Wall clock time and date at job start Tue Mar 31 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34438 * 119.33223 * 2 1 4 4 O 1.21823 * 119.50890 * 359.97438 * 3 2 1 5 5 C 1.46118 * 120.98260 * 179.97438 * 3 2 1 6 6 C 1.36543 * 119.46064 * 0.02562 * 5 3 2 7 7 C 1.48315 * 120.73984 * 179.97438 * 6 5 3 8 8 O 1.21487 * 120.00404 * 173.82387 * 7 6 5 9 9 N 1.34776 * 120.00034 * 353.82312 * 7 6 5 10 10 C 1.46504 * 120.00213 * 185.07684 * 9 7 6 11 11 C 1.50700 * 109.47257 * 180.02562 * 10 9 7 12 12 O 1.21294 * 120.00207 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99699 * 180.02562 * 11 10 9 14 14 C 1.37105 * 119.99681 * 180.02562 * 13 11 10 15 15 H 1.07997 * 120.00117 * 359.97438 * 14 13 11 16 16 C 1.38949 * 119.99554 * 179.97438 * 14 13 11 17 17 N 1.31412 * 120.00509 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99550 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46911 * 60.00401 * 18 16 14 20 20 H 1.48507 * 109.47164 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47765 * 300.00380 * 18 16 14 22 22 C 1.47086 * 118.51990 * 0.02562 * 6 5 3 23 23 C 1.39825 * 120.68475 * 179.97438 * 22 6 5 24 24 C 1.36580 * 119.82806 * 180.02562 * 23 22 6 25 25 C 1.38847 * 120.53121 * 359.97438 * 24 23 22 26 26 C 1.37743 * 120.63327 * 359.97438 * 25 24 23 27 27 C 1.37831 * 119.33691 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47399 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47126 * 120.00193 * 1 2 3 30 30 H 1.09008 * 109.46897 * 240.00171 * 1 2 3 31 31 H 1.08004 * 120.27169 * 180.02562 * 5 3 2 32 32 H 0.96999 * 120.00456 * 5.07365 * 9 7 6 33 33 H 1.08998 * 109.46793 * 300.00056 * 10 9 7 34 34 H 1.08998 * 109.47233 * 59.99312 * 10 9 7 35 35 H 0.97002 * 120.00465 * 359.97438 * 13 11 10 36 36 H 0.96998 * 120.00114 * 179.97438 * 17 16 14 37 37 H 1.08004 * 120.08273 * 359.97438 * 23 22 6 38 38 H 1.08007 * 119.73011 * 179.71983 * 24 23 22 39 39 H 1.08002 * 119.68288 * 180.02562 * 25 24 23 40 40 H 1.07997 * 120.08613 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1236 1.1720 0.0000 4 8 1.4933 2.2145 -0.0005 5 6 3.5842 1.2141 0.0006 6 6 4.2897 0.0451 0.0006 7 6 5.7728 0.0547 0.0006 8 8 6.3871 -0.9873 0.1137 9 7 6.4392 1.2194 -0.1250 10 6 7.8999 1.2193 -0.2369 11 6 8.3941 2.6373 -0.3649 12 8 7.6038 3.5574 -0.3633 13 7 9.7141 2.8828 -0.4822 14 6 10.1636 4.1729 -0.5981 15 1 9.4601 4.9922 -0.5958 16 6 11.5246 4.4260 -0.7184 17 7 12.3808 3.4291 -0.7206 18 14 12.1371 6.1836 -0.8770 19 1 11.7327 6.9589 0.3233 20 1 13.6178 6.1835 -0.9898 21 1 11.5478 6.8058 -2.0898 22 6 3.5461 -1.2240 -0.0006 23 6 4.2228 -2.4475 -0.0012 24 6 3.5148 -3.6155 -0.0028 25 6 2.1264 -3.5986 -0.0033 26 6 1.4390 -2.4050 -0.0017 27 6 2.1403 -1.2015 0.0005 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 -0.3633 -0.5138 0.8901 31 1 4.1015 2.1622 0.0010 32 1 5.9517 2.0578 -0.1414 33 1 8.3324 0.7632 0.6535 34 1 8.1968 0.6498 -1.1176 35 1 10.3461 2.1470 -0.4838 36 1 13.3308 3.6059 -0.8050 37 1 5.3026 -2.4690 -0.0012 38 1 4.0391 -4.5597 -0.0078 39 1 1.5802 -4.5304 -0.0041 40 1 0.3590 -2.4022 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:25 Heat of formation + Delta-G solvation = -49.248767 kcal Electronic energy + Delta-G solvation = -26661.638635 eV Core-core repulsion = 22634.983750 eV Total energy + Delta-G solvation = -4026.654885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.66086 -39.83515 -38.85824 -38.18233 -35.98449 -34.89060 -34.57098 -33.81906 -31.44754 -30.65011 -29.87627 -28.64639 -27.38415 -24.92901 -24.28912 -23.42943 -22.50700 -20.66660 -19.70686 -18.80794 -18.28275 -18.24794 -17.72691 -16.70773 -16.34398 -16.07694 -15.46959 -15.43121 -15.20368 -15.00668 -14.75085 -14.41824 -14.21754 -14.02840 -13.90453 -13.60934 -13.37263 -13.21725 -13.14613 -12.61150 -12.29817 -12.09823 -11.81110 -11.71747 -11.65838 -11.13531 -10.79545 -10.69259 -10.64968 -10.53205 -10.34903 -9.72180 -9.67240 -9.09461 -8.82891 -8.71405 -8.24680 -8.15333 -6.55833 -3.98074 -0.01042 0.90439 1.30754 2.28492 2.58143 2.91947 3.02793 3.11450 3.19959 3.24343 3.66350 3.69977 3.96772 4.06978 4.19512 4.36407 4.59133 4.66946 4.76243 4.85023 4.90640 4.94494 5.04313 5.12305 5.22034 5.31958 5.34921 5.50392 5.67370 5.73688 5.77973 5.82960 5.96658 6.00955 6.22039 6.26379 6.43399 6.58564 6.82236 7.42152 7.48677 7.59538 7.85979 8.10195 8.39284 8.99845 9.33108 9.80588 10.60769 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002452 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.178070 B =11414.239952 C =12680.318140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.522 5.522 3 C 0.534 3.466 4 O -0.524 6.524 5 C -0.158 4.158 6 C -0.032 4.032 7 C 0.556 3.444 8 O -0.529 6.529 9 N -0.693 5.693 10 C 0.107 3.893 11 C 0.425 3.575 12 O -0.596 6.596 13 N -0.546 5.546 14 C -0.306 4.306 15 H 0.106 0.894 16 C 0.027 3.973 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C -0.105 4.105 23 C -0.055 4.055 24 C -0.156 4.156 25 C -0.066 4.066 26 C -0.171 4.171 27 C 0.182 3.818 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.172 0.828 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.570 -15.257 1.294 24.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.239 5.239 3 C 0.329 3.671 4 O -0.402 6.402 5 C -0.180 4.180 6 C -0.037 4.037 7 C 0.342 3.658 8 O -0.408 6.408 9 N -0.346 5.346 10 C -0.020 4.020 11 C 0.210 3.790 12 O -0.483 6.483 13 N -0.180 5.180 14 C -0.436 4.436 15 H 0.124 0.876 16 C -0.176 4.176 17 N -0.534 5.534 18 Si 0.761 3.239 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.108 4.108 23 C -0.072 4.072 24 C -0.175 4.175 25 C -0.084 4.084 26 C -0.191 4.191 27 C 0.082 3.918 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.182 0.818 32 H 0.253 0.747 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.189 0.811 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.796 -14.642 1.333 24.659 hybrid contribution 0.523 0.769 -0.094 0.935 sum -19.274 -13.873 1.239 23.780 Atomic orbital electron populations 1.22076 0.77246 1.05918 1.02851 1.45083 1.08626 1.05041 1.65193 1.18205 0.88588 0.82749 0.77588 1.90906 1.68590 1.30883 1.49853 1.23738 0.92308 0.99489 1.02511 1.21204 0.93411 0.92980 0.96143 1.18026 0.86155 0.84050 0.77573 1.90574 1.68828 1.31268 1.50138 1.45666 1.08056 1.09181 1.71733 1.21068 0.79721 0.97604 1.03583 1.19666 0.83926 0.89319 0.86065 1.90517 1.54704 1.45343 1.57750 1.41776 1.04988 1.09513 1.61751 1.19696 0.91800 0.84269 1.47813 0.87640 1.25332 0.95667 0.99955 0.96655 1.69601 1.03359 1.31613 1.48804 0.85864 0.77389 0.81449 0.79241 1.19720 1.20822 1.19717 1.18250 0.89854 0.93120 1.09610 1.22011 1.03447 0.89915 0.91845 1.20960 0.93924 0.98812 1.03764 1.21175 0.94575 0.97340 0.95347 1.20737 0.99966 0.90332 1.08086 1.17894 0.90566 0.85713 0.97663 0.87944 0.90556 0.90572 0.81779 0.74695 0.89171 0.89274 0.76986 0.91463 0.81108 0.85261 0.85268 0.84892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 9.20 59.85 0.55 1.00 16 2 N -0.52 -5.70 3.03 -122.52 -0.37 -6.07 16 3 C 0.53 7.22 7.58 -13.25 -0.10 7.12 16 4 O -0.52 -8.40 16.30 5.08 0.08 -8.32 16 5 C -0.16 -2.06 9.70 -37.03 -0.36 -2.42 16 6 C -0.03 -0.42 6.04 -102.78 -0.62 -1.04 16 7 C 0.56 8.28 7.76 -12.11 -0.09 8.18 16 8 O -0.53 -8.55 13.57 5.38 0.07 -8.48 16 9 N -0.69 -10.92 5.48 -62.28 -0.34 -11.26 16 10 C 0.11 1.84 6.16 -5.19 -0.03 1.81 16 11 C 0.42 9.38 7.85 -10.99 -0.09 9.30 16 12 O -0.60 -14.89 15.24 5.54 0.08 -14.80 16 13 N -0.55 -13.13 5.29 -10.96 -0.06 -13.19 16 14 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 15 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 16 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 17 N -0.89 -23.42 13.05 55.50 0.72 -22.70 16 18 Si 0.93 20.31 29.55 -169.99 -5.02 15.29 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.11 -1.28 5.89 -104.83 -0.62 -1.89 16 23 C -0.05 -0.61 9.28 -39.59 -0.37 -0.98 16 24 C -0.16 -1.34 9.97 -39.96 -0.40 -1.74 16 25 C -0.07 -0.47 10.01 -39.54 -0.40 -0.87 16 26 C -0.17 -1.35 9.26 -39.37 -0.36 -1.71 16 27 C 0.18 1.93 6.53 -83.89 -0.55 1.38 16 28 H 0.10 0.87 6.80 -51.93 -0.35 0.52 16 29 H 0.08 0.41 7.90 -51.93 -0.41 0.00 16 30 H 0.08 0.41 7.91 -51.92 -0.41 0.00 16 31 H 0.16 2.04 6.46 -52.48 -0.34 1.70 16 32 H 0.41 6.53 5.56 -40.82 -0.23 6.30 16 33 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.40 9.10 7.90 -40.82 -0.32 8.77 16 36 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.17 2.15 4.99 -52.48 -0.26 1.89 16 38 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.70 6.67 -52.49 -0.35 0.35 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -32.14 345.30 -7.18 -39.31 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -3.88 Total: 14.60 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -3.67 Total: 10.42 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.05 Total: -53.22 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: 0.24 Total: -31.60 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.14 -7.18 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.935 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds