Wall clock time and date at job start Tue Mar 31 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30679 * 125.85514 * 2 1 4 4 C 1.33973 * 109.77524 * 179.97438 * 3 2 1 5 5 C 1.48431 * 125.64458 * 179.97438 * 4 3 2 6 6 C 1.39451 * 120.04934 * 359.97438 * 5 4 3 7 7 C 1.38113 * 120.16886 * 180.02562 * 6 5 4 8 8 C 1.38062 * 120.27722 * 0.02562 * 7 6 5 9 9 C 1.39622 * 120.09198 * 359.97438 * 8 7 6 10 10 C 1.47862 * 120.08326 * 179.97438 * 9 8 7 11 11 O 1.21552 * 119.99676 * 179.97438 * 10 9 8 12 12 N 1.34776 * 120.00394 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00006 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47106 * 179.97438 * 13 12 10 15 15 O 1.21295 * 119.99584 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00020 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99737 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00254 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99943 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00243 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47026 * 90.00208 * 21 19 17 23 23 H 1.48496 * 109.47474 * 210.00244 * 21 19 17 24 24 H 1.48504 * 109.47117 * 330.00775 * 21 19 17 25 25 C 1.39052 * 120.04670 * 180.25201 * 5 4 3 26 26 N 1.31488 * 108.70314 * 0.22514 * 4 3 2 27 27 N 1.34515 * 125.84692 * 179.97438 * 2 1 3 28 28 H 0.96999 * 126.75142 * 0.05767 * 27 2 1 29 29 H 1.08996 * 109.47316 * 90.02547 * 1 2 3 30 30 H 1.08999 * 109.47347 * 210.03171 * 1 2 3 31 31 H 1.09003 * 109.47088 * 330.03353 * 1 2 3 32 32 H 1.07997 * 119.91634 * 0.02562 * 6 5 4 33 33 H 1.08005 * 119.86583 * 180.02562 * 7 6 5 34 34 H 1.07993 * 119.95850 * 179.97438 * 8 7 6 35 35 H 0.96998 * 119.99803 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.47001 * 59.99676 * 13 12 10 37 37 H 1.09000 * 109.47574 * 299.99892 * 13 12 10 38 38 H 0.96994 * 119.99756 * 0.02562 * 16 14 13 39 39 H 0.96999 * 120.00288 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.13846 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2725 1.0592 0.0000 4 6 3.5598 0.6881 0.0006 5 6 4.7250 1.6075 0.0002 6 6 4.5255 2.9877 -0.0013 7 6 5.6079 3.8455 -0.0022 8 6 6.8940 3.3433 -0.0021 9 6 7.1068 1.9634 -0.0005 10 6 8.4842 1.4258 -0.0010 11 8 8.6676 0.2242 0.0008 12 7 9.5364 2.2681 -0.0024 13 6 10.9010 1.7354 -0.0022 14 6 11.8857 2.8763 -0.0046 15 8 11.4866 4.0218 -0.0057 16 7 13.2096 2.6239 -0.0044 17 6 14.1052 3.6619 -0.0060 18 1 13.7499 4.6818 -0.0070 19 6 15.4701 3.4017 -0.0052 20 7 15.9025 2.1608 -0.0034 21 14 16.6906 4.8159 -0.0081 22 1 17.0138 5.1936 1.3912 23 1 17.9320 4.3971 -0.7070 24 1 16.0961 5.9814 -0.7106 25 6 6.0172 1.0939 -0.0044 26 7 3.6200 -0.6254 -0.0040 27 7 2.2948 -1.0904 0.0005 28 1 2.0047 -2.0160 0.0001 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8903 0.5133 32 1 3.5220 3.3868 -0.0019 33 1 5.4478 4.9136 -0.0030 34 1 7.7367 4.0187 -0.0032 35 1 9.3900 3.2270 -0.0034 36 1 11.0523 1.1235 -0.8916 37 1 11.0531 1.1257 0.8884 38 1 13.5286 1.7080 -0.0031 39 1 16.8553 1.9791 -0.0033 40 1 6.1761 0.0256 -0.0082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343534848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:56 Heat of formation + Delta-G solvation = 34.948687 kcal Electronic energy + Delta-G solvation = -25550.666238 eV Core-core repulsion = 21559.955179 eV Total energy + Delta-G solvation = -3990.711059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.46730 -40.13105 -38.64318 -37.85725 -34.53943 -33.97481 -33.61077 -32.83911 -31.47585 -31.26483 -30.97067 -28.34135 -27.71152 -24.78489 -24.20737 -23.32740 -21.41877 -21.29949 -19.95370 -19.61654 -18.48167 -18.06426 -17.56322 -16.36017 -16.14875 -15.82307 -15.54151 -15.27672 -15.20249 -14.77850 -14.44705 -14.15067 -13.95654 -13.93500 -13.79899 -13.59180 -13.43111 -13.20205 -12.76590 -12.26350 -12.22292 -11.92327 -11.90387 -11.63405 -11.43950 -11.12395 -10.79937 -10.45767 -10.44294 -10.31916 -10.11398 -9.83871 -9.63756 -9.16234 -8.85559 -8.73173 -8.64100 -8.10320 -6.51406 -3.93508 0.52304 0.92226 1.39717 2.20183 2.49194 3.08792 3.12342 3.20240 3.23581 3.29440 3.51102 3.73031 3.85725 4.08322 4.11356 4.32569 4.69936 4.70848 4.83261 4.84553 4.93202 4.98396 5.09031 5.17164 5.21421 5.33822 5.47871 5.73602 5.82851 5.89932 5.90796 5.96035 6.06338 6.17522 6.21192 6.26951 6.59260 6.63393 6.67701 7.46094 7.66595 7.77467 7.91745 8.39163 8.45560 9.04387 9.38989 9.86656 10.65388 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.039700 B = 0.001823 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.119927 B =15356.660444 C =16041.333194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.284 3.716 3 N -0.532 5.532 4 C 0.275 3.725 5 C -0.031 4.031 6 C -0.053 4.053 7 C -0.130 4.130 8 C -0.066 4.066 9 C -0.132 4.132 10 C 0.556 3.444 11 O -0.543 6.543 12 N -0.701 5.701 13 C 0.108 3.892 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.306 4.306 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.269 1.269 25 C -0.025 4.025 26 N -0.299 5.299 27 N -0.482 5.482 28 H 0.442 0.558 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.367 -4.150 -0.010 29.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.261 5.261 4 C -0.004 4.004 5 C -0.034 4.034 6 C -0.073 4.073 7 C -0.148 4.148 8 C -0.086 4.086 9 C -0.135 4.135 10 C 0.342 3.658 11 O -0.422 6.422 12 N -0.355 5.355 13 C -0.019 4.019 14 C 0.214 3.786 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.046 4.046 26 N -0.128 5.128 27 N -0.201 5.201 28 H 0.288 0.712 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.250 0.750 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -28.693 -4.372 -0.019 29.024 hybrid contribution 0.514 -0.232 0.005 0.564 sum -28.179 -4.605 -0.014 28.552 Atomic orbital electron populations 1.20420 0.83397 1.05167 1.04714 1.24399 0.96690 0.82702 0.95634 1.70439 1.00857 1.29360 1.25436 1.22214 0.91317 0.88985 0.97930 1.17304 0.88446 0.91307 1.06341 1.21373 1.00110 0.91445 0.94383 1.21075 0.91674 1.00386 1.01651 1.21636 0.98166 0.94209 0.94553 1.19841 0.93284 0.93796 1.06569 1.18128 0.84437 0.86245 0.76944 1.90768 1.86170 1.14756 1.50489 1.45609 1.04998 1.11202 1.73719 1.20990 0.81292 0.96144 1.03482 1.19721 0.83724 0.89533 0.85669 1.90490 1.78375 1.22138 1.57469 1.41788 1.03815 1.10148 1.62507 1.19737 0.86101 0.89369 1.48296 0.87630 1.25330 0.97952 0.97661 0.96755 1.69615 1.16095 1.18465 1.49233 0.85805 0.79187 0.80499 0.78485 1.20268 1.20808 1.19311 1.21262 0.89663 1.01028 0.92616 1.78329 0.96220 1.11745 1.26507 1.47997 1.04167 1.10167 1.57746 0.71245 0.88840 0.89742 0.88192 0.84314 0.84509 0.84563 0.75016 0.89613 0.89603 0.77003 0.91579 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.28 2.19 8.22 -155.74 -1.28 0.91 16 3 N -0.53 -5.91 10.81 -8.55 -0.09 -6.00 16 4 C 0.28 3.50 7.77 -156.63 -1.22 2.29 16 5 C -0.03 -0.39 5.87 -104.94 -0.62 -1.01 16 6 C -0.05 -0.55 9.68 -39.18 -0.38 -0.93 16 7 C -0.13 -1.27 10.02 -39.69 -0.40 -1.66 16 8 C -0.07 -0.77 9.54 -39.13 -0.37 -1.14 16 9 C -0.13 -1.86 5.87 -105.01 -0.62 -2.48 16 10 C 0.56 9.43 7.77 -12.32 -0.10 9.33 16 11 O -0.54 -10.74 16.34 5.32 0.09 -10.65 16 12 N -0.70 -12.01 5.48 -62.42 -0.34 -12.35 16 13 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 14 C 0.43 9.80 7.85 -10.98 -0.09 9.71 16 15 O -0.60 -15.15 15.24 5.54 0.08 -15.06 16 16 N -0.55 -13.58 5.29 -10.96 -0.06 -13.64 16 17 C -0.31 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.11 2.97 7.16 -52.48 -0.38 2.60 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.86 13.05 55.50 0.72 -23.13 16 21 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 25 C -0.02 -0.34 9.22 -38.85 -0.36 -0.70 16 26 N -0.30 -3.73 12.42 32.11 0.40 -3.33 16 27 N -0.48 -3.87 7.44 32.61 0.24 -3.62 16 28 H 0.44 1.80 8.96 -182.34 -1.63 0.17 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 30 H 0.08 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.14 1.26 7.82 -52.49 -0.41 0.85 16 33 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.14 1.45 6.39 -52.49 -0.34 1.12 16 35 H 0.41 6.73 5.46 -40.82 -0.22 6.50 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 38 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.14 2.16 7.42 -52.48 -0.39 1.77 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -35.22 358.80 -9.25 -44.47 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.36 Total: 13.78 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -5.31 Total: 8.64 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.87 Total: -62.08 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.17 Total: -25.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.22 -9.25 -44.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343534848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.422 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds