Wall clock time and date at job start Tue Mar 31 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37096 * 120.00429 * 2 1 4 4 H 1.08004 * 120.00072 * 202.41449 * 3 2 1 5 5 C 1.38950 * 119.99859 * 22.40254 * 3 2 1 6 6 N 1.31414 * 120.00206 * 11.59698 * 5 3 2 7 7 Si 1.86804 * 120.00271 * 191.59825 * 5 3 2 8 8 H 1.48501 * 109.47111 * 59.99960 * 7 5 3 9 9 H 1.48493 * 109.47360 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46911 * 300.00325 * 7 5 3 11 11 C 1.34781 * 120.00015 * 180.02562 * 2 1 3 12 12 O 1.21289 * 120.00246 * 180.02562 * 11 2 1 13 13 C 1.50706 * 119.99695 * 359.97438 * 11 2 1 14 14 N 1.46501 * 109.46932 * 180.02562 * 13 11 2 15 15 C 1.34771 * 119.99973 * 180.02562 * 14 13 11 16 16 O 1.21639 * 119.99998 * 359.97438 * 15 14 13 17 17 C 1.47133 * 120.00307 * 180.02562 * 15 14 13 18 18 C 1.37951 * 120.54962 * 359.71980 * 17 15 14 19 19 N 1.33950 * 122.20063 * 179.72444 * 18 17 15 20 20 H 0.97009 * 118.59443 * 180.25609 * 19 18 17 21 21 C 1.37803 * 122.80811 * 0.59383 * 19 18 17 22 22 C 1.39276 * 120.52338 * 179.70799 * 21 19 18 23 23 C 1.37734 * 119.96774 * 179.97438 * 22 21 19 24 24 C 1.38790 * 120.73088 * 0.02562 * 23 22 21 25 25 C 1.37715 * 120.28798 * 359.93709 * 24 23 22 26 26 C 1.39496 * 119.60709 * 0.08523 * 25 24 23 27 27 C 1.47142 * 120.55964 * 179.97438 * 17 15 14 28 28 O 1.21862 * 121.40448 * 359.97438 * 27 17 15 29 29 H 1.08997 * 109.47085 * 272.16636 * 1 2 3 30 30 H 1.09003 * 109.47079 * 32.16351 * 1 2 3 31 31 H 1.09000 * 109.47166 * 152.16078 * 1 2 3 32 32 H 0.96993 * 120.00036 * 179.97438 * 6 5 3 33 33 H 1.08995 * 109.46697 * 60.00638 * 13 11 2 34 34 H 1.08995 * 109.46945 * 300.00171 * 13 11 2 35 35 H 0.97006 * 119.99975 * 0.02562 * 14 13 11 36 36 H 1.08003 * 118.89985 * 0.02562 * 18 17 15 37 37 H 1.07996 * 120.01918 * 0.02562 * 22 21 19 38 38 H 1.08003 * 119.63722 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.85509 * 179.97438 * 24 23 22 40 40 H 1.08005 * 120.19315 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1694 1.2225 -0.3566 5 6 1.5345 2.3452 0.4586 6 7 0.3896 2.2708 1.0994 7 14 2.3337 4.0078 0.1643 8 1 2.4816 4.2343 -1.2959 9 1 1.4832 5.0761 0.7478 10 1 3.6720 4.0345 0.8074 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1673 -0.0001 13 6 1.3853 -2.4724 -0.0005 14 7 2.3373 -3.5859 -0.0005 15 6 1.8880 -4.8565 -0.0010 16 8 0.6921 -5.0788 -0.0010 17 6 2.8441 -5.9749 -0.0005 18 6 4.2027 -5.7360 -0.0052 19 7 5.1021 -6.7286 0.0006 20 1 6.0450 -6.5008 0.0006 21 6 4.7451 -8.0596 -0.0003 22 6 5.7206 -9.0537 -0.0002 23 6 5.3509 -10.3804 -0.0006 24 6 4.0113 -10.7434 -0.0016 25 6 3.0299 -9.7773 -0.0010 26 6 3.3897 -8.4295 -0.0011 27 6 2.3671 -7.3669 -0.0005 28 8 1.1773 -7.6304 -0.0005 29 1 -0.3633 0.0388 1.0269 30 1 -0.3633 0.8700 -0.5471 31 1 -0.3633 -0.9087 -0.4799 32 1 -0.0402 3.0791 1.4199 33 1 0.7585 -2.5298 -0.8903 34 1 0.7590 -2.5302 0.8896 35 1 3.2910 -3.4086 -0.0001 36 1 4.5530 -4.7143 -0.0089 37 1 6.7664 -8.7843 0.0010 38 1 6.1118 -11.1469 -0.0001 39 1 3.7374 -11.7881 -0.0023 40 1 1.9879 -10.0615 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337549241.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:28 Heat of formation + Delta-G solvation = -44.740834 kcal Electronic energy + Delta-G solvation = -26613.885909 eV Core-core repulsion = 22587.426502 eV Total energy + Delta-G solvation = -4026.459407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32381 -39.40910 -38.38430 -37.84198 -37.39302 -34.94686 -33.79610 -32.30091 -31.72236 -31.18135 -30.26860 -27.69204 -26.09951 -24.61919 -24.35931 -23.75779 -22.60821 -20.86674 -19.48870 -18.78509 -18.55653 -17.99741 -16.97125 -16.58189 -16.02056 -15.68548 -15.53145 -15.24767 -15.03101 -14.90565 -14.64539 -14.35858 -14.26117 -14.02693 -13.87565 -13.49369 -13.39462 -12.93090 -12.56541 -12.33551 -12.27998 -12.07298 -11.70464 -11.55097 -11.34626 -11.25681 -10.90019 -10.45887 -10.33357 -9.96081 -9.64710 -9.42892 -9.31192 -9.09222 -8.70024 -8.59384 -8.04797 -7.79030 -6.38128 -3.96199 0.41135 0.47576 1.34604 2.40819 2.57161 3.13547 3.20479 3.22662 3.34014 3.35019 3.74735 3.88190 3.93904 4.08598 4.20338 4.38808 4.55654 4.63513 4.74187 4.85016 4.86630 5.06731 5.15975 5.35495 5.42747 5.55916 5.57954 5.70804 5.93594 5.97744 6.05921 6.14847 6.19335 6.33765 6.52302 6.60088 6.74793 6.85831 7.21132 7.49267 7.82654 7.91764 8.01724 8.37049 8.63823 9.06888 9.31884 9.83228 10.64829 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.030409 B = 0.002285 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.558100 B =12252.454029 C =13100.561194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.435 5.435 3 C -0.310 4.310 4 H 0.100 0.900 5 C 0.032 3.968 6 N -0.878 5.878 7 Si 0.930 3.070 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.435 3.565 12 O -0.597 6.597 13 C 0.113 3.887 14 N -0.715 5.715 15 C 0.573 3.427 16 O -0.524 6.524 17 C -0.321 4.321 18 C 0.211 3.789 19 N -0.596 5.596 20 H 0.423 0.577 21 C 0.181 3.819 22 C -0.169 4.169 23 C -0.062 4.062 24 C -0.155 4.155 25 C -0.031 4.031 26 C -0.182 4.182 27 C 0.432 3.568 28 O -0.448 6.448 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.270 0.730 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.401 0.599 36 H 0.173 0.827 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.544 -21.451 -2.106 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.152 5.152 3 C -0.438 4.438 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.517 5.517 7 Si 0.757 3.243 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.222 3.778 12 O -0.484 6.484 13 C -0.014 4.014 14 N -0.370 5.370 15 C 0.360 3.640 16 O -0.400 6.400 17 C -0.333 4.333 18 C 0.077 3.923 19 N -0.204 5.204 20 H 0.259 0.741 21 C 0.080 3.920 22 C -0.189 4.189 23 C -0.081 4.081 24 C -0.174 4.174 25 C -0.050 4.050 26 C -0.186 4.186 27 C 0.312 3.688 28 O -0.325 6.325 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.239 0.761 36 H 0.190 0.810 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.377 -21.579 -2.011 24.028 hybrid contribution 1.201 1.265 -0.011 1.744 sum 11.578 -20.314 -2.023 23.469 Atomic orbital electron populations 1.21622 0.80634 0.99323 1.02211 1.43535 1.05827 1.04598 1.61270 1.19614 0.99575 0.83621 1.40950 0.88239 1.25392 0.96456 1.00224 0.95161 1.69995 1.17161 1.29650 1.34874 0.85940 0.78977 0.80630 0.78787 1.19840 1.20880 1.19767 1.19892 0.88053 0.84884 0.84922 1.90449 1.13789 1.86742 1.57408 1.21007 0.91777 0.85412 1.03242 1.45632 1.10962 1.04614 1.75814 1.17317 0.87911 0.81564 0.77228 1.90840 1.15563 1.84305 1.49291 1.21947 0.91810 0.96413 1.23093 1.22178 0.89762 0.93182 0.87136 1.40846 1.10494 1.03406 1.65659 0.74060 1.17926 0.93522 0.83276 0.97255 1.20714 0.98239 0.92213 1.07770 1.21111 0.96543 0.95330 0.95089 1.21167 0.92577 0.99915 1.03727 1.21184 1.00821 0.90472 0.92525 1.20328 0.92121 0.96093 1.10043 1.19334 0.88249 0.86420 0.74773 1.90750 1.17515 1.84968 1.39228 0.91933 0.90967 0.94987 0.91988 0.89922 0.89658 0.76070 0.81005 0.84792 0.84989 0.85032 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.36 8.52 59.85 0.51 2.87 16 2 N -0.43 -10.95 3.02 -122.19 -0.37 -11.32 16 3 C -0.31 -8.40 9.29 -14.93 -0.14 -8.54 16 4 H 0.10 2.78 7.41 -52.48 -0.39 2.40 16 5 C 0.03 0.82 5.11 -17.47 -0.09 0.73 16 6 N -0.88 -23.05 10.62 55.50 0.59 -22.46 16 7 Si 0.93 20.26 29.57 -169.99 -5.03 15.23 16 8 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 11 C 0.43 10.21 7.70 -10.98 -0.08 10.13 16 12 O -0.60 -15.11 15.36 5.55 0.09 -15.02 16 13 C 0.11 2.22 4.68 -5.19 -0.02 2.19 16 14 N -0.71 -12.46 5.48 -62.66 -0.34 -12.80 16 15 C 0.57 10.45 7.76 -12.65 -0.10 10.36 16 16 O -0.52 -11.78 15.55 -14.89 -0.23 -12.01 16 17 C -0.32 -4.67 6.04 -102.78 -0.62 -5.29 16 18 C 0.21 1.96 10.65 -16.73 -0.18 1.79 16 19 N -0.60 -3.93 5.21 -10.42 -0.05 -3.98 16 20 H 0.42 1.08 8.73 -40.82 -0.36 0.72 16 21 C 0.18 1.53 6.66 -83.94 -0.56 0.97 16 22 C -0.17 -0.97 9.87 -39.38 -0.39 -1.36 16 23 C -0.06 -0.34 10.01 -39.56 -0.40 -0.74 16 24 C -0.15 -1.07 10.03 -39.57 -0.40 -1.46 16 25 C -0.03 -0.31 9.65 -39.30 -0.38 -0.69 16 26 C -0.18 -2.12 5.89 -104.81 -0.62 -2.74 16 27 C 0.43 6.82 7.15 -32.21 -0.23 6.59 16 28 O -0.45 -8.85 15.85 -15.08 -0.24 -9.09 16 29 H 0.06 1.45 7.54 -51.93 -0.39 1.06 16 30 H 0.07 1.68 7.06 -51.93 -0.37 1.31 16 31 H 0.03 0.60 6.36 -51.93 -0.33 0.27 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.08 1.57 7.40 -51.93 -0.38 1.19 16 34 H 0.09 1.68 8.11 -51.93 -0.42 1.26 16 35 H 0.40 6.27 5.45 -40.82 -0.22 6.05 16 36 H 0.17 1.21 6.31 -52.48 -0.33 0.88 16 37 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.13 0.37 8.06 -52.48 -0.42 -0.06 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.14 1.41 7.79 -52.48 -0.41 1.00 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -37.44 345.60 -8.08 -45.52 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.00 Total: 5.92 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: -3.69 Total: 14.80 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.18 Total: -50.56 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.39 Total: -36.12 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.44 -8.08 -45.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337549241.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.778 kcal (2) G-P(sol) polarization free energy of solvation -37.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds