Wall clock time and date at job start Tue Mar 31 2020 05:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38295 * 119.96106 * 2 1 4 4 C 1.38258 * 120.13234 * 180.02562 * 3 2 1 5 5 C 1.38150 * 120.06038 * 0.02562 * 4 3 2 6 6 C 1.38808 * 119.93687 * 359.97209 * 5 4 3 7 7 N 1.40217 * 120.06648 * 179.97438 * 6 5 4 8 8 C 1.35073 * 126.61495 * 4.99159 * 7 6 5 9 9 C 1.36621 * 106.79720 * 179.97438 * 8 7 6 10 10 C 1.47514 * 125.76967 * 179.97438 * 9 8 7 11 11 O 1.21603 * 119.99890 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00093 * 179.73081 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27858 * 12 10 9 14 14 C 1.50701 * 109.46923 * 179.97438 * 13 12 10 15 15 O 1.21297 * 119.99993 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99977 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99931 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00191 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99788 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00029 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99903 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47041 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47126 * 119.99929 * 21 19 17 24 24 H 1.48496 * 109.47151 * 239.99653 * 21 19 17 25 25 N 1.34412 * 108.46697 * 0.23411 * 9 8 7 26 26 N 1.28758 * 109.57570 * 359.60929 * 25 9 8 27 27 C 1.38099 * 119.96813 * 180.22834 * 2 1 3 28 28 H 1.09003 * 109.47055 * 90.00569 * 1 2 3 29 29 H 1.09009 * 109.46848 * 209.99788 * 1 2 3 30 30 H 1.08988 * 109.47817 * 330.00270 * 1 2 3 31 31 H 1.08004 * 119.93720 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.97405 * 179.97438 * 4 3 2 33 33 H 1.08000 * 120.02786 * 179.97438 * 5 4 3 34 34 H 1.08004 * 126.60332 * 0.02562 * 8 7 6 35 35 H 0.97000 * 119.99736 * 0.27132 * 12 10 9 36 36 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 37 37 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 38 38 H 0.97003 * 119.99587 * 0.02562 * 16 14 13 39 39 H 0.97000 * 119.99613 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.03583 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1977 1.1981 0.0000 4 6 3.5803 1.2023 -0.0005 5 6 4.2759 0.0087 -0.0016 6 6 3.5854 -1.1955 -0.0016 7 7 4.2886 -2.4086 -0.0032 8 6 5.6272 -2.5639 0.0894 9 6 5.8725 -3.9073 0.0486 10 6 7.2015 -4.5436 0.1188 11 8 8.1996 -3.8569 0.2231 12 7 7.3090 -5.8863 0.0732 13 6 8.6285 -6.5185 0.1491 14 6 8.4729 -8.0157 0.0779 15 8 7.3685 -8.5065 -0.0265 16 7 9.5609 -8.8095 0.1291 17 6 9.4194 -10.1716 0.0638 18 1 8.4361 -10.6085 -0.0284 19 6 10.5411 -10.9899 0.1171 20 7 11.7376 -10.4582 0.2298 21 14 10.3483 -12.8458 0.0288 22 1 8.9087 -13.1886 -0.0943 23 1 11.0839 -13.3642 -1.1525 24 1 10.8991 -13.4600 1.2635 25 7 4.6987 -4.5509 -0.0722 26 7 3.7379 -3.6943 -0.1009 27 6 2.1969 -1.1963 -0.0048 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5137 31 1 1.6560 2.1325 -0.0004 32 1 4.1170 2.1394 -0.0010 33 1 5.3559 0.0125 -0.0024 34 1 6.3620 -1.7775 0.1794 35 1 6.5128 -6.4340 -0.0097 36 1 9.2435 -6.1767 -0.6833 37 1 9.1075 -6.2476 1.0900 38 1 10.4441 -8.4170 0.2122 39 1 12.5206 -11.0295 0.2666 40 1 1.6569 -2.1317 -0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343514218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:46 Heat of formation + Delta-G solvation = 51.418865 kcal Electronic energy + Delta-G solvation = -25543.712161 eV Core-core repulsion = 21553.715303 eV Total energy + Delta-G solvation = -3989.996858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.66090 -40.00362 -39.31353 -38.03073 -35.32629 -34.45604 -33.66943 -33.00974 -31.51170 -31.33536 -30.36792 -27.80451 -27.55276 -24.92239 -24.56086 -23.54928 -22.39164 -21.24886 -20.31541 -19.60966 -18.72465 -18.03037 -17.23213 -16.52220 -16.44151 -15.93732 -15.75582 -15.34778 -15.17458 -15.11871 -14.54972 -14.40624 -14.35245 -14.04163 -13.76870 -13.74947 -13.38697 -12.92484 -12.90789 -12.50190 -12.22728 -12.17542 -11.95601 -11.72492 -11.60893 -11.47466 -11.41585 -11.11672 -10.37785 -10.30340 -10.10361 -9.77051 -9.61602 -9.43024 -8.98136 -8.78380 -8.59871 -8.06832 -6.48623 -3.90226 0.04557 0.68189 1.35766 1.58673 1.62406 3.09950 3.12949 3.19451 3.25764 3.31312 3.33534 3.77298 3.88332 3.99611 4.14587 4.18807 4.39413 4.49246 4.61320 4.62180 4.70836 4.78359 4.89223 5.02769 5.09288 5.11415 5.19816 5.30774 5.48011 5.52076 5.71386 5.80117 5.89113 5.90524 5.95506 6.03794 6.08688 6.41696 6.61119 7.49671 7.55537 7.84630 7.95196 8.32021 8.48814 9.08119 9.42260 9.90548 10.68391 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.037882 B = 0.001798 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.951649 B =15571.115751 C =16287.093820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.064 4.064 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.132 4.132 6 C 0.141 3.859 7 N -0.315 5.315 8 C 0.092 3.908 9 C -0.085 4.085 10 C 0.601 3.399 11 O -0.545 6.545 12 N -0.688 5.688 13 C 0.108 3.892 14 C 0.428 3.572 15 O -0.592 6.592 16 N -0.550 5.550 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.281 1.281 25 N -0.188 5.188 26 N -0.056 5.056 27 C -0.107 4.107 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.209 0.791 35 H 0.420 0.580 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.396 0.604 39 H 0.273 0.727 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.560 26.306 -0.080 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.065 4.065 3 C -0.136 4.136 4 C -0.110 4.110 5 C -0.153 4.153 6 C 0.050 3.950 7 N -0.093 5.093 8 C -0.062 4.062 9 C -0.223 4.223 10 C 0.384 3.616 11 O -0.423 6.423 12 N -0.341 5.341 13 C -0.019 4.019 14 C 0.213 3.787 15 O -0.478 6.478 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.207 1.207 25 N -0.062 5.062 26 N -0.035 5.035 27 C -0.126 4.126 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.225 0.775 35 H 0.259 0.741 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.230 0.770 39 H 0.083 0.917 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -17.625 25.431 -0.197 30.942 hybrid contribution 1.176 -0.318 0.061 1.220 sum -16.449 25.113 -0.136 30.021 Atomic orbital electron populations 1.20850 0.90074 1.03462 1.03006 1.19858 0.96743 0.92049 0.97850 1.21239 0.94270 0.97973 1.00156 1.21020 0.94189 0.97417 0.98324 1.20976 1.00731 0.90493 1.03051 1.17595 0.91683 0.81480 1.04279 1.47660 1.05453 1.07481 1.48753 1.23346 0.85592 0.99071 0.98142 1.21515 0.94183 0.90853 1.15712 1.16614 0.85451 0.82307 0.77195 1.90803 1.36485 1.63354 1.51660 1.45512 1.11125 1.05765 1.71697 1.21036 0.84573 0.92787 1.03507 1.19717 0.85864 0.87403 0.85690 1.90531 1.25336 1.75325 1.56615 1.41784 1.07490 1.06776 1.62433 1.19794 0.95355 0.80554 1.47571 0.87578 1.25319 0.94566 1.01018 0.96857 1.69624 0.98031 1.36628 1.49279 0.85756 0.78770 0.81771 0.77791 1.19116 1.20645 1.20652 1.74750 0.97551 1.25030 1.08851 1.82101 1.17047 0.81933 1.22442 1.20862 0.91229 0.99640 1.00915 0.90507 0.90931 0.90957 0.85043 0.84463 0.84627 0.77479 0.74057 0.89406 0.89410 0.77037 0.91692 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 10.01 36.01 0.36 -0.10 16 2 C -0.06 -0.39 5.88 -104.65 -0.62 -1.00 16 3 C -0.12 -0.58 9.70 -39.55 -0.38 -0.96 16 4 C -0.09 -0.45 10.04 -39.61 -0.40 -0.85 16 5 C -0.13 -0.87 9.47 -39.40 -0.37 -1.24 16 6 C 0.14 1.28 6.69 -83.58 -0.56 0.72 16 7 N -0.32 -3.62 3.82 -10.42 -0.04 -3.66 16 8 C 0.09 1.04 10.60 -16.71 -0.18 0.87 16 9 C -0.08 -1.25 6.99 -83.54 -0.58 -1.83 16 10 C 0.60 10.08 7.82 -12.48 -0.10 9.98 16 11 O -0.55 -9.83 16.86 5.27 0.09 -9.74 16 12 N -0.69 -12.42 5.52 -62.53 -0.35 -12.77 16 13 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 14 C 0.43 10.02 7.85 -10.99 -0.09 9.93 16 15 O -0.59 -15.70 15.24 5.54 0.08 -15.61 16 16 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 18 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 21 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 N -0.19 -2.96 12.03 32.85 0.40 -2.56 16 26 N -0.06 -0.80 13.13 60.35 0.79 -0.01 16 27 C -0.11 -0.87 9.33 -39.41 -0.37 -1.24 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.28 8.09 -51.92 -0.42 -0.14 16 30 H 0.07 0.19 8.08 -51.94 -0.42 -0.23 16 31 H 0.13 0.35 8.06 -52.48 -0.42 -0.08 16 32 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.14 0.65 6.84 -52.49 -0.36 0.29 16 34 H 0.21 1.61 7.16 -52.48 -0.38 1.24 16 35 H 0.42 7.96 7.12 -40.82 -0.29 7.67 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.14 1.20 7.74 -52.49 -0.41 0.79 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -33.39 360.45 -5.72 -39.11 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.22 Total: 12.82 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -3.55 Total: 8.34 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 1.47 Total: -56.12 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.17 Total: -25.35 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.39 -5.72 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343514218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.529 kcal (2) G-P(sol) polarization free energy of solvation -33.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds