Wall clock time and date at job start Tue Mar 31 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00153 * 2 1 4 4 O 1.20828 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99972 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46687 * 179.97438 * 5 3 2 7 7 C 1.36391 * 125.84933 * 84.97521 * 6 5 3 8 8 C 1.35085 * 108.93279 * 180.02562 * 7 6 5 9 9 C 1.41108 * 108.23895 * 359.97438 * 8 7 6 10 10 N 1.33025 * 126.37481 * 179.97438 * 9 8 7 11 11 C 1.33771 * 119.99786 * 0.03519 * 10 9 8 12 12 O 1.21911 * 120.00555 * 359.97438 * 11 10 9 13 13 C 1.47878 * 119.99590 * 179.97438 * 11 10 9 14 14 C 1.39957 * 119.88794 * 359.72859 * 13 11 10 15 15 C 1.36305 * 120.11532 * 179.71002 * 14 13 11 16 16 C 1.40909 * 119.88319 * 0.58236 * 15 14 13 17 17 C 1.41064 * 120.11469 * 179.67173 * 16 15 14 18 18 H 1.08004 * 119.99652 * 205.07853 * 17 16 15 19 19 C 1.40216 * 119.99650 * 25.08026 * 17 16 15 20 20 N 1.30644 * 120.00336 * 18.01897 * 19 17 16 21 21 Si 1.86803 * 119.99461 * 198.02241 * 19 17 16 22 22 H 1.48503 * 109.47281 * 94.52643 * 21 19 17 23 23 H 1.48501 * 109.46894 * 214.52774 * 21 19 17 24 24 H 1.48500 * 109.47177 * 334.52611 * 21 19 17 25 25 C 1.40916 * 119.77230 * 359.69164 * 16 15 14 26 26 C 1.36295 * 119.88351 * 0.02562 * 25 16 15 27 27 N 1.37438 * 107.24828 * 0.02562 * 9 8 7 28 28 H 0.97000 * 126.35748 * 179.97438 * 27 9 8 29 29 H 1.09001 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47071 * 299.99611 * 1 2 3 31 31 H 1.08999 * 109.47278 * 60.00242 * 1 2 3 32 32 H 1.08994 * 109.47619 * 60.00204 * 5 3 2 33 33 H 1.08994 * 109.46926 * 299.99368 * 5 3 2 34 34 H 1.08001 * 125.53259 * 0.05714 * 7 6 5 35 35 H 1.07997 * 125.88102 * 179.74292 * 8 7 6 36 36 H 1.07996 * 119.94364 * 359.97438 * 14 13 11 37 37 H 1.08002 * 120.06117 * 180.24728 * 15 14 13 38 38 H 0.97004 * 120.00196 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.05593 * 179.97438 * 25 16 15 40 40 H 1.08007 * 119.94398 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.1157 3.4735 1.1000 8 6 4.5144 4.7032 0.7079 9 6 4.6418 4.6990 -0.6974 10 7 5.0135 5.7244 -1.4589 11 6 5.3097 6.9018 -0.8973 12 8 5.2385 7.0353 0.3124 13 6 5.7235 8.0415 -1.7438 14 6 5.8100 7.8840 -3.1318 15 6 6.1852 8.9331 -3.9171 16 6 6.4981 10.1743 -3.3280 17 6 6.8937 11.2612 -4.1354 18 1 7.5036 12.0494 -3.7190 19 6 6.4950 11.3184 -5.4785 20 7 5.4956 10.5874 -5.8949 21 14 7.3933 12.4398 -6.6723 22 1 8.4490 11.6688 -7.3768 23 1 6.4294 12.9800 -7.6645 24 1 8.0153 13.5620 -5.9247 25 6 6.4150 10.3259 -1.9295 26 6 6.0332 9.2723 -1.1537 27 7 4.3092 3.4386 -1.1330 28 1 4.3022 3.1314 -2.0530 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 3.9558 0.7809 -0.8908 33 1 3.9563 0.7806 0.8892 34 1 3.9332 3.1683 2.1197 35 1 4.6997 5.5456 1.3577 36 1 5.5749 6.9309 -3.5819 37 1 6.2478 8.8117 -4.9884 38 1 5.2195 10.6273 -6.8240 39 1 6.6542 11.2750 -1.4731 40 1 5.9688 9.3875 -0.0817 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340124314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:52 Heat of formation + Delta-G solvation = 22.625185 kcal Electronic energy + Delta-G solvation = -25993.622781 eV Core-core repulsion = 21970.084584 eV Total energy + Delta-G solvation = -4023.538197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62795 -40.71775 -38.48436 -37.15739 -36.84163 -34.28726 -33.60800 -32.00064 -31.52050 -29.99749 -29.16614 -28.72534 -26.83028 -25.57502 -22.79014 -22.07970 -21.74341 -21.01805 -20.53213 -19.15633 -18.48950 -17.77714 -17.27245 -17.20730 -16.83784 -15.82317 -15.54720 -15.18885 -15.06389 -14.85748 -14.32939 -14.08211 -13.86685 -13.62002 -13.27886 -13.19752 -12.90087 -12.83198 -12.66285 -12.59078 -11.85436 -11.76748 -11.41433 -11.33884 -11.15385 -11.10841 -10.78395 -10.53989 -10.36284 -9.82745 -9.54268 -9.32711 -9.23266 -9.02134 -8.24505 -7.51696 -7.37582 -7.17722 -6.81880 -4.37063 0.92672 1.22817 1.48899 2.09414 2.44880 2.91865 3.06109 3.10236 3.25412 3.32867 3.42105 3.89340 4.01577 4.09982 4.28334 4.42780 4.47151 4.55916 4.64944 4.98726 5.01430 5.11432 5.46354 5.56160 5.69896 5.87064 6.15466 6.48999 6.55494 6.63236 6.82072 7.01271 7.02004 7.10661 7.15731 7.34659 7.38534 7.57075 7.73570 8.03150 8.11246 8.21651 8.27745 8.33250 8.66457 8.86206 9.01835 9.58324 10.09949 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024098 B = 0.002078 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.653606 B =13468.128203 C =14219.464750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.427 3.573 4 O -0.480 6.480 5 C 0.154 3.846 6 N -0.392 5.392 7 C 0.134 3.866 8 C -0.276 4.276 9 C 0.477 3.523 10 N -0.650 5.650 11 C 0.551 3.449 12 O -0.590 6.590 13 C -0.252 4.252 14 C -0.038 4.038 15 C -0.190 4.190 16 C 0.128 3.872 17 C -0.449 4.449 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.775 5.775 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.241 4.241 26 C -0.032 4.032 27 N -0.488 5.488 28 H 0.445 0.555 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.188 0.812 35 H 0.193 0.807 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.425 -24.707 8.952 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.275 6.275 3 C 0.266 3.734 4 O -0.365 6.365 5 C 0.030 3.970 6 N -0.186 5.186 7 C 0.003 3.997 8 C -0.307 4.307 9 C 0.219 3.781 10 N -0.404 5.404 11 C 0.347 3.653 12 O -0.475 6.475 13 C -0.256 4.256 14 C -0.057 4.057 15 C -0.209 4.209 16 C 0.125 3.875 17 C -0.477 4.477 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.398 5.398 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.261 4.261 26 C -0.051 4.051 27 N -0.219 5.219 28 H 0.293 0.707 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.153 0.847 33 H 0.165 0.835 34 H 0.205 0.795 35 H 0.209 0.791 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.816 -24.504 8.434 26.796 hybrid contribution -0.246 0.363 -0.509 0.672 sum -7.063 -24.141 7.924 26.372 Atomic orbital electron populations 1.23343 0.75411 1.04048 1.02971 1.86474 1.24145 1.32737 1.84127 1.24503 0.92803 0.82177 0.73957 1.90817 1.66546 1.36180 1.42975 1.21056 0.87864 0.79132 1.08938 1.45593 1.66392 1.07881 0.98777 1.22654 0.95660 0.90687 0.90705 1.22942 1.12965 0.98835 0.95913 1.19358 0.85085 0.83902 0.89799 1.69156 1.33308 1.00435 1.37490 1.19350 0.74460 0.85467 0.85975 1.90479 1.53212 1.86109 1.17728 1.18747 1.20127 0.93470 0.93295 1.20658 0.95115 0.97527 0.92412 1.21008 1.08035 0.92379 0.99465 1.17799 0.86065 0.92337 0.91275 1.19783 1.27572 1.06177 0.94150 0.89964 1.26060 0.93513 0.95739 0.99267 1.69780 1.19125 1.33106 1.17825 0.86249 0.80013 0.80554 0.79655 1.19150 1.20173 1.18372 1.20675 1.13362 0.97744 0.94269 1.20401 0.94842 0.92026 0.97843 1.44129 1.68836 1.07241 1.01655 0.70724 0.87668 0.91588 0.91632 0.84740 0.83544 0.79468 0.79063 0.87922 0.86560 0.90520 0.88672 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.16 10.56 101.05 1.07 1.23 16 2 O -0.36 -2.02 10.57 -39.26 -0.41 -2.43 16 3 C 0.43 2.93 8.03 36.01 0.29 3.22 16 4 O -0.48 -5.59 16.17 -18.75 -0.30 -5.90 16 5 C 0.15 0.56 7.03 -5.19 -0.04 0.53 16 6 N -0.39 -3.38 3.14 -62.23 -0.20 -3.57 16 7 C 0.13 1.31 11.45 -16.65 -0.19 1.12 16 8 C -0.28 -4.25 9.52 -39.61 -0.38 -4.63 16 9 C 0.48 8.30 8.07 -155.23 -1.25 7.05 16 10 N -0.65 -14.25 9.64 -12.23 -0.12 -14.37 16 11 C 0.55 13.79 7.68 -12.76 -0.10 13.69 16 12 O -0.59 -14.91 13.25 5.00 0.07 -14.84 16 13 C -0.25 -6.69 5.90 -104.66 -0.62 -7.30 16 14 C -0.04 -1.00 9.51 -39.63 -0.38 -1.38 16 15 C -0.19 -5.21 8.63 -39.27 -0.34 -5.55 16 16 C 0.13 3.58 5.57 -106.80 -0.59 2.99 16 17 C -0.45 -12.07 9.04 -37.77 -0.34 -12.41 16 18 H 0.08 2.11 7.91 -52.48 -0.42 1.69 16 19 C 0.07 1.88 5.13 -17.31 -0.09 1.79 16 20 N -0.77 -20.16 10.99 55.56 0.61 -19.55 16 21 Si 0.91 18.57 29.60 -169.99 -5.03 13.54 16 22 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.24 -6.40 9.73 -39.27 -0.38 -6.78 16 26 C -0.03 -0.84 9.52 -39.64 -0.38 -1.22 16 27 N -0.49 -5.84 7.38 31.33 0.23 -5.61 16 28 H 0.45 4.27 8.96 -182.56 -1.64 2.63 16 29 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.31 8.13 -51.93 -0.42 -0.11 16 31 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.13 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.15 -0.03 8.14 -51.93 -0.42 -0.45 16 34 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.19 3.41 5.77 -52.49 -0.30 3.11 16 36 H 0.10 2.53 7.52 -52.49 -0.39 2.14 16 37 H 0.12 3.22 6.20 -52.49 -0.33 2.89 16 38 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.10 2.44 7.63 -52.48 -0.40 2.04 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -38.76 356.51 -9.07 -47.82 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -5.57 Total: 7.19 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.72 Total: -7.65 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.53 Total: -43.10 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.65 Total: -23.17 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.76 -9.07 -47.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340124314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.448 kcal (2) G-P(sol) polarization free energy of solvation -38.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds