Wall clock time and date at job start Tue Mar 31 2020 05:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47248 * 2 1 4 4 C 1.50699 * 109.47194 * 120.00002 * 2 1 3 5 5 H 1.07995 * 120.00457 * 119.99928 * 4 2 1 6 6 C 1.37875 * 119.99896 * 299.99960 * 4 2 1 7 7 N 1.31517 * 120.00010 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00163 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47066 * 59.99936 * 8 6 4 10 10 H 1.48499 * 109.47154 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47097 * 299.99944 * 8 6 4 12 12 N 1.46505 * 109.47275 * 239.99602 * 2 1 3 13 13 C 1.46492 * 119.99968 * 300.00439 * 12 2 1 14 14 S 1.65600 * 119.99616 * 119.99855 * 12 2 1 15 15 O 1.42100 * 106.39951 * 203.54299 * 14 12 2 16 16 O 1.42097 * 106.40466 * 336.46164 * 14 12 2 17 17 N 1.65601 * 107.21541 * 90.00670 * 14 12 2 18 18 C 1.47073 * 120.94684 * 96.97024 * 17 14 12 19 19 C 1.53334 * 109.24282 * 116.42581 * 18 17 14 20 20 N 1.46217 * 109.17564 * 45.66916 * 19 18 17 21 21 C 1.34792 * 128.60958 * 161.61511 * 20 19 18 22 22 N 1.30824 * 107.12083 * 179.54334 * 21 20 19 23 23 N 1.28925 * 109.74159 * 0.13182 * 22 21 20 24 24 C 1.29731 * 109.43062 * 0.10550 * 23 22 21 25 25 C 1.47519 * 120.94189 * 276.68529 * 17 14 12 26 26 H 1.09000 * 109.95470 * 103.81373 * 25 17 14 27 27 C 1.52998 * 109.95987 * 342.53536 * 25 17 14 28 28 H 1.08998 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46715 * 300.00396 * 1 2 3 30 30 H 1.08995 * 109.46715 * 60.00451 * 1 2 3 31 31 H 0.97000 * 120.00089 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47711 * 89.99811 * 13 12 2 33 33 H 1.09007 * 109.47406 * 209.99628 * 13 12 2 34 34 H 1.09001 * 109.47295 * 329.99465 * 13 12 2 35 35 H 1.08992 * 109.51330 * 236.35976 * 18 17 14 36 36 H 1.09000 * 109.51242 * 356.50137 * 18 17 14 37 37 H 1.09003 * 109.51941 * 165.57342 * 19 18 17 38 38 H 1.08995 * 109.52823 * 285.69197 * 19 18 17 39 39 H 1.08002 * 126.43719 * 359.54706 * 21 20 19 40 40 H 1.09003 * 109.47067 * 62.98828 * 27 25 17 41 41 H 1.08997 * 109.47716 * 182.99017 * 27 25 17 42 42 H 1.08997 * 109.47385 * 302.99095 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.8064 -1.1209 4.0082 10 1 1.8270 -0.4198 5.2204 11 1 1.8258 -2.5201 4.0078 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 16 2.9705 0.1141 -2.2862 15 8 2.8228 -0.5647 -3.5258 16 8 2.6904 1.4972 -2.1193 17 7 4.5438 -0.1044 -1.8180 18 6 5.3757 -1.1528 -2.4277 19 6 6.5441 -0.4996 -3.1756 20 7 7.1372 0.5353 -2.3299 21 6 8.3518 1.1108 -2.4317 22 7 8.4443 1.9884 -1.4660 23 7 7.3584 1.9873 -0.7710 24 6 6.5341 1.1129 -1.2598 25 6 5.1526 0.7512 -0.7818 26 1 5.2189 0.2056 0.1594 27 6 4.3171 2.0191 -0.5943 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 0.7087 1.1613 3.4843 32 1 0.7376 -2.1445 -1.9993 33 1 2.4629 -2.5820 -1.9863 34 1 1.5295 -2.5969 -0.4707 35 1 5.7635 -1.8089 -1.6485 36 1 4.7747 -1.7334 -3.1275 37 1 7.2952 -1.2546 -3.4081 38 1 6.1800 -0.0515 -4.1000 39 1 9.1067 0.8890 -3.1716 40 1 3.3235 1.7498 -0.2361 41 1 4.8019 2.6694 0.1338 42 1 4.2306 2.5415 -1.5470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337750199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:06 Heat of formation + Delta-G solvation = 39.048624 kcal Electronic energy + Delta-G solvation = -28579.124037 eV Core-core repulsion = 24724.034717 eV Total energy + Delta-G solvation = -3855.089321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.23825 -37.87135 -37.21787 -36.29134 -35.50538 -34.63573 -32.69671 -31.88080 -30.01949 -29.20892 -28.01691 -25.67948 -25.26400 -24.28571 -23.68752 -22.22267 -20.87894 -20.28879 -18.38702 -17.70599 -17.27759 -16.85684 -16.55752 -16.30351 -15.97183 -15.32844 -15.01230 -14.57602 -14.53214 -13.95651 -13.58213 -13.42994 -13.24709 -13.10731 -12.80329 -12.37757 -12.15523 -12.09770 -11.90736 -11.78423 -11.52933 -11.42702 -11.31830 -11.07497 -11.04163 -10.90239 -10.44781 -10.39701 -10.32242 -10.19662 -10.15642 -10.11308 -9.45136 -9.31869 -9.02636 -8.54144 -8.10851 -6.16973 -4.26556 0.90755 1.82380 2.37698 2.92010 3.11846 3.21929 3.28867 3.30121 3.82619 4.13280 4.16576 4.29434 4.40874 4.59347 4.61607 4.82698 4.95674 5.12269 5.14045 5.36028 5.38155 5.44361 5.57086 5.62864 5.88588 6.02687 6.07757 6.13733 6.18796 6.36351 6.49539 6.58313 6.73965 6.79642 6.81718 6.92186 7.09610 7.34994 7.53579 7.69180 7.95124 8.15595 8.75515 8.75988 9.40875 10.87722 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013408 B = 0.005709 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.782662 B = 4903.529418 C = 5988.051159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.062 0.938 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.986 5.986 13 C 0.106 3.894 14 S 2.778 3.222 15 O -0.995 6.995 16 O -0.965 6.965 17 N -1.012 6.012 18 C 0.107 3.893 19 C 0.090 3.910 20 N -0.471 5.471 21 C 0.146 3.854 22 N -0.302 5.302 23 N -0.282 5.282 24 C 0.184 3.816 25 C 0.246 3.754 26 H 0.113 0.887 27 C -0.171 4.171 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.012 0.988 31 H 0.266 0.734 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.217 0.783 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.291 -6.208 -10.601 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.083 0.917 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.829 5.829 13 C -0.040 4.040 14 S 2.789 3.211 15 O -0.979 6.979 16 O -0.949 6.949 17 N -0.850 5.850 18 C -0.020 4.020 19 C -0.035 4.035 20 N -0.162 5.162 21 C -0.142 4.142 22 N -0.142 5.142 23 N -0.122 5.122 24 C -0.086 4.086 25 C 0.138 3.862 26 H 0.130 0.870 27 C -0.229 4.229 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.234 0.766 40 H 0.122 0.878 41 H 0.096 0.904 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.472 -4.525 -10.356 14.125 hybrid contribution 0.162 -1.890 0.230 1.911 sum 8.634 -6.415 -10.126 14.773 Atomic orbital electron populations 1.22065 0.97801 0.99765 1.00867 1.18923 0.92049 0.92849 0.80125 0.91712 1.21279 1.32387 1.13352 0.90035 0.91977 1.24891 0.94774 0.94892 0.98930 1.69849 1.35704 1.22368 1.24150 0.86622 0.79285 0.79628 0.82245 1.20142 1.21168 1.20359 1.57766 1.63456 1.21589 1.40043 1.21202 0.98920 0.81853 1.02025 1.02171 0.72001 0.73950 0.72996 1.93518 1.85608 1.76601 1.42146 1.93716 1.83720 1.31216 1.86261 1.58783 1.30416 1.43670 1.52090 1.21667 0.92007 0.90078 0.98277 1.22421 0.97138 0.89976 0.93968 1.46100 1.13867 1.31679 1.24602 1.26263 0.88707 0.96525 1.02671 1.74483 1.16662 1.18170 1.04850 1.74076 0.98133 1.17169 1.22773 1.25118 0.98990 0.95327 0.89139 1.19573 0.83669 0.92717 0.90257 0.86973 1.22739 1.00876 0.94732 1.04563 0.94831 0.88766 0.96863 0.92403 0.93699 0.93397 0.89969 0.89670 0.86475 0.87530 0.88828 0.76617 0.87790 0.90428 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.97 37.16 0.33 -2.91 16 2 C 0.26 5.85 2.47 -69.08 -0.17 5.68 16 3 H 0.07 1.57 4.59 -51.93 -0.24 1.33 16 4 C -0.53 -12.52 7.99 -34.44 -0.28 -12.79 16 5 H 0.06 1.42 7.33 -52.49 -0.38 1.04 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -22.92 11.32 55.43 0.63 -22.29 16 8 Si 0.89 19.54 29.54 -169.99 -5.02 14.52 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.99 -18.45 3.12 -115.85 -0.36 -18.81 16 13 C 0.11 1.69 9.28 59.84 0.56 2.25 16 14 S 2.78 49.15 5.83 -107.50 -0.63 48.52 16 15 O -0.99 -17.88 15.73 -57.17 -0.90 -18.78 16 16 O -0.97 -19.70 11.94 -57.17 -0.68 -20.38 16 17 N -1.01 -14.95 3.34 -107.25 -0.36 -15.31 16 18 C 0.11 1.11 6.43 -3.56 -0.02 1.09 16 19 C 0.09 0.79 7.18 -4.02 -0.03 0.76 16 20 N -0.47 -5.87 3.11 -115.62 -0.36 -6.23 16 21 C 0.15 1.74 12.81 -90.33 -1.16 0.59 16 22 N -0.30 -4.94 12.23 29.60 0.36 -4.58 16 23 N -0.28 -5.09 12.19 32.69 0.40 -4.69 16 24 C 0.18 2.94 7.15 -155.47 -1.11 1.82 16 25 C 0.25 3.99 3.86 -68.58 -0.26 3.73 16 26 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 27 C -0.17 -3.11 7.53 37.16 0.28 -2.83 16 28 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 29 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.63 7.79 -51.92 -0.40 0.22 16 34 H 0.08 1.34 7.02 -51.93 -0.36 0.98 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.12 1.09 6.91 -51.93 -0.36 0.73 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.22 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.10 2.12 3.95 -51.93 -0.20 1.92 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.56 6.56 -51.93 -0.34 1.22 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -31.48 339.93 -9.28 -40.77 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.53 Total: 3.15 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.96 Total: -1.02 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: 0.31 Total: -71.91 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.58 Total: -39.16 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.63 Total: 48.52 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.48 -9.28 -40.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.817 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds