Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33248 * 125.52929 * 2 1 4 4 C 1.30825 * 109.83041 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.96241 * 179.97438 * 4 3 2 6 6 N 1.34430 * 108.07862 * 359.97438 * 4 3 2 7 7 C 1.46510 * 126.82112 * 179.97438 * 6 4 3 8 8 C 1.53495 * 114.20485 * 239.99589 * 7 6 4 9 9 N 1.47059 * 87.98669 * 220.34965 * 8 7 6 10 10 S 1.65608 * 136.05519 * 207.08940 * 9 8 7 11 11 O 1.42104 * 106.39724 * 203.53814 * 10 9 8 12 12 O 1.42097 * 106.40199 * 336.45725 * 10 9 8 13 13 N 1.65601 * 107.21642 * 90.00188 * 10 9 8 14 14 C 1.46507 * 119.99820 * 269.99450 * 13 10 9 15 15 C 1.46499 * 120.00284 * 90.00037 * 13 10 9 16 16 C 1.50694 * 109.47144 * 94.99528 * 15 13 10 17 17 H 1.08007 * 120.00294 * 0.02562 * 16 15 13 18 18 C 1.37876 * 120.00112 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99769 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00415 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46910 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46860 * 120.00398 * 20 18 16 23 23 H 1.48492 * 109.47489 * 240.00503 * 20 18 16 24 24 C 1.47066 * 87.88539 * 27.34548 * 9 8 7 25 25 N 1.30721 * 125.52886 * 180.27744 * 2 1 3 26 26 H 1.08998 * 109.46863 * 90.02871 * 1 2 3 27 27 H 1.09007 * 109.47424 * 210.02377 * 1 2 3 28 28 H 1.09003 * 109.47256 * 330.03082 * 1 2 3 29 29 H 1.08998 * 109.47424 * 270.04163 * 5 4 3 30 30 H 1.09005 * 109.46922 * 30.03861 * 5 4 3 31 31 H 1.08998 * 109.47380 * 150.03843 * 5 4 3 32 32 H 1.08999 * 113.41509 * 13.20131 * 7 6 4 33 33 H 1.09000 * 113.46461 * 105.56776 * 8 7 6 34 34 H 1.09002 * 113.52329 * 335.14097 * 8 7 6 35 35 H 1.09004 * 109.46614 * 90.00144 * 14 13 10 36 36 H 1.08991 * 109.47229 * 210.00435 * 14 13 10 37 37 H 1.08997 * 109.46913 * 330.00633 * 14 13 10 38 38 H 1.09003 * 109.46599 * 214.99921 * 15 13 10 39 39 H 1.08999 * 109.46720 * 334.99396 * 15 13 10 40 40 H 0.97003 * 119.99935 * 179.97438 * 19 18 16 41 41 H 1.08993 * 113.46789 * 87.43696 * 24 9 8 42 42 H 1.09000 * 113.46381 * 217.87763 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7304 0.0006 5 6 4.7227 1.6652 0.0002 6 7 3.5965 -0.6127 0.0015 7 6 4.8048 -1.4413 0.0018 8 6 4.9276 -2.3755 -1.2099 9 7 5.4300 -3.4114 -0.2950 10 16 6.4211 -4.7324 -0.4183 11 8 6.0699 -5.5987 0.6520 12 8 6.3913 -5.1304 -1.7821 13 7 7.9652 -4.2168 -0.1151 14 6 8.8115 -3.7510 -1.2165 15 6 8.4851 -4.2265 1.2545 16 6 9.2490 -5.5034 1.4928 17 1 9.3387 -6.2345 0.7029 18 6 9.8344 -5.7380 2.7189 19 7 9.7256 -4.8475 3.6806 20 14 10.7807 -7.3212 3.0146 21 1 10.7552 -8.1505 1.7830 22 1 12.1874 -6.9989 3.3649 23 1 10.1524 -8.0724 4.1308 24 6 4.6598 -2.7617 0.7763 25 7 2.2666 -1.0638 -0.0052 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8903 0.5134 29 1 5.0075 1.8905 -1.0275 30 1 4.4557 2.5888 0.5140 31 1 5.5599 1.1926 0.5139 32 1 5.7128 -0.8830 0.2297 33 1 5.6670 -2.0451 -1.9395 34 1 3.9694 -2.6259 -1.6650 35 1 8.6745 -2.6780 -1.3513 36 1 9.8562 -3.9575 -0.9845 37 1 8.5333 -4.2707 -2.1333 38 1 9.1490 -3.3738 1.3971 39 1 7.6554 -4.1626 1.9585 40 1 10.1371 -5.0127 4.5434 41 1 3.6306 -3.1135 0.8456 42 1 5.1712 -2.7604 1.7389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340051813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = 58.188567 kcal Electronic energy + Delta-G solvation = -26568.371878 eV Core-core repulsion = 22714.112527 eV Total energy + Delta-G solvation = -3854.259350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35758 -39.47615 -36.71935 -35.59661 -35.27592 -34.05439 -32.63840 -32.50713 -29.86187 -28.65421 -27.86830 -26.81359 -26.26551 -25.14808 -22.52422 -22.19623 -20.90930 -20.15612 -18.53074 -17.68971 -17.26364 -16.67067 -16.46045 -16.30455 -15.67343 -14.77351 -14.68009 -14.38785 -14.12729 -14.11108 -13.68273 -13.47737 -13.34938 -13.13607 -12.98010 -12.87105 -12.62652 -12.48461 -12.37010 -12.24274 -12.05950 -11.74895 -11.59352 -11.42545 -11.31299 -11.22738 -11.15911 -10.77482 -10.60326 -10.10428 -10.09947 -9.82868 -9.79054 -9.44049 -9.20745 -8.51549 -8.18288 -6.13737 -4.17833 0.90857 1.39109 2.03890 2.70869 3.26741 3.31916 3.34828 3.40335 3.80642 3.86882 3.92959 4.21181 4.38974 4.42272 4.48553 4.51434 4.71067 5.07787 5.11241 5.15834 5.21585 5.33897 5.36214 5.41497 5.46004 5.55045 5.56919 5.57530 5.81432 5.83192 5.87724 6.06375 6.17258 6.32099 6.33796 6.48301 6.65048 7.10372 7.28672 7.49090 7.83867 7.96544 8.11765 8.84825 9.48017 10.94932 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.003128 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.753984 B = 8949.996699 C = 9268.432000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.219 3.781 3 N -0.545 5.545 4 C 0.281 3.719 5 C -0.079 4.079 6 N -0.366 5.366 7 C 0.109 3.891 8 C 0.129 3.871 9 N -1.048 6.048 10 S 2.802 3.198 11 O -0.951 6.951 12 O -0.988 6.988 13 N -0.992 5.992 14 C 0.095 3.905 15 C 0.257 3.743 16 C -0.530 4.530 17 H 0.061 0.939 18 C 0.062 3.938 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.281 1.281 24 C 0.133 3.867 25 N -0.313 5.313 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.098 0.902 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 14.446 -8.335 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 N -0.274 5.274 4 C 0.005 3.995 5 C -0.138 4.138 6 N -0.157 5.157 7 C 0.004 3.996 8 C 0.002 3.998 9 N -0.886 5.886 10 S 2.812 3.188 11 O -0.935 6.935 12 O -0.972 6.972 13 N -0.835 5.835 14 C -0.051 4.051 15 C 0.135 3.865 16 C -0.569 4.569 17 H 0.079 0.921 18 C -0.140 4.140 19 N -0.534 5.534 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.207 1.207 24 C 0.006 3.994 25 N -0.142 5.142 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.584 12.916 -8.372 19.264 hybrid contribution 1.036 -0.526 0.396 1.227 sum -10.548 12.390 -7.976 18.122 Atomic orbital electron populations 1.20069 0.83993 1.03964 1.03588 1.24273 0.98199 0.85758 0.98078 1.70363 0.99805 1.30941 1.26314 1.24381 0.95305 0.83859 0.95918 1.20425 0.91372 0.97494 1.04551 1.50255 1.05574 1.05280 1.54565 1.23813 0.84547 0.90909 1.00376 1.22721 1.00420 0.84224 0.92458 1.60916 1.61360 1.46738 1.19606 1.01463 0.72389 0.72072 0.72906 1.93640 1.83031 1.60499 1.56342 1.93531 1.87224 1.80103 1.36331 1.57704 1.28188 1.81168 1.16403 1.21364 0.97394 0.97502 0.88884 1.19082 0.95123 0.97972 0.74334 1.21510 1.33177 1.03921 0.98330 0.92083 1.24932 0.96314 0.97029 0.95713 1.69920 1.44783 1.34824 1.03910 0.86442 0.79283 0.83267 0.78477 1.19613 1.20904 1.20742 1.22729 0.97829 0.86630 0.92178 1.78012 0.86456 1.22543 1.27177 0.90002 0.90013 0.89704 0.88963 0.88441 0.89667 0.83506 0.89560 0.89095 0.94311 0.90160 0.91582 0.94624 0.94562 0.92674 0.88368 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.00 0.38 -0.08 16 2 C 0.22 2.64 8.14 -156.84 -1.28 1.36 16 3 N -0.55 -6.72 11.19 -8.16 -0.09 -6.82 16 4 C 0.28 2.98 7.98 -155.70 -1.24 1.74 16 5 C -0.08 -0.49 10.17 36.00 0.37 -0.12 16 6 N -0.37 -4.20 3.75 -51.56 -0.19 -4.39 16 7 C 0.11 1.14 4.95 -67.67 -0.34 0.80 16 8 C 0.13 1.49 8.54 -8.52 -0.07 1.42 16 9 N -1.05 -15.71 4.29 -125.06 -0.54 -16.24 16 10 S 2.80 55.27 6.64 -107.50 -0.71 54.56 16 11 O -0.95 -22.81 17.11 -57.17 -0.98 -23.79 16 12 O -0.99 -20.53 16.74 -57.17 -0.96 -21.48 16 13 N -0.99 -19.76 3.23 -123.05 -0.40 -20.16 16 14 C 0.10 1.54 10.68 59.85 0.64 2.17 16 15 C 0.26 6.18 5.08 -5.20 -0.03 6.15 16 16 C -0.53 -14.59 9.38 -34.44 -0.32 -14.91 16 17 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.90 -25.53 13.29 55.43 0.74 -24.79 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.13 1.75 8.43 -8.38 -0.07 1.68 16 25 N -0.31 -4.11 12.11 32.42 0.39 -3.72 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.40 7.14 -51.93 -0.37 0.03 16 32 H 0.15 1.14 7.05 -51.93 -0.37 0.77 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 37 H 0.07 1.03 7.02 -51.93 -0.36 0.66 16 38 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.10 1.33 7.71 -51.93 -0.40 0.93 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -36.34 370.63 -10.32 -46.66 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -6.09 Total: -3.82 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.06 Total: 1.86 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -0.09 Total: -76.12 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.94 Total: -45.27 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.71 Total: 54.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.34 -10.32 -46.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340051813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.853 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds