Wall clock time and date at job start Tue Mar 31 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46554 * 2 1 4 4 C 1.50696 * 109.47420 * 119.99847 * 2 1 3 5 5 H 1.08007 * 119.99891 * 119.99929 * 4 2 1 6 6 C 1.37878 * 120.00260 * 300.00558 * 4 2 1 7 7 N 1.31507 * 120.00222 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99876 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47157 * 90.00020 * 8 6 4 10 10 H 1.48501 * 109.47205 * 210.00317 * 8 6 4 11 11 H 1.48500 * 109.47417 * 330.00296 * 8 6 4 12 12 N 1.46500 * 109.46797 * 240.00340 * 2 1 3 13 13 C 1.46502 * 120.00251 * 299.99301 * 12 2 1 14 14 S 1.65607 * 119.99767 * 119.99943 * 12 2 1 15 15 O 1.42103 * 106.39952 * 156.45886 * 14 12 2 16 16 O 1.42093 * 106.40169 * 23.53671 * 14 12 2 17 17 N 1.65598 * 107.21551 * 269.99319 * 14 12 2 18 18 C 1.47084 * 120.95335 * 269.98064 * 17 14 12 19 19 C 1.53327 * 109.24139 * 116.45501 * 18 17 14 20 20 N 1.46222 * 109.17567 * 45.66580 * 19 18 17 21 21 C 1.34791 * 128.60328 * 161.81894 * 20 19 18 22 22 N 1.30824 * 107.11383 * 179.38868 * 21 20 19 23 23 N 1.28927 * 109.74567 * 0.14258 * 22 21 20 24 24 C 1.29724 * 109.42384 * 0.11015 * 23 22 21 25 25 C 1.47526 * 120.94536 * 90.00311 * 17 14 12 26 26 H 1.08999 * 109.95707 * 342.48420 * 25 17 14 27 27 C 1.52996 * 109.95702 * 103.76160 * 25 17 14 28 28 H 1.08996 * 109.47554 * 60.00057 * 1 2 3 29 29 H 1.09003 * 109.46554 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47092 * 299.99358 * 1 2 3 31 31 H 0.96999 * 120.00373 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47086 * 270.01028 * 13 12 2 33 33 H 1.09001 * 109.46884 * 30.00014 * 13 12 2 34 34 H 1.08996 * 109.47080 * 150.00180 * 13 12 2 35 35 H 1.09006 * 109.50244 * 356.52640 * 18 17 14 36 36 H 1.09002 * 109.51302 * 236.38966 * 18 17 14 37 37 H 1.08998 * 109.52557 * 285.75376 * 19 18 17 38 38 H 1.09004 * 109.56865 * 165.60349 * 19 18 17 39 39 H 1.07994 * 126.44270 * 359.37221 * 21 20 19 40 40 H 1.08999 * 109.47320 * 177.50838 * 27 25 17 41 41 H 1.08994 * 109.47770 * 297.51491 * 27 25 17 42 42 H 1.09009 * 109.46824 * 57.51324 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8596 3.5565 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 16 2.9704 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 7 1.9606 0.8091 -3.3998 18 6 1.5665 0.0862 -4.6186 19 6 0.0514 -0.1479 -4.5996 20 7 -0.6210 1.0900 -4.2078 21 6 -1.9126 1.4357 -4.3782 22 7 -2.0637 2.6275 -3.8602 23 7 -0.9398 3.0403 -3.3820 24 6 -0.0303 2.1358 -3.5758 25 6 1.4310 2.1711 -3.1979 26 1 1.5379 2.4607 -2.1525 27 6 2.1785 3.1603 -4.0942 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.9034 -0.5280 4.4375 32 1 2.4158 -2.7376 -0.9717 33 1 0.6906 -2.3003 -0.9847 34 1 1.6238 -2.2851 -2.5003 35 1 2.0827 -0.8732 -4.6556 36 1 1.8326 0.6775 -5.4948 37 1 -0.1868 -0.9342 -3.8833 38 1 -0.2844 -0.4462 -5.5928 39 1 -2.6787 0.8409 -4.8532 40 1 1.7518 4.1558 -3.9717 41 1 3.2318 3.1796 -3.8149 42 1 2.0842 2.8503 -5.1351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337750197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:02 Heat of formation + Delta-G solvation = 34.065272 kcal Electronic energy + Delta-G solvation = -28721.735671 eV Core-core repulsion = 24866.430256 eV Total energy + Delta-G solvation = -3855.305415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38376 -38.12130 -37.14199 -36.57368 -35.58333 -34.83482 -32.59572 -32.07321 -30.19444 -30.10264 -28.63912 -25.98899 -25.11778 -24.34817 -24.06163 -22.57246 -21.09907 -19.99976 -18.61976 -17.96260 -17.46241 -17.35171 -16.84914 -16.39569 -16.00049 -15.44733 -15.26937 -14.71690 -14.57833 -14.12557 -13.87992 -13.64279 -13.38457 -13.15163 -12.92422 -12.50943 -12.46462 -12.36999 -12.28443 -12.12545 -11.91594 -11.78186 -11.67974 -11.46664 -11.39390 -11.30421 -11.19017 -10.58756 -10.51827 -10.32619 -10.23761 -9.75092 -9.58810 -9.50352 -9.28654 -8.69584 -8.28074 -6.18783 -4.20508 0.68848 1.68562 2.24096 2.77959 2.94681 3.20487 3.33424 3.34752 3.62426 3.89391 4.03568 4.24231 4.30077 4.40530 4.47791 4.68265 4.83223 4.86490 4.91995 5.09129 5.20010 5.23315 5.24574 5.32134 5.50681 5.58893 5.82388 5.87055 5.93332 5.98087 6.04931 6.09719 6.15589 6.23130 6.34999 6.42714 6.67766 6.69964 7.13722 7.22669 7.53195 8.38908 8.61461 8.84149 9.40675 10.93824 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.006159 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.941393 B = 4545.098570 C = 5434.644516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.241 3.759 3 H 0.056 0.944 4 C -0.525 4.525 5 H 0.083 0.917 6 C 0.077 3.923 7 N -0.891 5.891 8 Si 0.879 3.121 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.263 1.263 12 N -0.981 5.981 13 C 0.109 3.891 14 S 2.777 3.223 15 O -0.979 6.979 16 O -0.959 6.959 17 N -1.015 6.015 18 C 0.106 3.894 19 C 0.086 3.914 20 N -0.465 5.465 21 C 0.153 3.847 22 N -0.300 5.300 23 N -0.282 5.282 24 C 0.179 3.821 25 C 0.240 3.760 26 H 0.127 0.873 27 C -0.153 4.153 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.267 0.733 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.218 0.782 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 0.163 -19.979 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.564 4.564 5 H 0.101 0.899 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.709 3.291 9 H -0.204 1.204 10 H -0.218 1.218 11 H -0.188 1.188 12 N -0.823 5.823 13 C -0.038 4.038 14 S 2.787 3.213 15 O -0.963 6.963 16 O -0.943 6.943 17 N -0.852 5.852 18 C -0.021 4.021 19 C -0.039 4.039 20 N -0.156 5.156 21 C -0.134 4.134 22 N -0.140 5.140 23 N -0.121 5.121 24 C -0.091 4.091 25 C 0.132 3.868 26 H 0.145 0.855 27 C -0.213 4.213 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.235 0.765 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.405 1.459 -19.345 19.894 hybrid contribution -0.756 -0.728 -0.141 1.059 sum -5.161 0.730 -19.486 20.171 Atomic orbital electron populations 1.22467 0.99097 1.01206 0.99015 1.19108 0.90283 0.93536 0.83410 0.92631 1.21089 1.32833 1.14423 0.88055 0.89933 1.24884 0.95607 0.96490 0.95690 1.69858 1.44932 1.40046 0.98013 0.86999 0.80488 0.83847 0.77812 1.20398 1.21845 1.18808 1.57527 1.70034 1.20007 1.34773 1.21210 1.02303 0.81661 0.98579 1.02268 0.73614 0.73241 0.72212 1.93563 1.68269 1.59953 1.74516 1.93625 1.73275 1.55739 1.71622 1.59116 1.67446 1.23853 1.34786 1.21714 0.92206 0.99524 0.88631 1.22487 0.93967 0.84460 1.02947 1.45996 1.09487 1.16089 1.44060 1.26285 0.86025 0.96678 1.04446 1.74496 1.17219 1.08941 1.13298 1.74075 0.95375 1.23859 1.18814 1.24846 0.98297 0.86260 0.99718 1.19456 0.82540 0.82237 1.02584 0.85509 1.22092 1.01262 0.98842 0.99076 0.95505 0.92263 0.93041 0.92325 0.92368 0.90838 0.93347 0.86223 0.89470 0.88469 0.87476 0.76526 0.89985 0.90253 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.65 37.16 0.32 -2.90 16 2 C 0.24 5.38 2.21 -69.08 -0.15 5.22 16 3 H 0.06 1.32 5.97 -51.93 -0.31 1.01 16 4 C -0.52 -14.08 8.95 -34.44 -0.31 -14.39 16 5 H 0.08 2.39 7.89 -52.48 -0.41 1.98 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 8 Si 0.88 21.51 24.37 -169.99 -4.14 17.37 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 12 N -0.98 -18.10 3.12 -115.85 -0.36 -18.47 16 13 C 0.11 1.67 9.53 59.85 0.57 2.24 16 14 S 2.78 47.31 6.08 -107.50 -0.65 46.66 16 15 O -0.98 -17.20 15.85 -57.17 -0.91 -18.10 16 16 O -0.96 -19.77 15.65 -57.17 -0.89 -20.66 16 17 N -1.02 -12.75 3.01 -107.04 -0.32 -13.07 16 18 C 0.11 0.87 6.33 -3.55 -0.02 0.85 16 19 C 0.09 0.59 7.18 -4.02 -0.03 0.56 16 20 N -0.47 -4.95 3.11 -115.48 -0.36 -5.31 16 21 C 0.15 1.64 12.81 -90.33 -1.16 0.48 16 22 N -0.30 -4.53 12.23 29.60 0.36 -4.17 16 23 N -0.28 -4.58 12.21 32.79 0.40 -4.18 16 24 C 0.18 2.45 7.16 -155.30 -1.11 1.34 16 25 C 0.24 3.20 3.15 -68.39 -0.22 2.98 16 26 H 0.13 1.92 7.50 -51.93 -0.39 1.53 16 27 C -0.15 -1.65 9.45 37.16 0.35 -1.30 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 30 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 34 H 0.05 0.55 7.79 -51.93 -0.40 0.15 16 35 H 0.12 0.88 6.98 -51.93 -0.36 0.52 16 36 H 0.09 0.57 7.47 -51.93 -0.39 0.18 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.22 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.56 7.46 -51.92 -0.39 0.17 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -36.09 343.59 -8.42 -44.52 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -5.65 Total: -1.19 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.85 Total: -2.86 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: 0.49 Total: -70.91 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.80 Total: -38.76 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.37 kcal Atomic # 16 Polarization: 47.31 SS G_CDS: -0.65 Total: 46.66 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.09 -8.42 -44.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.583 kcal (2) G-P(sol) polarization free energy of solvation -36.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds