30679 * 109.63731 * 359.95807 * 20 19 18 22 22 N 1.35167 * 107.33172 * 0.13633 * 21 20 19 23 23 C 1.46799 * 111.15150 * 179.76201 * 22 21 20 24 24 C 1.54427 * 105.55736 * 17.05594 * 23 22 21 25 25 C 1.51335 * 142.71898 * 180.25711 * 21 20 19 26 26 H 1.08997 * 109.47332 * 185.08250 * 1 2 3 27 27 H 1.09000 * 109.46980 * 305.08499 * 1 2 3 28 28 H 1.09001 * 109.46971 * 65.08911 * 1 2 3 29 29 H 1.08996 * 109.47145 * 239.99671 * 2 1 3 30 30 H 1.09002 * 109.46498 * 119.99905 * 2 1 3 31 31 H 1.09001 * 109.47310 * 40.38702 * 4 3 2 32 32 H 1.08997 * 109.47095 * 160.38459 * 4 3 2 33 33 H 0.96994 * 119.99971 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00557 * 244.59126 * 16 13 3 35 35 H 1.08997 * 109.47584 * 44.50346 * 17 16 13 36 36 H 1.08997 * 109.47440 * 284.49860 * 17 16 13 37 37 H 1.08998 * 110.23295 * 136.07960 * 23 22 21 38 38 H 1.09003 * 110.23111 * 258.04015 * 23 22 21 39 39 H 1.09004 * 110.96111 * 92.51035 * 24 23 22 40 40 H 1.08994 * 110.96253 * 216.25263 * 24 23 22 41 41 H 1.08995 * 110.47734 * 44.74137 * 25 21 20 42 42 H 1.09007 * 110.57961 * 282.18620 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1720 2.1038 -1.2651 5 6 3.4553 1.6811 -1.9324 6 1 4.0608 0.9017 -1.4939 7 6 3.8565 2.2893 -3.1030 8 7 3.1194 3.2388 -3.6368 9 14 5.4469 1.7650 -3.9306 10 1 6.0860 0.6854 -3.1358 11 1 5.1522 1.2646 -5.2973 12 1 6.3669 2.9276 -4.0168 13 16 2.3968 2.1256 1.4299 14 8 1.5553 1.5475 2.4184 15 8 2.4331 3.5201 1.1591 16 7 3.9451 1.6842 1.8178 17 6 5.0598 2.0921 0.9592 18 6 6.3586 1.9088 1.7014 19 7 7.0987 0.8339 1.7122 20 7 8.1345 1.0293 2.4484 21 6 8.1019 2.2396 2.9402 22 7 6.9751 2.8298 2.4829 23 6 6.8510 4.2009 2.9925 24 6 8.2595 4.5846 3.4962 25 6 8.8661 3.2011 3.8243 26 1 -0.3634 -1.0236 0.0910 27 1 -0.3633 0.5907 0.8409 28 1 -0.3633 0.4329 -0.9321 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3302 1.8751 -1.9187 32 1 2.1998 3.1758 -1.0701 33 1 3.4018 3.6669 -4.4601 34 1 4.1139 1.1555 2.6133 35 1 4.9428 3.1405 0.6852 36 1 5.0670 1.4796 0.0576 37 1 6.5404 4.8735 2.1930 38 1 6.1351 4.2344 3.8137 39 1 8.8305 5.0849 2.7139 40 1 8.1983 5.2054 4.3899 41 1 9.9280 3.1826 3.5792 42 1 8.7141 2.9580 4.8760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336919922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = 11.909664 kcal Electronic energy + Delta-G solvation = -27282.736779 eV Core-core repulsion = 23426.470625 eV Total energy + Delta-G solvation = -3856.266154 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.41416 -37.44002 -36.77934 -36.09996 -35.34841 -35.29540 -32.75446 -32.19830 -29.98421 -29.95901 -28.16410 -26.68937 -25.64377 -23.18625 -22.82003 -21.75429 -21.12115 -20.83948 -19.00303 -17.45252 -17.30142 -16.90926 -16.55538 -16.05783 -15.81969 -15.24736 -14.94498 -14.62689 -14.21483 -13.85289 -13.73320 -13.51779 -13.41156 -13.18909 -13.06294 -12.82507 -12.10080 -12.04564 -12.01974 -11.79331 -11.73480 -11.69196 -11.53921 -11.38887 -11.31023 -11.09642 -10.93862 -10.56818 -10.41806 -10.34772 -10.15308 -10.04589 -9.84347 -9.25824 -9.09479 -8.54834 -8.11220 -6.16328 -4.23590 1.10597 1.76672 2.36966 2.80995 3.22616 3.32365 3.37142 3.48407 3.53767 4.00458 4.06418 4.27592 4.33309 4.34204 4.47306 4.96820 4.98850 5.03198 5.13181 5.17697 5.20872 5.33829 5.38521 5.49257 5.50904 5.70399 5.79021 5.86463 6.01136 6.08868 6.13612 6.17988 6.33808 6.65165 6.69694 6.76194 7.10663 7.32266 7.38753 7.61466 7.81053 8.10313 8.74344 8.82365 9.43494 10.91231 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.005251 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.139175 B = 5330.622265 C = 6865.555447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.989 5.989 4 C 0.242 3.758 5 C -0.543 4.543 6 H 0.067 0.933 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.283 1.283 13 S 2.786 3.214 14 O -0.994 6.994 15 O -0.978 6.978 16 N -1.129 6.129 17 C 0.208 3.792 18 C 0.197 3.803 19 N -0.271 5.271 20 N -0.282 5.282 21 C 0.149 3.851 22 N -0.486 5.486 23 C 0.097 3.903 24 C -0.129 4.129 25 C -0.038 4.038 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.410 0.590 35 H 0.098 0.902 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.662 2.316 13.720 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.831 5.831 4 C 0.120 3.880 5 C -0.583 4.583 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.209 1.209 13 S 2.794 3.206 14 O -0.978 6.978 15 O -0.961 6.961 16 N -0.887 5.887 17 C 0.080 3.920 18 C -0.070 4.070 19 N -0.111 5.111 20 N -0.123 5.123 21 C -0.119 4.119 22 N -0.179 5.179 23 C -0.025 4.025 24 C -0.167 4.167 25 C -0.078 4.078 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.242 0.758 35 H 0.116 0.884 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.361 1.772 13.488 15.017 hybrid contribution 0.755 0.507 -0.344 0.972 sum 7.116 2.279 13.143 15.119 Atomic orbital electron populations 1.22208 0.96865 1.01392 1.02419 1.20991 0.93645 0.82628 1.02321 1.57696 1.78429 1.23224 1.23780 1.19258 0.97357 0.92579 0.78848 1.21596 1.07147 1.20992 1.08516 0.91541 1.24934 0.97073 0.94669 0.96930 1.69942 1.37929 1.24417 1.20139 0.86626 0.83439 0.78856 0.79772 1.19166 1.20807 1.20946 1.01777 0.72369 0.73729 0.72766 1.93567 1.64572 1.79690 1.60002 1.93574 1.86429 1.30943 1.85197 1.56133 1.24496 1.71152 1.36943 1.19699 0.77263 1.03294 0.91756 1.24636 0.99255 0.85827 0.97276 1.74493 1.00526 1.20032 1.16088 1.74010 1.15851 1.12234 1.10225 1.25973 0.90946 0.93226 1.01783 1.47263 1.19961 1.14563 1.36078 1.22496 0.99753 0.79434 1.00820 1.22826 0.93667 0.96908 1.03309 1.20633 0.99905 0.89388 0.97834 0.92368 0.92522 0.92138 0.89846 0.92067 0.94537 0.92617 0.92594 0.75790 0.88429 0.86025 0.87959 0.88492 0.89082 0.87719 0.88005 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.13 2.23 6.01 -4.04 -0.02 2.20 16 3 N -0.99 -19.56 2.84 -115.67 -0.33 -19.89 16 4 C 0.24 5.70 5.46 -5.20 -0.03 5.67 16 5 C -0.54 -13.48 8.50 -34.44 -0.29 -13.77 16 6 H 0.07 1.60 6.45 -52.49 -0.34 1.26 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -24.50 13.29 55.43 0.74 -23.77 16 9 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 S 2.79 52.79 6.07 -107.50 -0.65 52.14 16 14 O -0.99 -19.64 17.10 -57.17 -0.98 -20.61 16 15 O -0.98 -21.30 16.02 -57.17 -0.92 -22.22 16 16 N -1.13 -18.34 6.04 -11.66 -0.07 -18.41 16 17 C 0.21 3.57 6.81 -5.19 -0.04 3.54 16 18 C 0.20 3.28 7.70 -154.89 -1.19 2.09 16 19 N -0.27 -5.05 12.21 32.82 0.40 -4.65 16 20 N -0.28 -4.89 12.22 32.92 0.40 -4.48 16 21 C 0.15 1.98 8.69 -154.84 -1.35 0.64 16 22 N -0.49 -6.54 3.62 -109.38 -0.40 -6.94 16 23 C 0.10 0.84 7.77 -3.13 -0.02 0.82 16 24 C -0.13 -0.69 7.17 -25.15 -0.18 -0.87 16 25 C -0.04 -0.27 6.85 -26.74 -0.18 -0.46 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.92 7.90 -51.93 -0.41 0.51 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 30 H 0.06 0.94 7.80 -51.93 -0.40 0.53 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.45 6.77 -51.93 -0.35 1.09 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 34 H 0.41 5.92 8.65 -34.48 -0.30 5.62 16 35 H 0.10 1.69 7.75 -51.93 -0.40 1.28 16 36 H 0.12 2.30 5.90 -51.93 -0.31 1.99 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -34.24 361.83 -10.27 -44.51 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.87 Total: 4.25 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.02 Total: -0.74 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: 0.74 Total: -78.13 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.89 Total: -42.83 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.65 Total: 52.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.24 -10.27 -44.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336919922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.416 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds