Wall clock time and date at job start Tue Mar 31 2020 04:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35491 * 118.72424 * 2 1 4 4 C 1.36240 * 122.19846 * 179.97438 * 3 2 1 5 5 C 1.47085 * 120.45309 * 180.02562 * 4 3 2 6 6 O 1.21659 * 120.00227 * 173.92234 * 5 4 3 7 7 N 1.34778 * 120.00052 * 353.92608 * 5 4 3 8 8 C 1.46502 * 120.00047 * 185.08054 * 7 5 4 9 9 C 1.50696 * 109.47075 * 179.97438 * 8 7 5 10 10 O 1.21297 * 119.99960 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00079 * 179.97438 * 9 8 7 12 12 C 1.37100 * 120.00201 * 179.97438 * 11 9 8 13 13 H 1.08002 * 119.99987 * 0.02562 * 12 11 9 14 14 C 1.38946 * 119.99963 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00368 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99931 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46967 * 90.00487 * 16 14 12 18 18 H 1.48501 * 109.47246 * 210.00516 * 16 14 12 19 19 H 1.48505 * 109.47127 * 330.00497 * 16 14 12 20 20 C 1.47350 * 119.09529 * 0.02562 * 4 3 2 21 21 C 1.39209 * 121.96446 * 179.97438 * 20 4 3 22 22 C 1.37826 * 119.54664 * 180.02562 * 21 20 4 23 23 C 1.38845 * 120.68409 * 0.02562 * 22 21 20 24 24 C 1.37759 * 120.69886 * 0.02562 * 23 22 21 25 25 C 1.39439 * 119.53076 * 359.97438 * 24 23 22 26 26 C 1.34670 * 118.71801 * 179.73295 * 2 1 3 27 27 O 1.21721 * 120.21341 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.47152 * 89.99554 * 1 2 3 29 29 H 1.08998 * 109.47197 * 330.00030 * 1 2 3 30 30 H 1.09000 * 109.47388 * 209.99928 * 1 2 3 31 31 H 1.08001 * 118.89839 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99887 * 5.07790 * 7 5 4 33 33 H 1.09002 * 109.47035 * 300.00173 * 8 7 5 34 34 H 1.09002 * 109.47051 * 59.99558 * 8 7 5 35 35 H 0.97001 * 119.99947 * 0.02562 * 11 9 8 36 36 H 0.96999 * 120.00653 * 179.97438 * 15 14 12 37 37 H 1.08004 * 120.22473 * 0.04432 * 21 20 4 38 38 H 1.08002 * 119.65819 * 179.97438 * 22 21 20 39 39 H 1.08004 * 119.65210 * 180.02562 * 23 22 21 40 40 H 1.08004 * 120.23112 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1162 1.1882 0.0000 4 6 3.4761 1.2707 0.0005 5 6 4.1433 2.5815 0.0011 6 8 5.3529 2.6484 0.1131 7 7 3.4148 3.7087 -0.1224 8 6 4.0858 5.0062 -0.2339 9 6 3.0533 6.0965 -0.3607 10 8 1.8729 5.8172 -0.3577 11 7 3.4414 7.3819 -0.4763 12 6 2.5021 8.3739 -0.5922 13 1 1.4511 8.1252 -0.5904 14 6 2.9022 9.6991 -0.7108 15 7 4.1810 10.0018 -0.7125 16 14 1.6223 11.0507 -0.8680 17 1 1.2535 11.5427 0.4837 18 1 2.1808 12.1709 -1.6671 19 1 0.4152 10.5130 -1.5456 20 6 4.2693 0.0290 0.0005 21 6 5.6613 0.0437 0.0005 22 6 6.3536 -1.1481 0.0000 23 6 5.6770 -2.3605 -0.0011 24 6 4.2999 -2.3974 -0.0021 25 6 3.5803 -1.2030 -0.0016 26 6 2.1121 -1.1810 0.0055 27 8 1.4839 -2.2236 0.0108 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8900 0.5138 31 1 1.5378 2.1003 0.0004 32 1 2.4461 3.6608 -0.1376 33 1 4.6909 5.1799 0.6560 34 1 4.7270 5.0091 -1.1154 35 1 4.3854 7.6053 -0.4783 36 1 4.4604 10.9270 -0.7957 37 1 6.1951 0.9826 0.0012 38 1 7.4336 -1.1388 -0.0005 39 1 6.2362 -3.2845 -0.0011 40 1 3.7813 -3.3448 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343536863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:09 Heat of formation + Delta-G solvation = -56.222901 kcal Electronic energy + Delta-G solvation = -26694.733442 eV Core-core repulsion = 22667.776136 eV Total energy + Delta-G solvation = -4026.957306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62926 -39.69978 -38.61908 -38.10824 -37.11928 -34.60859 -33.84450 -33.23968 -31.47584 -31.40165 -30.01094 -28.04535 -27.31091 -24.95674 -24.32069 -23.48679 -22.37830 -20.68286 -19.69375 -18.54157 -18.45422 -18.22095 -17.72156 -16.53227 -16.40403 -15.97652 -15.47851 -15.32579 -15.23704 -14.96712 -14.70846 -14.40778 -14.06964 -13.93602 -13.87945 -13.69205 -13.33748 -13.06118 -12.79160 -12.73785 -12.28041 -12.08163 -11.89383 -11.69365 -11.64033 -11.57154 -11.17671 -10.51152 -10.41486 -10.37652 -9.74050 -9.70265 -9.67678 -9.20049 -8.97321 -8.72432 -8.17296 -8.00122 -6.57778 -4.00135 0.46232 0.58752 1.56085 2.23752 2.54680 3.06729 3.11386 3.18002 3.20285 3.25159 3.66231 3.84631 4.01320 4.05102 4.12823 4.62323 4.64930 4.74225 4.81056 4.83581 4.95530 5.01136 5.10880 5.15239 5.18808 5.29669 5.41608 5.55163 5.82173 5.86702 5.87943 5.95831 6.01630 6.09897 6.29970 6.34404 6.54920 6.67709 6.78548 7.39872 7.49978 7.63727 7.84897 8.28767 8.37887 8.97819 9.31952 9.79059 10.58906 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.002493 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.398942 B =11229.267410 C =12543.068178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.517 5.517 3 C 0.166 3.834 4 C -0.210 4.210 5 C 0.577 3.423 6 O -0.540 6.540 7 N -0.705 5.705 8 C 0.110 3.890 9 C 0.426 3.574 10 O -0.601 6.601 11 N -0.546 5.546 12 C -0.306 4.306 13 H 0.106 0.894 14 C 0.027 3.973 15 N -0.893 5.893 16 Si 0.933 3.067 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.269 1.269 20 C 0.028 3.972 21 C -0.119 4.119 22 C -0.087 4.087 23 C -0.138 4.138 24 C -0.055 4.055 25 C -0.157 4.157 26 C 0.548 3.452 27 O -0.520 6.520 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.406 0.594 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.169 0.831 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -19.559 1.357 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.230 5.230 3 C 0.041 3.959 4 C -0.220 4.220 5 C 0.365 3.635 6 O -0.420 6.420 7 N -0.359 5.359 8 C -0.018 4.018 9 C 0.212 3.788 10 O -0.488 6.488 11 N -0.181 5.181 12 C -0.436 4.436 13 H 0.124 0.876 14 C -0.176 4.176 15 N -0.533 5.533 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.026 3.974 21 C -0.137 4.137 22 C -0.105 4.105 23 C -0.157 4.157 24 C -0.074 4.074 25 C -0.160 4.160 26 C 0.344 3.656 27 O -0.398 6.398 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.185 0.815 32 H 0.245 0.755 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.186 0.814 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.059 -20.114 1.395 20.163 hybrid contribution -0.517 1.025 -0.104 1.152 sum -0.576 -19.090 1.291 19.142 Atomic orbital electron populations 1.22256 0.76466 1.05368 1.04298 1.44796 1.09454 1.05701 1.63018 1.21865 0.93254 0.89303 0.91477 1.19912 0.91395 0.93611 1.17068 1.17422 0.86675 0.82833 0.76614 1.90618 1.13681 1.86608 1.51089 1.45601 1.11180 1.05467 1.73649 1.20987 0.95054 0.82318 1.03393 1.19709 0.89251 0.84008 0.85819 1.90481 1.17970 1.82310 1.58025 1.41796 1.10149 1.04431 1.61707 1.19723 0.90814 0.85243 1.47786 0.87641 1.25334 0.96994 0.98622 0.96695 1.69605 1.14426 1.20441 1.48824 0.85814 0.80082 0.79683 0.78464 1.20226 1.20758 1.19302 1.18624 0.93736 0.89740 0.95281 1.22101 0.92904 1.00701 0.97993 1.21470 1.00491 0.92185 0.96390 1.21186 0.93864 0.98432 1.02176 1.20953 0.93853 0.96822 0.95745 1.19676 0.91433 0.94410 1.10473 1.18286 0.88216 0.82556 0.76576 1.90840 1.68751 1.30716 1.49481 0.90354 0.89083 0.88736 0.81472 0.75476 0.89439 0.89558 0.76973 0.91501 0.81357 0.85312 0.85397 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.28 59.85 0.62 1.03 16 2 N -0.52 -5.42 2.98 -124.89 -0.37 -5.79 16 3 C 0.17 1.73 9.71 -16.65 -0.16 1.57 16 4 C -0.21 -2.69 5.99 -103.32 -0.62 -3.30 16 5 C 0.58 8.49 7.72 -12.67 -0.10 8.39 16 6 O -0.54 -9.08 13.64 5.23 0.07 -9.01 16 7 N -0.70 -10.52 5.47 -62.67 -0.34 -10.87 16 8 C 0.11 1.85 6.16 -5.19 -0.03 1.81 16 9 C 0.43 9.12 7.85 -10.99 -0.09 9.03 16 10 O -0.60 -14.26 15.24 5.54 0.08 -14.18 16 11 N -0.55 -12.89 5.29 -10.96 -0.06 -12.94 16 12 C -0.31 -8.00 9.68 -14.93 -0.14 -8.14 16 13 H 0.11 2.86 7.16 -52.49 -0.38 2.49 16 14 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 15 N -0.89 -23.14 13.05 55.50 0.72 -22.42 16 16 Si 0.93 19.89 29.55 -169.99 -5.02 14.87 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 C 0.03 0.37 5.90 -104.72 -0.62 -0.25 16 21 C -0.12 -1.50 9.33 -39.37 -0.37 -1.87 16 22 C -0.09 -0.88 10.01 -39.51 -0.40 -1.27 16 23 C -0.14 -1.30 10.01 -39.53 -0.40 -1.70 16 24 C -0.05 -0.60 9.65 -39.31 -0.38 -0.98 16 25 C -0.16 -1.99 5.89 -104.86 -0.62 -2.61 16 26 C 0.55 7.05 7.61 -12.83 -0.10 6.95 16 27 O -0.52 -7.61 15.99 5.17 0.08 -7.53 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.46 7.95 -51.93 -0.41 0.04 16 30 H 0.09 0.73 7.32 -51.93 -0.38 0.35 16 31 H 0.17 1.35 6.19 -52.49 -0.32 1.03 16 32 H 0.41 5.70 5.45 -40.82 -0.22 5.48 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.40 8.99 7.90 -40.82 -0.32 8.67 16 36 H 0.28 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.17 2.32 5.13 -52.48 -0.27 2.05 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 40 H 0.13 1.35 7.78 -52.48 -0.41 0.94 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -32.14 347.56 -7.05 -39.20 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -3.96 Total: 14.18 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -3.49 Total: 9.25 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.05 Total: -52.02 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: 0.24 Total: -30.72 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.14 -7.05 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343536863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.026 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds