Wall clock time and date at job start Tue Mar 31 2020 05:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47179 * 2 1 4 4 C 1.50705 * 109.46707 * 239.99794 * 2 1 3 5 5 H 1.08000 * 119.99995 * 245.36738 * 4 2 1 6 6 C 1.37873 * 119.99768 * 65.37796 * 4 2 1 7 7 N 1.31512 * 120.00165 * 6.84203 * 6 4 2 8 8 Si 1.86807 * 120.00089 * 186.84178 * 6 4 2 9 9 H 1.48494 * 109.47145 * 84.98804 * 8 6 4 10 10 H 1.48497 * 109.47300 * 204.99113 * 8 6 4 11 11 H 1.48503 * 109.46685 * 324.99360 * 8 6 4 12 12 N 1.46499 * 109.47169 * 120.00205 * 2 1 3 13 13 C 1.46498 * 120.00042 * 59.99796 * 12 2 1 14 14 S 1.65603 * 120.00111 * 239.99764 * 12 2 1 15 15 O 1.42095 * 106.40500 * 203.54074 * 14 12 2 16 16 O 1.42106 * 106.39925 * 336.46143 * 14 12 2 17 17 N 1.65598 * 107.21910 * 89.99654 * 14 12 2 18 18 C 1.47073 * 120.94972 * 269.72432 * 17 14 12 19 19 C 1.53814 * 108.99207 * 116.46720 * 18 17 14 20 20 N 1.46216 * 109.14693 * 45.82381 * 19 18 17 21 21 C 1.34793 * 128.60050 * 161.72091 * 20 19 18 22 22 N 1.30819 * 107.11941 * 179.38023 * 21 20 19 23 23 N 1.28921 * 109.74591 * 0.13798 * 22 21 20 24 24 C 1.29734 * 109.42570 * 0.11615 * 23 22 21 25 25 C 1.47526 * 120.94504 * 89.99917 * 17 14 12 26 26 H 1.09004 * 109.95365 * 342.48387 * 25 17 14 27 27 C 1.52999 * 109.95278 * 103.67021 * 25 17 14 28 28 H 1.09002 * 109.46865 * 293.02997 * 1 2 3 29 29 H 1.08997 * 109.46961 * 53.03009 * 1 2 3 30 30 H 1.08994 * 109.47143 * 173.03026 * 1 2 3 31 31 H 0.97006 * 120.00162 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47362 * 90.00470 * 13 12 2 33 33 H 1.09004 * 109.47231 * 210.00096 * 13 12 2 34 34 H 1.08998 * 109.47431 * 330.00051 * 13 12 2 35 35 H 1.08994 * 109.51247 * 236.39918 * 18 17 14 36 36 H 1.09004 * 109.50852 * 356.53674 * 18 17 14 37 37 H 1.09006 * 109.61671 * 285.87154 * 19 18 17 38 38 H 1.08999 * 109.49485 * 165.70235 * 19 18 17 39 39 H 1.08001 * 126.43757 * 359.35485 * 21 20 19 40 40 H 1.08999 * 109.46883 * 60.00632 * 27 25 17 41 41 H 1.09000 * 109.46803 * 180.02562 * 27 25 17 42 42 H 1.08997 * 109.47339 * 300.00573 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5798 -1.6364 -1.1338 6 6 1.7930 -0.1783 -2.4797 7 7 1.2467 1.0125 -2.5935 8 14 2.2447 -1.1488 -4.0106 9 1 1.1386 -2.0791 -4.3513 10 1 2.4705 -0.2130 -5.1413 11 1 3.4843 -1.9259 -3.7561 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9609 0.8090 3.3998 18 6 1.4378 2.1692 3.2015 19 6 -0.0928 2.1020 3.0652 20 7 -0.6297 1.2326 4.1111 21 6 -1.8939 1.1531 4.5718 22 7 -1.9092 0.2287 5.4973 23 7 -0.7271 -0.2663 5.6380 24 6 0.0868 0.3197 4.8151 25 6 1.5653 0.0836 4.6219 26 1 1.7592 -0.9822 4.5011 27 6 2.3435 0.6225 5.8239 28 1 -0.3633 0.4020 0.9458 29 1 -0.3633 0.6180 -0.8210 30 1 -0.3633 -1.0200 -0.1247 31 1 1.0780 1.3868 -3.4724 32 1 2.4158 -2.7378 0.9717 33 1 1.6238 -2.2853 2.5002 34 1 0.6905 -2.3002 0.9846 35 1 1.7024 2.7894 4.0578 36 1 1.8678 2.5961 2.2954 37 1 -0.3558 1.6999 2.0868 38 1 -0.5118 3.1025 3.1725 39 1 -2.7359 1.7423 4.2395 40 1 2.1276 1.6834 5.9505 41 1 2.0457 0.0812 6.7219 42 1 3.4118 0.4867 5.6557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337750200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:10 Heat of formation + Delta-G solvation = 22.431151 kcal Electronic energy + Delta-G solvation = -28526.388862 eV Core-core repulsion = 24670.578954 eV Total energy + Delta-G solvation = -3855.809908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30611 -37.98963 -37.00282 -36.32742 -35.45293 -34.73129 -32.67089 -31.95783 -30.05008 -29.38257 -28.49708 -25.76730 -25.27665 -24.24863 -23.97741 -22.48725 -21.00293 -19.87865 -18.50571 -17.87145 -17.31839 -17.14521 -16.60642 -16.37599 -15.89232 -15.19811 -15.07366 -14.57772 -14.47763 -14.08882 -13.73643 -13.46816 -13.32827 -13.01390 -12.87191 -12.41294 -12.39065 -12.12570 -11.97308 -11.79084 -11.69252 -11.61758 -11.39551 -11.35247 -11.27813 -11.10381 -10.93604 -10.64901 -10.49855 -10.47100 -10.17120 -10.12866 -9.57671 -9.38223 -9.21834 -8.55398 -8.15895 -6.21202 -4.24693 0.84074 1.76631 2.36519 2.82161 3.08323 3.22142 3.29156 3.32703 3.76439 3.97116 4.21351 4.30998 4.40687 4.55622 4.64272 4.85275 4.85584 4.96670 5.07725 5.12594 5.28317 5.40082 5.44377 5.48928 5.55928 5.65737 5.92686 5.97027 6.02078 6.05604 6.21958 6.28587 6.44738 6.54372 6.56884 6.75438 6.76710 7.18945 7.45782 7.59065 7.81354 8.11594 8.66368 8.77334 9.41017 10.86920 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017222 B = 0.004877 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.425343 B = 5739.638706 C = 6378.361623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.267 3.733 3 H 0.064 0.936 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.987 5.987 13 C 0.109 3.891 14 S 2.775 3.225 15 O -0.982 6.982 16 O -0.962 6.962 17 N -1.015 6.015 18 C 0.108 3.892 19 C 0.077 3.923 20 N -0.460 5.460 21 C 0.155 3.845 22 N -0.303 5.303 23 N -0.286 5.286 24 C 0.174 3.826 25 C 0.243 3.757 26 H 0.123 0.877 27 C -0.153 4.153 28 H 0.011 0.989 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.218 0.782 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 3.991 11.917 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.830 5.830 13 C -0.037 4.037 14 S 2.785 3.215 15 O -0.966 6.966 16 O -0.946 6.946 17 N -0.852 5.852 18 C -0.019 4.019 19 C -0.047 4.047 20 N -0.150 5.150 21 C -0.133 4.133 22 N -0.143 5.143 23 N -0.126 5.126 24 C -0.096 4.096 25 C 0.134 3.866 26 H 0.140 0.860 27 C -0.213 4.213 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.235 0.765 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.886 3.286 12.811 13.537 hybrid contribution -0.089 0.469 -2.110 2.163 sum -2.975 3.755 10.701 11.724 Atomic orbital electron populations 1.22145 0.98707 1.00746 0.98515 1.18762 0.90716 0.93371 0.80734 0.91848 1.21264 1.36231 1.08821 0.90002 0.91826 1.24897 0.94957 0.94708 0.99042 1.69897 1.43519 1.15063 1.24255 0.86530 0.78978 0.79825 0.82235 1.20506 1.21140 1.19821 1.57782 1.70003 1.19883 1.35357 1.21174 1.01809 0.81903 0.98845 1.02313 0.73745 0.73265 0.72183 1.93561 1.68624 1.59935 1.74521 1.93617 1.73384 1.55919 1.71662 1.59105 1.67554 1.24158 1.34342 1.21809 0.90830 0.83891 1.05323 1.22796 0.96025 0.94898 0.90970 1.46021 1.08859 1.30276 1.29848 1.26295 0.88033 1.01757 0.97213 1.74467 1.14120 1.09380 1.16349 1.74030 0.96328 1.22135 1.20109 1.24831 0.97446 0.92735 0.94599 1.19380 0.83451 0.98037 0.85710 0.85988 1.22090 1.00760 1.01766 0.96685 0.97058 0.90443 0.94197 0.92597 0.92861 0.93378 0.91020 0.89694 0.85808 0.87311 0.87507 0.76539 0.92084 0.90129 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.78 37.16 0.33 -2.52 16 2 C 0.27 5.94 2.49 -69.08 -0.17 5.76 16 3 H 0.06 1.55 6.88 -51.93 -0.36 1.19 16 4 C -0.52 -13.34 8.33 -34.44 -0.29 -13.63 16 5 H 0.06 1.63 7.52 -52.49 -0.39 1.24 16 6 C 0.07 1.74 5.27 -17.82 -0.09 1.64 16 7 N -0.89 -23.51 12.08 55.43 0.67 -22.84 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.99 -18.94 3.12 -115.85 -0.36 -19.31 16 13 C 0.11 1.86 9.48 59.85 0.57 2.43 16 14 S 2.77 49.74 6.08 -107.50 -0.65 49.08 16 15 O -0.98 -18.75 16.15 -57.17 -0.92 -19.67 16 16 O -0.96 -20.15 15.33 -57.17 -0.88 -21.03 16 17 N -1.02 -13.80 3.00 -106.77 -0.32 -14.12 16 18 C 0.11 1.18 6.36 -3.31 -0.02 1.16 16 19 C 0.08 0.76 7.20 -3.77 -0.03 0.73 16 20 N -0.46 -5.44 3.11 -115.20 -0.36 -5.80 16 21 C 0.15 1.79 12.81 -90.34 -1.16 0.63 16 22 N -0.30 -4.58 12.23 29.60 0.36 -4.22 16 23 N -0.29 -4.50 12.21 32.78 0.40 -4.10 16 24 C 0.17 2.38 7.17 -155.30 -1.11 1.27 16 25 C 0.24 3.12 3.14 -68.39 -0.21 2.90 16 26 H 0.12 1.60 7.47 -51.93 -0.39 1.21 16 27 C -0.15 -1.63 9.43 37.16 0.35 -1.28 16 28 H 0.01 0.18 5.61 -51.93 -0.29 -0.11 16 29 H 0.08 1.71 6.96 -51.93 -0.36 1.35 16 30 H 0.04 0.80 6.96 -51.93 -0.36 0.44 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 33 H 0.05 0.71 7.76 -51.93 -0.40 0.30 16 34 H 0.07 1.20 6.58 -51.93 -0.34 0.85 16 35 H 0.08 0.73 7.51 -51.93 -0.39 0.34 16 36 H 0.12 1.44 6.97 -51.93 -0.36 1.07 16 37 H 0.11 1.22 5.61 -51.93 -0.29 0.92 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.22 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 346.88 15.07 5.23 5.23 Total: -1.00 -32.81 346.88 -9.28 -42.09 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.58 Total: 0.25 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.84 Total: -0.91 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: 0.39 Total: -70.38 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -1.80 Total: -40.70 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.65 Total: 49.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.81 -9.28 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337750200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.522 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds