Wall clock time and date at job start Tue Mar 31 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53000 * 109.47266 * 164.99831 * 18 17 14 20 20 N 1.46496 * 109.47263 * 179.97438 * 19 18 17 21 21 C 1.38997 * 120.00309 * 180.02562 * 20 19 18 22 22 C 1.39338 * 120.09286 * 359.97438 * 21 20 19 23 23 N 1.31925 * 119.89085 * 179.97438 * 22 21 20 24 24 C 1.32270 * 120.08530 * 359.97438 * 23 22 21 25 25 C 1.38157 * 120.19299 * 359.97438 * 24 23 22 26 26 N 1.32250 * 120.11225 * 359.79504 * 25 24 23 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 32 32 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 33 33 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 34 34 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 35 35 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 36 36 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 37 37 H 1.08996 * 109.47610 * 300.00094 * 19 18 17 38 38 H 1.09005 * 109.47130 * 59.99553 * 19 18 17 39 39 H 0.97001 * 120.00075 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.05642 * 359.95496 * 22 21 20 41 41 H 1.07998 * 119.90270 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.94244 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6577 -1.3310 -1.7337 20 7 7.2496 -2.6708 -1.7567 21 6 8.6285 -2.8231 -1.6703 22 6 9.4497 -1.7026 -1.5622 23 7 10.7579 -1.8517 -1.4799 24 6 11.2898 -3.0626 -1.4994 25 6 10.4788 -4.1760 -1.6054 26 7 9.1661 -4.0357 -1.6838 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.7089 1.1611 3.4845 31 1 0.7376 -2.1442 -1.9996 32 1 2.4629 -2.5817 -1.9866 33 1 1.5295 -2.5968 -0.4711 34 1 5.0733 0.6551 -1.5281 35 1 4.7540 -2.0247 -1.0019 36 1 4.8736 -1.9405 -2.7759 37 1 7.0395 -0.7502 -2.5733 38 1 6.9198 -0.8343 -0.7994 39 1 6.6793 -3.4519 -1.8316 40 1 9.0160 -0.7136 -1.5461 41 1 12.3610 -3.1813 -1.4314 42 1 10.9173 -5.1629 -1.6205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337948507.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:40 Heat of formation + Delta-G solvation = -18.198454 kcal Electronic energy + Delta-G solvation = -26149.897938 eV Core-core repulsion = 22292.326198 eV Total energy + Delta-G solvation = -3857.571740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.16004 -37.44008 -36.74844 -36.22081 -35.36020 -34.94364 -33.96817 -32.67301 -30.64104 -29.15578 -27.83545 -25.58937 -25.24618 -25.05766 -23.60540 -22.51725 -20.85828 -19.05781 -18.27258 -17.65518 -17.26383 -16.86868 -16.72213 -16.42452 -16.00799 -15.66367 -15.12710 -14.93901 -14.75068 -14.62057 -14.28579 -13.50762 -13.30376 -13.05209 -12.84185 -12.70266 -12.28506 -12.06187 -11.87213 -11.70628 -11.65897 -11.57283 -11.45555 -11.44622 -11.28181 -11.03195 -10.92966 -10.51419 -10.45389 -10.28176 -10.14521 -9.51779 -9.30057 -9.26501 -8.54468 -8.16939 -8.05984 -6.15869 -4.25005 0.75448 1.08821 1.10593 2.61589 3.20385 3.27001 3.27385 3.44748 3.61172 4.02477 4.18036 4.20174 4.29311 4.32525 4.46103 4.77937 4.90352 4.99865 5.01132 5.11199 5.14804 5.27397 5.38298 5.52593 5.66065 5.84108 6.03449 6.08527 6.25402 6.42120 6.58479 6.81188 6.81316 7.02866 7.08710 7.09543 7.29324 7.42880 7.55113 7.71621 7.73448 7.98173 8.18752 8.77390 9.41658 10.89062 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011813 B = 0.003424 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.741618 B = 8175.931830 C = 9708.487465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.989 5.989 13 C 0.105 3.895 14 S 2.785 3.215 15 O -0.997 6.997 16 O -0.977 6.977 17 N -1.126 6.126 18 C 0.113 3.887 19 C 0.117 3.883 20 N -0.710 5.710 21 C 0.361 3.639 22 C -0.010 4.010 23 N -0.403 5.403 24 C -0.029 4.029 25 C 0.105 3.895 26 N -0.506 5.506 27 H 0.012 0.988 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.265 0.735 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.410 0.590 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.811 -7.637 -7.596 17.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.568 4.568 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.793 3.207 15 O -0.980 6.980 16 O -0.961 6.961 17 N -0.884 5.884 18 C -0.014 4.014 19 C -0.009 4.009 20 N -0.343 5.343 21 C 0.121 3.879 22 C -0.179 4.179 23 N -0.117 5.117 24 C -0.189 4.189 25 C -0.055 4.055 26 N -0.229 5.229 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.247 0.753 40 H 0.182 0.818 41 H 0.181 0.819 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.241 -6.971 -8.276 17.100 hybrid contribution 0.445 -0.779 1.457 1.711 sum 13.686 -7.750 -6.819 17.143 Atomic orbital electron populations 1.22057 0.97915 0.99688 1.00803 1.18735 0.91927 0.92735 0.80064 0.92300 1.21313 1.32117 1.13166 0.90172 0.92017 1.24921 0.94907 0.94944 0.98989 1.69867 1.35996 1.22487 1.24006 0.86595 0.79089 0.79693 0.82178 1.21201 1.20258 1.20345 1.57705 1.64206 1.21425 1.39849 1.21220 0.99056 0.82000 1.01885 1.01780 0.72417 0.73191 0.73285 1.93548 1.85878 1.76399 1.42175 1.93609 1.83349 1.32327 1.86826 1.55980 1.32712 1.14123 1.85620 1.21192 0.92197 0.84992 1.03056 1.21657 0.92988 0.83373 1.02888 1.44308 1.02196 1.09038 1.78758 1.19349 0.86517 0.90746 0.91261 1.23136 0.89674 0.98960 1.06116 1.68216 1.11901 1.25774 1.05768 1.23319 1.01776 0.88687 1.05146 1.23452 0.88372 1.00686 0.93025 1.67957 1.13745 1.23320 1.17913 0.96846 0.94862 0.88899 0.92506 0.93734 0.93333 0.90118 0.75204 0.90473 0.89981 0.90616 0.90353 0.75345 0.81822 0.81867 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.97 37.16 0.33 -3.01 16 2 C 0.27 6.24 2.62 -69.09 -0.18 6.06 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.17 16 4 C -0.53 -12.92 7.99 -34.44 -0.28 -13.19 16 5 H 0.06 1.45 7.33 -52.49 -0.38 1.06 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.72 11.32 55.43 0.63 -23.09 16 8 Si 0.90 19.85 29.54 -169.99 -5.02 14.83 16 9 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 N -0.99 -19.02 3.12 -115.85 -0.36 -19.38 16 13 C 0.10 1.72 9.28 59.85 0.56 2.27 16 14 S 2.78 49.85 6.09 -107.50 -0.66 49.20 16 15 O -1.00 -18.84 16.68 -57.17 -0.95 -19.80 16 16 O -0.98 -20.90 16.70 -57.17 -0.95 -21.86 16 17 N -1.13 -15.09 6.05 -10.61 -0.06 -15.16 16 18 C 0.11 1.24 6.36 -4.04 -0.03 1.21 16 19 C 0.12 1.04 5.05 -4.04 -0.02 1.02 16 20 N -0.71 -6.76 5.73 -60.31 -0.35 -7.11 16 21 C 0.36 3.95 7.67 -154.73 -1.19 2.76 16 22 C -0.01 -0.10 10.49 -17.10 -0.18 -0.28 16 23 N -0.40 -4.53 10.49 -12.88 -0.14 -4.67 16 24 C -0.03 -0.26 11.21 -17.39 -0.19 -0.45 16 25 C 0.11 0.92 11.21 -17.40 -0.20 0.72 16 26 N -0.51 -5.65 10.53 -12.24 -0.13 -5.78 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.66 7.79 -51.92 -0.40 0.25 16 33 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 34 H 0.41 4.81 8.65 -34.47 -0.30 4.51 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.87 7.75 -51.93 -0.40 0.46 16 37 H 0.08 0.60 7.94 -51.93 -0.41 0.18 16 38 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 39 H 0.41 3.63 8.60 -40.82 -0.35 3.28 16 40 H 0.16 1.44 6.73 -52.49 -0.35 1.09 16 41 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -32.74 363.00 -9.69 -42.43 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.70 Total: 6.22 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.46 Total: -1.31 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -0.41 Total: -75.17 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -1.91 Total: -41.66 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Atomic # 16 Polarization: 49.85 SS G_CDS: -0.66 Total: 49.20 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.74 -9.69 -42.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337948507.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.231 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds