Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47354 * 2 1 4 4 C 1.46507 * 119.99681 * 274.99828 * 3 2 1 5 5 C 1.50695 * 109.47221 * 274.99684 * 4 3 2 6 6 H 1.08007 * 119.99965 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99931 * 179.97438 * 5 4 3 8 8 N 1.31505 * 119.99985 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99958 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47080 * 89.99807 * 9 7 5 11 11 H 1.48492 * 109.47082 * 210.00391 * 9 7 5 12 12 H 1.48506 * 109.46739 * 330.00241 * 9 7 5 13 13 S 1.65595 * 120.00245 * 94.99696 * 3 2 1 14 14 O 1.42105 * 106.40176 * 336.46249 * 13 3 2 15 15 O 1.42096 * 106.40175 * 203.54068 * 13 3 2 16 16 N 1.65600 * 107.21592 * 90.00162 * 13 3 2 17 17 C 1.47073 * 120.94634 * 95.01399 * 16 13 3 18 18 C 1.53328 * 109.24884 * 116.47860 * 17 16 13 19 19 N 1.46213 * 109.17615 * 45.66558 * 18 17 16 20 20 C 1.34793 * 128.60723 * 161.65462 * 19 18 17 21 21 N 1.30820 * 107.11808 * 179.50013 * 20 19 18 22 22 N 1.28920 * 109.74532 * 0.12527 * 21 20 19 23 23 C 1.29725 * 109.42952 * 0.11033 * 22 21 20 24 24 C 1.47528 * 120.94437 * 275.02894 * 16 13 3 25 25 H 1.09002 * 109.95250 * 103.68828 * 24 16 13 26 26 C 1.52996 * 109.95571 * 342.50273 * 24 16 13 27 27 H 1.09001 * 109.47344 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46905 * 300.00096 * 1 2 3 29 29 H 1.08997 * 109.47034 * 60.00147 * 1 2 3 30 30 H 1.09006 * 109.47089 * 239.99883 * 2 1 3 31 31 H 1.08997 * 109.47034 * 119.99853 * 2 1 3 32 32 H 1.09000 * 109.47067 * 35.00299 * 4 3 2 33 33 H 1.08999 * 109.46526 * 154.99631 * 4 3 2 34 34 H 0.97004 * 120.00109 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.50678 * 356.54193 * 17 16 13 36 36 H 1.08998 * 109.50848 * 236.41393 * 17 16 13 37 37 H 1.09000 * 109.51970 * 285.75112 * 18 17 16 38 38 H 1.09002 * 109.56909 * 165.60303 * 18 17 16 39 39 H 1.08001 * 126.44021 * 359.53897 * 20 19 18 40 40 H 1.08998 * 109.47777 * 62.82674 * 26 24 16 41 41 H 1.09005 * 109.47336 * 182.82775 * 26 24 16 42 42 H 1.09004 * 109.47193 * 302.81972 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1086 -1.2640 5 6 3.4949 1.7888 -1.8823 6 1 4.1722 1.1110 -1.3839 7 6 3.8526 2.3605 -3.0849 8 7 3.0277 3.1853 -3.6921 9 14 5.5090 1.9634 -3.8518 10 1 5.3730 0.7801 -4.7385 11 1 5.9779 3.1266 -4.6469 12 1 6.4928 1.6679 -2.7794 13 16 2.4122 2.1203 1.4286 14 8 1.6868 1.4416 2.4448 15 8 2.3058 3.5186 1.1997 16 7 4.0144 1.8137 1.7137 17 6 5.0517 2.7757 1.3116 18 6 5.7697 3.2969 2.5621 19 7 6.0869 2.1703 3.4384 20 6 6.9817 2.1135 4.4449 21 7 6.9140 0.9099 4.9529 22 7 6.0311 0.2180 4.3175 23 6 5.5038 0.9459 3.3821 24 6 4.4419 0.5677 2.3778 25 1 4.8531 -0.1237 1.6423 26 6 3.2530 -0.0774 3.0928 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3618 1.8097 -1.9454 33 1 2.0922 3.1802 -1.0757 34 1 3.2795 3.5878 -4.5380 35 1 4.5896 3.6095 0.7830 36 1 5.7711 2.2831 0.6575 37 1 5.1215 3.9971 3.0890 38 1 6.6906 3.8020 2.2705 39 1 7.6319 2.9119 4.7711 40 1 2.4943 -0.3527 2.3603 41 1 3.5877 -0.9696 3.6220 42 1 2.8300 0.6305 3.8056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337183055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = 32.200205 kcal Electronic energy + Delta-G solvation = -28451.608587 eV Core-core repulsion = 24596.222297 eV Total energy + Delta-G solvation = -3855.386290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.26610 -37.87324 -37.18209 -36.17503 -35.45160 -34.67859 -32.84740 -31.85542 -30.07690 -30.04233 -28.10571 -26.75062 -24.36740 -23.67964 -23.22150 -22.28258 -21.78419 -20.30026 -18.38663 -17.66743 -17.28589 -16.83460 -16.54681 -16.38639 -15.93049 -15.38991 -15.13428 -14.71038 -14.47528 -14.04502 -13.87103 -13.54658 -13.29573 -13.10344 -12.91489 -12.48771 -12.28736 -12.13295 -11.97698 -11.82173 -11.68531 -11.54816 -11.38679 -11.28089 -11.17393 -11.04721 -10.63681 -10.48047 -10.44948 -10.28265 -10.18824 -10.07331 -9.90194 -9.39130 -9.09421 -8.62282 -8.20745 -6.23598 -4.31174 0.96784 1.79752 2.39378 2.85759 3.13721 3.14694 3.23322 3.23933 3.85985 4.05768 4.24235 4.29765 4.45030 4.61074 4.72594 4.87120 4.98497 5.10067 5.16246 5.17274 5.31608 5.40586 5.60814 5.65816 5.71114 5.75658 5.81123 5.93214 5.99936 6.05259 6.12156 6.24694 6.44422 6.50716 6.61746 6.65085 6.80965 7.22464 7.29626 7.50232 7.72862 8.01789 8.69655 8.74171 9.35675 10.84177 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.005890 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.127055 B = 4752.394288 C = 6015.886588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.123 3.877 3 N -0.986 5.986 4 C 0.244 3.756 5 C -0.542 4.542 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 S 2.783 3.217 14 O -0.984 6.984 15 O -0.975 6.975 16 N -1.008 6.008 17 C 0.112 3.888 18 C 0.087 3.913 19 N -0.466 5.466 20 C 0.149 3.851 21 N -0.304 5.304 22 N -0.286 5.286 23 C 0.180 3.820 24 C 0.242 3.758 25 H 0.105 0.895 26 C -0.167 4.167 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.050 0.950 34 H 0.265 0.735 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.218 0.782 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -1.464 9.258 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.828 5.828 4 C 0.122 3.878 5 C -0.582 4.582 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 S 2.793 3.207 14 O -0.968 6.968 15 O -0.959 6.959 16 N -0.845 5.845 17 C -0.014 4.014 18 C -0.038 4.038 19 N -0.156 5.156 20 C -0.138 4.138 21 N -0.144 5.144 22 N -0.126 5.126 23 C -0.090 4.090 24 C 0.133 3.867 25 H 0.123 0.877 26 C -0.225 4.225 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.234 0.766 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.721 -1.959 10.505 11.027 hybrid contribution 1.202 0.944 -1.731 2.309 sum 3.923 -1.015 8.774 9.664 Atomic orbital electron populations 1.22203 0.96667 1.01591 1.02479 1.21187 0.93919 0.82763 1.02441 1.57743 1.77802 1.23146 1.24128 1.19224 0.97490 0.92128 0.78922 1.21529 1.02228 1.28184 1.06220 0.91946 1.24945 0.97193 0.94780 0.96831 1.69924 1.35956 1.29605 1.17027 0.86600 0.83851 0.78055 0.79474 1.20552 1.21096 1.19911 1.02032 0.72299 0.73278 0.73090 1.93675 1.71264 1.75115 1.56731 1.93561 1.85296 1.30898 1.86157 1.58689 1.25735 1.27171 1.72934 1.21687 0.91666 0.94206 0.93883 1.22561 1.02477 0.86976 0.91782 1.46121 1.29761 1.12777 1.26983 1.26284 0.96977 0.99886 0.90677 1.74454 1.15169 1.01767 1.22997 1.74014 1.07629 1.25350 1.05592 1.24990 1.00242 0.83343 1.00465 1.19576 0.91801 0.85643 0.89696 0.87731 1.22710 0.94805 1.02187 1.02835 0.92163 0.92552 0.92041 0.89988 0.91417 0.94176 0.93237 0.92480 0.85523 0.89327 0.88723 0.87349 0.76551 0.89327 0.90485 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.12 1.91 6.06 -4.04 -0.02 1.89 16 3 N -0.99 -18.27 2.83 -115.66 -0.33 -18.59 16 4 C 0.24 5.53 5.43 -5.19 -0.03 5.51 16 5 C -0.54 -12.92 9.38 -34.44 -0.32 -13.24 16 6 H 0.06 1.43 7.81 -52.48 -0.41 1.02 16 7 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 9 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 13 S 2.78 49.55 5.89 -107.50 -0.63 48.92 16 14 O -0.98 -17.50 12.09 -57.17 -0.69 -18.19 16 15 O -0.98 -20.20 15.26 -57.17 -0.87 -21.07 16 16 N -1.01 -15.30 3.34 -107.05 -0.36 -15.65 16 17 C 0.11 1.51 6.42 -3.56 -0.02 1.48 16 18 C 0.09 0.90 7.18 -4.03 -0.03 0.88 16 19 N -0.47 -5.94 3.11 -115.48 -0.36 -6.29 16 20 C 0.15 1.79 12.81 -90.34 -1.16 0.63 16 21 N -0.30 -4.77 12.23 29.60 0.36 -4.41 16 22 N -0.29 -4.75 12.20 32.78 0.40 -4.35 16 23 C 0.18 2.69 7.17 -155.30 -1.11 1.57 16 24 C 0.24 3.43 3.88 -68.39 -0.27 3.17 16 25 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 26 C -0.17 -2.33 7.53 37.16 0.28 -2.05 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 31 H 0.07 0.92 4.96 -51.93 -0.26 0.66 16 32 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.05 1.24 6.91 -51.93 -0.36 0.88 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.13 1.83 6.96 -51.93 -0.36 1.47 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.22 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.09 1.21 3.70 -51.93 -0.19 1.02 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.39 6.63 -51.93 -0.34 1.05 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -31.74 347.34 -9.64 -41.38 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.71 Total: 2.44 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: 0.45 Total: -72.37 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.56 Total: -39.26 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Atomic # 16 Polarization: 49.55 SS G_CDS: -0.63 Total: 48.92 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.74 -9.64 -41.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337183055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.576 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds