Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38512 * 119.84861 * 2 1 4 4 C 1.38101 * 120.38145 * 179.76751 * 3 2 1 5 5 C 1.38713 * 120.07779 * 0.51100 * 4 3 2 6 6 N 1.39796 * 120.14984 * 179.77024 * 5 4 3 7 7 C 1.36369 * 127.11741 * 237.67683 * 6 5 4 8 8 N 1.30504 * 107.19328 * 179.97438 * 7 6 5 9 9 N 1.28533 * 109.92529 * 0.02562 * 8 7 6 10 10 C 1.30503 * 109.92208 * 0.02562 * 9 8 7 11 11 C 1.40178 * 119.69929 * 359.48971 * 5 4 3 12 12 C 1.47606 * 120.18686 * 180.27550 * 11 5 4 13 13 O 1.21578 * 120.00442 * 6.36783 * 12 11 5 14 14 N 1.34781 * 119.99606 * 186.36221 * 12 11 5 15 15 C 1.46498 * 120.00032 * 180.02562 * 14 12 11 16 16 C 1.50691 * 109.47400 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99985 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00549 * 180.02562 * 16 15 14 19 19 C 1.37093 * 120.00313 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00383 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47291 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47153 * 120.00264 * 23 21 19 26 26 H 1.48503 * 109.46958 * 239.99868 * 23 21 19 27 27 C 1.37854 * 119.84664 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46910 * 269.97970 * 1 2 3 29 29 H 1.09004 * 109.47017 * 29.97732 * 1 2 3 30 30 H 1.09000 * 109.47377 * 149.98082 * 1 2 3 31 31 H 1.07990 * 119.80811 * 0.04157 * 3 2 1 32 32 H 1.07998 * 119.95898 * 180.25526 * 4 3 2 33 33 H 1.08004 * 126.40388 * 0.22095 * 7 6 5 34 34 H 1.08005 * 126.39620 * 180.02562 * 10 9 8 35 35 H 0.97001 * 119.99940 * 0.02562 * 14 12 11 36 36 H 1.09004 * 109.46993 * 300.00040 * 15 14 12 37 37 H 1.08999 * 109.47055 * 59.99753 * 15 14 12 38 38 H 0.97004 * 119.99473 * 359.97438 * 18 16 15 39 39 H 0.96999 * 120.00469 * 179.97438 * 22 21 19 40 40 H 1.08000 * 120.04150 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2014 0.0000 4 6 3.5773 1.2142 0.0048 5 6 4.2837 0.0204 -0.0010 6 7 5.6816 0.0317 -0.0009 7 6 6.5092 -0.5386 -0.9226 8 7 7.7341 -0.2923 -0.5459 9 7 7.7286 0.3895 0.5436 10 6 6.4998 0.6145 0.9212 11 6 3.5894 -1.1973 -0.0009 12 6 4.3302 -2.4740 -0.0009 13 8 5.5404 -2.4747 0.1158 14 7 3.6650 -3.6391 -0.1302 15 6 4.4001 -4.9063 -0.1297 16 6 3.4310 -6.0493 -0.2878 17 8 2.2429 -5.8274 -0.3904 18 7 3.8841 -7.3184 -0.3143 19 6 3.0023 -8.3583 -0.4576 20 1 1.9445 -8.1607 -0.5489 21 6 3.4696 -9.6666 -0.4854 22 7 4.7566 -9.9071 -0.3738 23 14 2.2680 -11.0835 -0.6799 24 1 0.8860 -10.5501 -0.7827 25 1 2.5975 -11.8465 -1.9106 26 1 2.3654 -11.9806 0.4995 27 6 2.1931 -1.1957 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6508 2.1333 0.0007 32 1 4.1079 2.1549 0.0090 33 1 6.2072 -1.0877 -1.8023 34 1 6.1891 1.1615 1.7992 35 1 2.6995 -3.6385 -0.2236 36 1 5.1098 -4.9150 -0.9570 37 1 4.9386 -5.0136 0.8119 38 1 4.8342 -7.4959 -0.2319 39 1 5.0829 -10.8204 -0.3928 40 1 1.6512 -2.1299 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343522402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = 46.679830 kcal Electronic energy + Delta-G solvation = -26941.819356 eV Core-core repulsion = 22951.616997 eV Total energy + Delta-G solvation = -3990.202358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.10336 -40.55582 -39.06404 -38.12040 -35.56449 -34.57120 -33.86219 -32.03966 -31.84641 -31.43165 -30.47598 -27.86362 -27.17068 -24.99132 -24.06246 -23.40695 -22.08283 -21.58320 -20.38556 -19.74958 -18.87004 -18.15845 -17.55448 -16.65665 -15.90287 -15.77153 -15.48357 -15.43077 -15.19473 -14.94640 -14.58188 -14.54295 -14.47740 -14.30224 -14.01997 -13.84013 -13.41490 -12.81019 -12.56587 -12.49991 -12.31336 -12.05697 -11.94586 -11.70689 -11.44241 -11.20372 -10.81972 -10.47825 -10.47026 -10.39028 -10.02689 -9.72831 -9.62312 -9.25648 -9.01274 -8.94478 -8.75072 -8.18772 -6.58869 -4.01457 0.19821 0.59271 1.89049 2.38736 2.54998 2.98680 3.04598 3.05629 3.18217 3.24517 3.29259 3.63730 4.03572 4.17369 4.27031 4.29646 4.47067 4.59502 4.64929 4.72679 4.80801 5.00759 5.09352 5.11816 5.20523 5.32615 5.36553 5.44106 5.54958 5.61443 5.74970 5.81596 5.85073 5.94257 5.95663 6.16595 6.18350 6.40829 6.97614 7.38922 7.49412 7.82859 8.11197 8.35574 8.78270 8.96333 9.30005 9.76860 10.57773 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.002867 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.476180 B = 9763.093258 C =11555.882809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.078 4.078 3 C -0.083 4.083 4 C -0.112 4.112 5 C 0.159 3.841 6 N -0.434 5.434 7 C 0.222 3.778 8 N -0.306 5.306 9 N -0.294 5.294 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.546 3.454 13 O -0.530 6.530 14 N -0.694 5.694 15 C 0.109 3.891 16 C 0.425 3.575 17 O -0.600 6.600 18 N -0.545 5.545 19 C -0.307 4.307 20 H 0.107 0.893 21 C 0.027 3.973 22 N -0.892 5.892 23 Si 0.933 3.067 24 H -0.267 1.267 25 H -0.279 1.279 26 H -0.280 1.280 27 C -0.071 4.071 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.208 0.792 34 H 0.214 0.786 35 H 0.411 0.589 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 22.110 0.746 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.078 4.078 3 C -0.102 4.102 4 C -0.132 4.132 5 C 0.066 3.934 6 N -0.123 5.123 7 C -0.064 4.064 8 N -0.143 5.143 9 N -0.131 5.131 10 C -0.132 4.132 11 C -0.120 4.120 12 C 0.332 3.668 13 O -0.408 6.408 14 N -0.348 5.348 15 C -0.018 4.018 16 C 0.211 3.789 17 O -0.487 6.487 18 N -0.179 5.179 19 C -0.436 4.436 20 H 0.124 0.876 21 C -0.177 4.177 22 N -0.531 5.531 23 Si 0.760 3.240 24 H -0.191 1.191 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.091 4.091 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.225 0.775 34 H 0.231 0.769 35 H 0.250 0.750 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.168 21.992 0.754 22.604 hybrid contribution -1.857 -1.132 0.034 2.175 sum -7.024 20.860 0.787 22.025 Atomic orbital electron populations 1.20888 0.89861 1.03724 1.03168 1.20048 0.97106 0.92460 0.98222 1.21140 0.93031 0.98325 0.97712 1.21084 0.94521 0.96504 1.01054 1.17433 0.80371 0.93056 1.02581 1.43851 1.05005 1.42522 1.20927 1.26369 0.85957 0.97825 0.96237 1.74161 1.17693 1.14502 1.07937 1.74100 1.17513 1.13979 1.07538 1.26591 0.86772 1.02415 0.97401 1.20000 0.94026 0.92577 1.05405 1.18040 0.87249 0.83488 0.78016 1.90847 1.13126 1.87074 1.49741 1.45616 1.12250 1.04822 1.72082 1.21016 0.94524 0.82764 1.03537 1.19651 0.88996 0.84140 0.86117 1.90488 1.16629 1.83943 1.57641 1.41801 1.10566 1.04121 1.61443 1.19780 0.92014 0.84183 1.47657 0.87554 1.25353 0.96691 0.98970 0.96642 1.69619 1.12745 1.22130 1.48642 0.85747 0.80154 0.80172 0.77958 1.19100 1.20529 1.20548 1.21333 0.91880 0.99205 0.96640 0.90369 0.90946 0.90577 0.84350 0.84329 0.77533 0.76950 0.74999 0.89438 0.89558 0.76971 0.91501 0.83919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.00 36.01 0.36 -0.22 16 2 C -0.08 -0.53 5.87 -104.66 -0.61 -1.15 16 3 C -0.08 -0.48 9.68 -39.53 -0.38 -0.87 16 4 C -0.11 -0.81 9.82 -39.46 -0.39 -1.19 16 5 C 0.16 1.65 5.95 -83.32 -0.50 1.16 16 6 N -0.43 -5.40 2.10 -62.96 -0.13 -5.53 16 7 C 0.22 3.20 9.42 -89.15 -0.84 2.36 16 8 N -0.31 -5.20 12.19 29.86 0.36 -4.84 16 9 N -0.29 -4.74 12.19 29.86 0.36 -4.38 16 10 C 0.15 1.92 12.61 -89.15 -1.12 0.80 16 11 C -0.12 -1.31 5.88 -104.83 -0.62 -1.93 16 12 C 0.55 8.01 7.61 -12.44 -0.09 7.92 16 13 O -0.53 -9.25 12.65 5.30 0.07 -9.19 16 14 N -0.69 -10.63 5.48 -62.51 -0.34 -10.97 16 15 C 0.11 1.90 6.15 -5.20 -0.03 1.87 16 16 C 0.43 9.32 7.85 -10.99 -0.09 9.23 16 17 O -0.60 -14.53 15.24 5.54 0.08 -14.45 16 18 N -0.55 -13.12 5.29 -10.97 -0.06 -13.18 16 19 C -0.31 -8.12 9.68 -14.93 -0.14 -8.27 16 20 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 22 N -0.89 -23.44 13.05 55.50 0.72 -22.71 16 23 Si 0.93 20.07 29.55 -169.99 -5.02 15.05 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.07 -0.65 9.16 -39.20 -0.36 -1.01 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 30 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.21 2.58 7.99 -52.48 -0.42 2.16 16 34 H 0.21 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.41 6.03 5.51 -40.82 -0.22 5.80 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.40 9.25 7.90 -40.82 -0.32 8.93 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 40 H 0.14 1.24 6.46 -52.49 -0.34 0.90 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -34.00 352.35 -7.75 -41.75 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -4.19 Total: 13.84 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -4.91 Total: 9.30 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.92 Total: -61.61 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.15 Total: -23.64 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.00 -7.75 -41.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343522402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.429 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds