Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 C 1.38405 * 120.00233 * 179.97438 * 2 1 3 5 5 N 1.32502 * 119.21797 * 0.02562 * 4 2 1 6 6 C 1.32261 * 120.74337 * 179.97438 * 5 4 2 7 7 C 1.38628 * 119.19401 * 0.02562 * 6 5 4 8 8 C 1.38586 * 118.55969 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.40346 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.47095 * 94.99840 * 9 8 7 11 11 S 1.65595 * 120.00022 * 165.00044 * 10 9 8 12 12 O 1.42098 * 106.40251 * 178.54425 * 11 10 9 13 13 O 1.42101 * 106.40365 * 311.46404 * 11 10 9 14 14 N 1.65593 * 107.21993 * 65.00265 * 11 10 9 15 15 C 1.46496 * 120.00186 * 270.00252 * 14 11 10 16 16 C 1.46505 * 120.00213 * 89.99689 * 14 11 10 17 17 C 1.50702 * 109.46965 * 94.99881 * 16 14 11 18 18 H 1.08002 * 119.99785 * 0.02562 * 17 16 14 19 19 C 1.37876 * 120.00043 * 180.02562 * 17 16 14 20 20 N 1.31517 * 119.99772 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00082 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46950 * 90.00260 * 21 19 17 23 23 H 1.48493 * 109.47072 * 209.99889 * 21 19 17 24 24 H 1.48495 * 109.47007 * 330.00465 * 21 19 17 25 25 N 1.32293 * 119.19609 * 359.73344 * 8 7 6 26 26 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 28 28 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 29 29 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 30 30 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 31 31 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 32 32 H 1.07998 * 120.40404 * 179.97438 * 6 5 4 33 33 H 1.07997 * 120.72314 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47296 * 215.00337 * 9 8 7 35 35 H 1.09005 * 109.47299 * 335.00403 * 9 8 7 36 36 H 0.97003 * 120.00054 * 345.00569 * 10 9 8 37 37 H 1.09000 * 109.47459 * 89.99491 * 15 14 11 38 38 H 1.09002 * 109.47144 * 209.99711 * 15 14 11 39 39 H 1.08999 * 109.47124 * 329.99658 * 15 14 11 40 40 H 1.08994 * 109.47324 * 215.00504 * 16 14 11 41 41 H 1.09005 * 109.46623 * 335.00397 * 16 14 11 42 42 H 0.96997 * 119.99735 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1571 -1.1986 0.0005 5 7 1.4790 -2.3370 0.0005 6 6 2.1096 -3.4996 0.0005 7 6 3.4958 -3.5169 0.0011 8 6 4.1735 -2.3081 0.0011 9 6 5.6802 -2.2784 0.0022 10 7 6.1671 -2.1491 -1.3734 11 16 7.7412 -1.7207 -1.6577 12 8 7.9069 -1.7150 -3.0690 13 8 8.0030 -0.5885 -0.8399 14 7 8.6946 -2.9452 -1.0800 15 6 9.1650 -2.9151 0.3071 16 6 9.0676 -4.0588 -1.9559 17 6 10.4156 -3.7842 -2.5711 18 1 10.9420 -2.8717 -2.3331 19 6 10.9768 -4.6979 -3.4378 20 7 10.3355 -5.8088 -3.7280 21 14 12.6481 -4.3579 -4.1999 22 1 13.7130 -4.9086 -3.3235 23 1 12.7236 -5.0026 -5.5354 24 1 12.8364 -2.8922 -4.3463 25 7 3.4818 -1.1804 -0.0048 26 1 -0.3634 1.0277 0.0005 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 -0.5139 -0.8900 29 1 2.3791 1.5835 1.0277 30 1 3.1499 1.1384 -0.5139 31 1 1.6083 2.0284 -0.5138 32 1 1.5515 -4.4241 0.0009 33 1 4.0359 -4.4521 0.0007 34 1 6.0265 -1.4294 0.5916 35 1 6.0615 -3.2024 0.4372 36 1 5.5675 -2.3144 -2.1178 37 1 8.4423 -3.4215 0.9470 38 1 10.1280 -3.4212 0.3752 39 1 9.2747 -1.8802 0.6311 40 1 9.1145 -4.9790 -1.3737 41 1 8.3230 -4.1655 -2.7449 42 1 10.7302 -6.4514 -4.3380 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342989647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = -3.076372 kcal Electronic energy + Delta-G solvation = -26147.255726 eV Core-core repulsion = 22290.339728 eV Total energy + Delta-G solvation = -3856.915998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16829 -37.21062 -36.61506 -35.60797 -35.44336 -35.16162 -33.30652 -32.43182 -31.33812 -28.55226 -27.78198 -26.72794 -25.98717 -25.05713 -23.12442 -22.29772 -21.72965 -19.03497 -17.87433 -17.75921 -17.20743 -16.64498 -16.35894 -16.08812 -15.79748 -15.52066 -14.99153 -14.82533 -14.39103 -14.27463 -13.96040 -13.80366 -13.33599 -13.29544 -12.89065 -12.82589 -12.62442 -12.30094 -12.18834 -12.15798 -11.62861 -11.60480 -11.39386 -11.16387 -11.10710 -11.06586 -10.80901 -10.69918 -10.51643 -10.35590 -10.03522 -9.77111 -9.42583 -9.23658 -8.44587 -8.11989 -8.07753 -6.06564 -4.10342 0.81479 1.05379 1.31978 2.43901 3.31831 3.38370 3.43651 3.47435 3.78553 3.85574 4.15195 4.25406 4.44328 4.45618 4.82867 4.96933 5.02237 5.03807 5.12109 5.15464 5.28229 5.30941 5.39058 5.41697 5.48987 5.62018 5.63676 5.63958 5.87199 5.98531 6.10609 6.29446 6.55199 6.55695 6.72072 7.03334 7.22312 7.24340 7.40741 7.60362 7.91171 8.11377 8.20303 8.92139 9.54941 11.02083 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.002836 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.290138 B = 9869.437458 C =10296.866119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.596 5.596 3 C 0.101 3.899 4 C 0.559 3.441 5 N -0.568 5.568 6 C 0.191 3.809 7 C -0.274 4.274 8 C 0.213 3.787 9 C 0.172 3.828 10 N -1.126 6.126 11 S 2.783 3.217 12 O -0.961 6.961 13 O -0.994 6.994 14 N -0.995 5.995 15 C 0.093 3.907 16 C 0.257 3.743 17 C -0.529 4.529 18 H 0.060 0.940 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 N -0.553 5.553 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.413 0.587 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.901 6.400 10.942 22.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.313 5.313 3 C -0.042 4.042 4 C 0.204 3.796 5 N -0.291 5.291 6 C 0.023 3.977 7 C -0.300 4.300 8 C 0.063 3.937 9 C 0.045 3.955 10 N -0.885 5.885 11 S 2.791 3.209 12 O -0.944 6.944 13 O -0.977 6.977 14 N -0.838 5.838 15 C -0.054 4.054 16 C 0.135 3.865 17 C -0.568 4.568 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 N -0.276 5.276 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.186 0.814 33 H 0.167 0.833 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.062 8.150 10.580 23.275 hybrid contribution 0.900 -1.258 -0.619 1.666 sum -18.163 6.892 9.960 21.831 Atomic orbital electron populations 1.21545 0.77542 1.01909 1.02248 1.45868 1.05744 1.02049 1.77637 1.21692 0.97853 0.82857 1.01808 1.19222 0.85102 0.86320 0.88962 1.67896 1.41082 0.97983 1.22111 1.22946 0.91692 0.95202 0.87814 1.22502 0.96522 1.00234 1.10774 1.21311 0.96055 0.87720 0.88602 1.20064 0.87433 1.03546 0.84450 1.56238 1.31391 1.88959 1.11894 1.01939 0.72240 0.73414 0.73338 1.93650 1.84500 1.86633 1.29638 1.93529 1.84369 1.48815 1.71019 1.57616 1.63767 1.42240 1.20217 1.21394 1.00701 1.01849 0.81450 1.19064 0.96143 0.83368 0.87920 1.21500 1.03387 1.05263 1.26679 0.92148 1.24931 0.98039 0.94941 0.96135 1.69917 1.38389 1.09469 1.35753 0.86510 0.83748 0.78687 0.78601 1.20613 1.21075 1.19700 1.67699 1.06705 1.31778 1.21387 0.90765 0.92293 0.92257 0.92964 0.89831 0.91323 0.81385 0.83289 0.88533 0.89520 0.75430 0.94272 0.90287 0.91480 0.94624 0.94402 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.84 10.14 59.85 0.61 1.44 16 2 N -0.60 -6.28 3.37 -191.88 -0.65 -6.93 16 3 C 0.10 0.89 10.41 59.85 0.62 1.51 16 4 C 0.56 7.19 8.18 -322.81 -2.64 4.55 16 5 N -0.57 -6.78 9.59 -13.93 -0.13 -6.91 16 6 C 0.19 1.87 11.30 -17.22 -0.19 1.68 16 7 C -0.27 -2.80 9.83 -39.31 -0.39 -3.18 16 8 C 0.21 2.63 6.22 -82.27 -0.51 2.12 16 9 C 0.17 2.15 6.60 -5.19 -0.03 2.12 16 10 N -1.13 -16.87 6.05 -11.65 -0.07 -16.94 16 11 S 2.78 54.44 6.10 -107.50 -0.66 53.79 16 12 O -0.96 -22.93 17.11 -57.17 -0.98 -23.91 16 13 O -0.99 -20.47 16.21 -57.17 -0.93 -21.40 16 14 N -1.00 -19.95 3.23 -123.05 -0.40 -20.35 16 15 C 0.09 1.51 10.68 59.84 0.64 2.15 16 16 C 0.26 6.29 5.08 -5.19 -0.03 6.27 16 17 C -0.53 -14.73 9.38 -34.44 -0.32 -15.05 16 18 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 21 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 25 N -0.55 -7.53 9.05 -10.16 -0.09 -7.62 16 26 H 0.07 0.37 7.79 -51.93 -0.40 -0.04 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.89 7.33 -51.93 -0.38 0.51 16 31 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 32 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.10 1.24 7.75 -51.93 -0.40 0.83 16 35 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 36 H 0.41 5.81 8.64 -34.47 -0.30 5.51 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 39 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 40 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 41 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -36.17 371.23 -10.93 -47.11 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.00 Total: 0.78 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.34 Total: 5.24 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -0.60 Total: -83.97 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.90 Total: -45.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 54.44 SS G_CDS: -0.66 Total: 53.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.17 -10.93 -47.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342989647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.030 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds