Wall clock time and date at job start Tue Mar 31 2020 06:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00070 * 2 1 4 4 C 1.50697 * 109.47099 * 270.00389 * 3 2 1 5 5 H 1.07999 * 120.00190 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00088 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99904 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00152 * 179.97438 * 6 4 3 9 9 H 1.48493 * 109.47204 * 59.99952 * 8 6 4 10 10 H 1.48506 * 109.46731 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47045 * 299.99610 * 8 6 4 12 12 C 1.34779 * 119.99781 * 180.02562 * 2 1 3 13 13 O 1.21367 * 119.99499 * 174.33775 * 12 2 1 14 14 C 1.49335 * 120.00188 * 354.33646 * 12 2 1 15 15 O 1.21384 * 120.00182 * 359.72032 * 14 12 2 16 16 N 1.34781 * 120.00047 * 179.71627 * 14 12 2 17 17 C 1.39810 * 119.99889 * 185.22534 * 16 14 12 18 18 C 1.39433 * 120.43066 * 325.18657 * 17 16 14 19 19 C 1.38300 * 118.42362 * 179.97438 * 18 17 16 20 20 C 1.38987 * 119.18439 * 0.02562 * 19 18 17 21 21 N 1.39877 * 119.60319 * 179.97438 * 20 19 18 22 22 C 1.35819 * 126.10300 * 180.02562 * 21 20 19 23 23 C 1.35292 * 107.61900 * 179.74774 * 22 21 20 24 24 C 1.39933 * 107.97029 * 0.37102 * 23 22 21 25 25 N 1.30842 * 108.36166 * 359.62283 * 24 23 22 26 26 N 1.32294 * 120.79121 * 0.26000 * 20 19 18 27 27 C 1.31849 * 121.72683 * 359.46951 * 26 20 19 28 28 H 1.09005 * 109.47038 * 264.12399 * 1 2 3 29 29 H 1.08997 * 109.47316 * 24.13055 * 1 2 3 30 30 H 1.09003 * 109.47312 * 144.13181 * 1 2 3 31 31 H 1.09001 * 109.46764 * 30.00285 * 3 2 1 32 32 H 1.09000 * 109.47185 * 149.99732 * 3 2 1 33 33 H 0.96998 * 120.00172 * 179.97438 * 7 6 4 34 34 H 0.97004 * 119.99608 * 5.23022 * 16 14 12 35 35 H 1.08002 * 120.79300 * 359.96180 * 18 17 16 36 36 H 1.07998 * 120.41241 * 179.97438 * 19 18 17 37 37 H 1.08007 * 126.19109 * 0.02562 * 22 21 20 38 38 H 1.08000 * 126.01859 * 180.22498 * 23 22 21 39 39 H 1.07995 * 125.82186 * 179.88728 * 24 23 22 40 40 H 1.07994 * 119.63296 * 180.26831 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5524 3.6186 -0.6731 8 14 3.4378 3.4169 -3.4339 9 1 2.1405 3.5937 -4.1346 10 1 4.1791 4.7037 -3.4338 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3481 -1.1697 -0.1042 14 6 1.3976 -2.4574 0.1265 15 8 0.1887 -2.4547 0.2354 16 7 2.0710 -3.6249 0.1203 17 6 1.3715 -4.8354 0.1290 18 6 0.1711 -4.9523 0.8286 19 6 -0.4866 -6.1688 0.8088 20 6 0.0669 -7.2270 0.0978 21 7 -0.5906 -8.4613 0.0723 22 6 -0.1709 -9.5785 -0.5762 23 6 -1.0823 -10.5517 -0.3472 24 6 -2.0939 -10.0153 0.4572 25 7 -1.7995 -8.7660 0.7114 26 7 1.2110 -7.0825 -0.5505 27 6 1.8635 -5.9368 -0.5584 28 1 -0.3633 -0.1052 1.0223 29 1 -0.3634 0.9378 -0.4201 30 1 -0.3634 -0.8328 -0.6021 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1384 0.5139 33 1 4.0292 4.4445 -0.8503 34 1 3.0410 -3.6253 0.1097 35 1 -0.2355 -4.1130 1.3732 36 1 -1.4185 -6.2952 1.3399 37 1 0.7301 -9.6740 -1.1642 38 1 -1.0382 -11.5639 -0.7214 39 1 -2.9665 -10.5436 0.8116 40 1 2.7928 -5.8553 -1.1025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338829507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:54 Heat of formation + Delta-G solvation = 80.233200 kcal Electronic energy + Delta-G solvation = -26375.170674 eV Core-core repulsion = 22386.423299 eV Total energy + Delta-G solvation = -3988.747375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88168 -41.09197 -39.87094 -38.12555 -36.03348 -34.80922 -33.14716 -32.65794 -32.63192 -30.53796 -29.20249 -28.11580 -26.35876 -25.02742 -24.44912 -23.67684 -22.16079 -21.22298 -21.17261 -19.75596 -18.72379 -17.94681 -17.32896 -16.72479 -16.53860 -15.93682 -15.88238 -15.70806 -15.37252 -15.07355 -14.58369 -14.45581 -14.13235 -14.04549 -13.67424 -13.50190 -13.23799 -13.09038 -12.99291 -12.49013 -12.21172 -12.10658 -11.42370 -11.39927 -11.20440 -11.06599 -10.87895 -10.63976 -10.42233 -10.26609 -10.20138 -9.86707 -9.76194 -9.34698 -8.95815 -8.53530 -8.23115 -7.90711 -6.15145 -4.20800 0.27377 0.83447 1.52598 1.79230 1.88466 2.43415 2.47711 3.27136 3.31321 3.33830 3.38361 3.58232 3.82060 3.94697 4.17698 4.35394 4.44784 4.54306 4.61625 4.70265 4.83971 5.08429 5.19712 5.27917 5.33309 5.44354 5.59513 5.70674 5.80271 5.87206 6.02635 6.16420 6.23865 6.41124 6.67224 6.75431 6.92972 7.03477 7.17672 7.26228 7.52954 7.65421 7.80296 8.05356 8.07757 8.49398 8.82834 9.44363 10.93016 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.030563 B = 0.002121 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.932227 B =13201.115442 C =13466.319305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.560 5.560 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.494 3.506 13 O -0.519 6.519 14 C 0.511 3.489 15 O -0.501 6.501 16 N -0.646 5.646 17 C 0.092 3.908 18 C -0.056 4.056 19 C -0.140 4.140 20 C 0.345 3.655 21 N -0.322 5.322 22 C 0.079 3.921 23 C -0.269 4.269 24 C 0.061 3.939 25 N -0.285 5.285 26 N -0.486 5.486 27 C 0.115 3.885 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.427 0.573 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.182 0.818 38 H 0.155 0.845 39 H 0.192 0.808 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.071 -24.247 3.049 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.291 5.291 3 C 0.124 3.876 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.274 3.726 13 O -0.396 6.396 14 C 0.294 3.706 15 O -0.374 6.374 16 N -0.294 5.294 17 C -0.006 4.006 18 C -0.084 4.084 19 C -0.163 4.163 20 C 0.117 3.883 21 N -0.099 5.099 22 C -0.063 4.063 23 C -0.298 4.298 24 C -0.127 4.127 25 N -0.104 5.104 26 N -0.198 5.198 27 C -0.047 4.047 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.266 0.734 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.199 0.801 38 H 0.173 0.827 39 H 0.209 0.791 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -8.162 -23.499 3.246 25.087 hybrid contribution 0.543 0.243 -1.035 1.194 sum -7.619 -23.256 2.211 24.572 Atomic orbital electron populations 1.22063 0.79409 1.03447 1.01654 1.48151 1.07662 1.06737 1.66588 1.19541 0.92614 0.77213 0.98185 1.21316 1.37194 1.06618 0.91845 0.92279 1.24933 0.95137 0.96207 0.97702 1.69913 1.37988 1.14331 1.30902 0.86502 0.78456 0.77862 0.84297 1.20153 1.21087 1.20085 1.19419 0.87543 0.84209 0.81393 1.90765 1.13240 1.86359 1.49278 1.21123 0.87730 0.85673 0.76028 1.90683 1.13996 1.87030 1.45741 1.43163 1.11648 1.02798 1.71749 1.18807 0.95577 0.87343 0.98874 1.21757 0.93522 0.97579 0.95537 1.21546 1.02381 0.91236 1.01108 1.17666 0.90254 0.83678 0.96680 1.45756 1.17631 1.07530 1.39012 1.22935 1.00557 0.85663 0.97143 1.21653 0.97443 1.01510 1.09162 1.24148 0.99807 0.91677 0.97112 1.77477 0.96870 1.16969 1.19117 1.66802 1.06835 1.26147 1.20063 1.22364 0.99968 0.86059 0.96261 0.93017 0.90917 0.90047 0.94024 0.93466 0.92469 0.73372 0.81996 0.83034 0.80062 0.82697 0.79084 0.80966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 9.27 59.85 0.55 1.87 16 2 N -0.56 -11.64 2.86 -183.51 -0.52 -12.17 16 3 C 0.24 6.07 5.09 -5.20 -0.03 6.04 16 4 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.49 9.69 7.72 -11.64 -0.09 9.60 16 13 O -0.52 -11.50 16.12 5.48 0.09 -11.41 16 14 C 0.51 7.94 7.62 -11.64 -0.09 7.86 16 15 O -0.50 -7.93 10.72 5.47 0.06 -7.87 16 16 N -0.65 -7.93 5.33 -10.18 -0.05 -7.99 16 17 C 0.09 1.05 6.33 -83.55 -0.53 0.52 16 18 C -0.06 -0.65 8.80 -39.11 -0.34 -1.00 16 19 C -0.14 -1.60 9.69 -39.28 -0.38 -1.98 16 20 C 0.34 4.14 7.55 -154.30 -1.17 2.97 16 21 N -0.32 -3.72 3.81 -12.08 -0.05 -3.76 16 22 C 0.08 0.74 11.10 -16.84 -0.19 0.55 16 23 C -0.27 -2.05 10.80 -40.00 -0.43 -2.48 16 24 C 0.06 0.50 12.02 -17.34 -0.21 0.29 16 25 N -0.29 -3.21 11.83 30.64 0.36 -2.84 16 26 N -0.49 -5.53 9.85 -12.10 -0.12 -5.65 16 27 C 0.11 1.16 11.12 -17.32 -0.19 0.97 16 28 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 30 H 0.08 1.34 5.84 -51.93 -0.30 1.03 16 31 H 0.04 1.05 8.07 -51.93 -0.42 0.63 16 32 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 33 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.43 4.59 8.30 -40.82 -0.34 4.25 16 35 H 0.16 1.94 6.29 -52.49 -0.33 1.61 16 36 H 0.15 1.61 7.68 -52.49 -0.40 1.21 16 37 H 0.18 1.34 8.05 -52.48 -0.42 0.92 16 38 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.19 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -32.91 354.80 -6.94 -39.85 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.26 Total: 3.11 kcal Atomic # 6 Polarization: 15.51 SS G_CDS: -3.51 Total: 12.00 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.36 Total: -57.28 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.15 Total: -19.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.91 -6.94 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338829507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.086 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds