Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47575 * 2 1 4 4 C 1.50699 * 109.46995 * 239.99966 * 2 1 3 5 5 H 1.08001 * 120.00320 * 239.99969 * 4 2 1 6 6 C 1.37875 * 120.00209 * 60.00216 * 4 2 1 7 7 N 1.31521 * 119.99974 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00413 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46972 * 60.00050 * 8 6 4 10 10 H 1.48492 * 109.47395 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46941 * 300.00214 * 8 6 4 12 12 N 1.46499 * 109.46933 * 120.00107 * 2 1 3 13 13 C 1.46504 * 119.99950 * 60.00287 * 12 2 1 14 14 S 1.65597 * 119.99885 * 239.99668 * 12 2 1 15 15 O 1.42100 * 106.40104 * 203.54108 * 14 12 2 16 16 O 1.42101 * 106.40724 * 336.46095 * 14 12 2 17 17 N 1.65596 * 107.21823 * 90.00439 * 14 12 2 18 18 C 1.47079 * 120.94902 * 96.84303 * 17 14 12 19 19 C 1.53332 * 109.24292 * 116.43234 * 18 17 14 20 20 N 1.46225 * 109.17596 * 45.66527 * 19 18 17 21 21 C 1.34793 * 128.60531 * 161.61636 * 20 19 18 22 22 N 1.30821 * 107.11984 * 179.54898 * 21 20 19 23 23 N 1.28931 * 109.73813 * 0.13178 * 22 21 20 24 24 C 1.29721 * 109.43005 * 0.10590 * 23 22 21 25 25 C 1.47524 * 120.94389 * 276.56567 * 17 14 12 26 26 H 1.09007 * 109.95679 * 103.80412 * 25 17 14 27 27 C 1.53004 * 109.95584 * 342.53040 * 25 17 14 28 28 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47026 * 299.99932 * 1 2 3 30 30 H 1.09004 * 109.46670 * 59.99927 * 1 2 3 31 31 H 0.97003 * 120.00149 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47583 * 89.99769 * 13 12 2 33 33 H 1.09007 * 109.46900 * 210.00034 * 13 12 2 34 34 H 1.08999 * 109.46811 * 329.99182 * 13 12 2 35 35 H 1.08992 * 109.50842 * 236.36161 * 18 17 14 36 36 H 1.09001 * 109.50573 * 356.50177 * 18 17 14 37 37 H 1.09001 * 109.52267 * 165.57725 * 19 18 17 38 38 H 1.09001 * 109.52191 * 285.70061 * 19 18 17 39 39 H 1.07998 * 126.43771 * 359.55073 * 21 20 19 40 40 H 1.09004 * 109.47237 * 63.09899 * 27 25 17 41 41 H 1.09004 * 109.47224 * 183.09693 * 27 25 17 42 42 H 1.09002 * 109.47153 * 303.09827 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5795 1.1829 1.5749 17 7 1.9608 0.8089 3.3998 18 6 1.6848 0.1501 4.6855 19 6 2.2141 1.0269 5.8265 20 7 1.8162 2.4141 5.5906 21 6 1.7664 3.4357 6.4684 22 7 1.3630 4.4910 5.8088 23 7 1.1576 4.1806 4.5744 24 6 1.4176 2.9222 4.3968 25 6 1.3172 2.1093 3.1330 26 1 0.2694 1.9594 2.8727 27 6 2.0425 2.8267 1.9926 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7090 1.1615 -3.4845 32 1 2.4156 -2.7378 0.9716 33 1 1.6237 -2.2853 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 0.6098 0.0126 4.8007 36 1 2.1814 -0.8199 4.7113 37 1 1.7964 0.6842 6.7732 38 1 3.3015 0.9603 5.8628 39 1 2.0133 3.3914 7.5189 40 1 1.9526 2.2395 1.0786 41 1 1.5957 3.8089 1.8388 42 1 3.0958 2.9426 2.2479 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337750195.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = 40.940444 kcal Electronic energy + Delta-G solvation = -28384.259564 eV Core-core repulsion = 24529.252278 eV Total energy + Delta-G solvation = -3855.007285 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.33094 -37.98054 -37.21767 -36.30930 -35.48476 -34.72705 -32.66534 -31.98150 -30.11738 -29.21958 -28.11562 -25.74358 -25.22937 -24.37848 -23.79378 -22.31609 -20.87136 -20.36687 -18.39978 -17.82462 -17.30304 -16.89993 -16.54873 -16.42822 -15.98213 -15.38281 -15.05357 -14.66512 -14.56488 -14.04469 -13.60215 -13.43801 -13.32104 -13.17064 -12.88252 -12.44655 -12.22994 -12.13776 -11.96125 -11.79421 -11.48222 -11.45064 -11.37309 -11.10508 -11.03750 -10.85167 -10.52928 -10.49216 -10.36760 -10.28460 -10.18530 -10.08742 -9.51707 -9.31651 -9.15485 -8.49940 -8.11174 -6.13337 -4.20330 0.85451 1.73254 2.29412 2.82925 3.10516 3.26793 3.32121 3.34832 3.79734 4.03554 4.08024 4.32992 4.35248 4.52255 4.54860 4.78200 4.87371 5.03040 5.17010 5.23625 5.28417 5.34918 5.41609 5.53322 5.78420 5.96099 6.00666 6.03354 6.18600 6.24783 6.40665 6.50595 6.65921 6.67903 6.73374 6.82516 6.95569 7.32766 7.55921 7.71457 7.95749 8.19020 8.66342 8.81107 9.45831 10.92107 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.021520 B = 0.004373 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.820057 B = 6401.682209 C = 7046.876301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.263 3.737 3 H 0.066 0.934 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.985 5.985 13 C 0.110 3.890 14 S 2.774 3.226 15 O -0.992 6.992 16 O -0.958 6.958 17 N -1.017 6.017 18 C 0.106 3.894 19 C 0.089 3.911 20 N -0.470 5.470 21 C 0.148 3.852 22 N -0.302 5.302 23 N -0.281 5.281 24 C 0.182 3.818 25 C 0.244 3.756 26 H 0.106 0.894 27 C -0.175 4.175 28 H 0.034 0.966 29 H 0.011 0.989 30 H 0.095 0.905 31 H 0.265 0.735 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.218 0.782 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -2.835 16.620 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.829 5.829 13 C -0.037 4.037 14 S 2.785 3.215 15 O -0.976 6.976 16 O -0.941 6.941 17 N -0.854 5.854 18 C -0.020 4.020 19 C -0.036 4.036 20 N -0.162 5.162 21 C -0.139 4.139 22 N -0.141 5.141 23 N -0.121 5.121 24 C -0.088 4.088 25 C 0.136 3.864 26 H 0.124 0.876 27 C -0.233 4.233 28 H 0.053 0.947 29 H 0.030 0.970 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.235 0.765 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.769 -1.257 16.204 16.271 hybrid contribution 0.260 -1.894 -0.250 1.928 sum -0.508 -3.151 15.954 16.270 Atomic orbital electron populations 1.22149 0.98150 0.99864 1.00776 1.18923 0.91415 0.93132 0.80441 0.91663 1.21246 1.31954 1.13151 0.89919 0.92020 1.24889 0.94870 0.94973 0.98965 1.69830 1.36211 1.22486 1.24079 0.86560 0.79375 0.79573 0.81929 1.20254 1.21155 1.20152 1.57754 1.70058 1.19771 1.35270 1.21162 1.01988 0.81921 0.98615 1.02339 0.73755 0.73002 0.72386 1.93519 1.68791 1.60337 1.74922 1.93730 1.74546 1.53774 1.72082 1.58990 1.66631 1.30032 1.29754 1.21679 1.02498 0.96300 0.81568 1.22432 1.02274 0.77869 1.00988 1.46097 1.49620 1.11332 1.09112 1.26287 1.04674 0.84066 0.98900 1.74492 1.17111 1.23433 0.99055 1.74071 1.19399 1.09158 1.09457 1.25003 1.01734 0.92530 0.89531 1.19561 0.99306 0.79112 0.88453 0.87614 1.22800 1.01831 1.01869 0.96830 0.94698 0.97015 0.88669 0.92496 0.93064 0.93511 0.90757 0.89757 0.86337 0.87447 0.88704 0.76540 0.88083 0.90260 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.95 37.16 0.33 -2.79 16 2 C 0.26 5.90 2.48 -69.08 -0.17 5.73 16 3 H 0.07 1.59 4.60 -51.93 -0.24 1.35 16 4 C -0.52 -13.32 8.37 -34.44 -0.29 -13.61 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -23.57 11.32 55.43 0.63 -22.94 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.99 -18.53 3.12 -115.85 -0.36 -18.89 16 13 C 0.11 1.75 9.53 59.85 0.57 2.32 16 14 S 2.77 49.09 5.83 -107.50 -0.63 48.46 16 15 O -0.99 -18.11 15.73 -57.17 -0.90 -19.01 16 16 O -0.96 -20.03 11.93 -57.17 -0.68 -20.71 16 17 N -1.02 -13.94 3.34 -107.23 -0.36 -14.30 16 18 C 0.11 1.00 6.43 -3.55 -0.02 0.98 16 19 C 0.09 0.71 7.18 -4.02 -0.03 0.68 16 20 N -0.47 -5.42 3.11 -115.62 -0.36 -5.78 16 21 C 0.15 1.64 12.81 -90.33 -1.16 0.49 16 22 N -0.30 -4.65 12.23 29.60 0.36 -4.29 16 23 N -0.28 -4.74 12.19 32.69 0.40 -4.34 16 24 C 0.18 2.67 7.15 -155.49 -1.11 1.56 16 25 C 0.24 3.57 3.86 -68.57 -0.26 3.30 16 26 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 27 C -0.17 -2.98 7.53 37.16 0.28 -2.70 16 28 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 31 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.59 7.79 -51.93 -0.40 0.19 16 34 H 0.07 1.15 6.43 -51.93 -0.33 0.82 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.12 1.01 6.92 -51.93 -0.36 0.65 16 37 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.22 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.10 1.94 3.97 -51.93 -0.21 1.73 16 41 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.09 1.61 6.56 -51.93 -0.34 1.27 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -32.93 339.28 -9.23 -42.15 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.46 Total: 1.55 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.96 Total: -2.42 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: 0.31 Total: -70.54 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.58 Total: -39.73 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 49.09 SS G_CDS: -0.63 Total: 48.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.93 -9.23 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750195.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.095 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds