Wall clock time and date at job start Tue Mar 31 2020 04:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37811 * 118.95336 * 2 1 4 4 C 1.47462 * 118.96867 * 0.02562 * 3 2 1 5 5 O 1.21592 * 120.00553 * 354.51866 * 4 3 2 6 6 N 1.34782 * 119.99587 * 174.51229 * 4 3 2 7 7 C 1.46498 * 119.99755 * 179.72679 * 6 4 3 8 8 C 1.50703 * 109.47353 * 180.27630 * 7 6 4 9 9 O 1.21296 * 119.99616 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00276 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99914 * 179.97438 * 10 8 7 12 12 H 1.08004 * 120.00167 * 0.02562 * 11 10 8 13 13 C 1.38953 * 119.99827 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00213 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99960 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47144 * 89.99873 * 15 13 11 17 17 H 1.48493 * 109.47326 * 210.00220 * 15 13 11 18 18 H 1.48500 * 109.46978 * 330.00306 * 15 13 11 19 19 C 1.35612 * 122.05653 * 180.29774 * 3 2 1 20 20 C 1.46281 * 119.40513 * 359.47243 * 19 3 2 21 21 C 1.39607 * 121.79035 * 180.19287 * 20 19 3 22 22 C 1.37790 * 119.54894 * 180.25915 * 21 20 19 23 23 C 1.38827 * 120.69443 * 0.04038 * 22 21 20 24 24 C 1.37896 * 120.73213 * 0.02562 * 23 22 21 25 25 C 1.39290 * 119.60169 * 359.97438 * 24 23 22 26 26 C 1.34743 * 118.95695 * 180.02562 * 2 1 3 27 27 O 1.21745 * 120.27737 * 359.95439 * 26 2 1 28 28 H 1.09000 * 109.46961 * 64.74028 * 1 2 3 29 29 H 1.08998 * 109.46880 * 184.73863 * 1 2 3 30 30 H 1.08997 * 109.47161 * 304.73701 * 1 2 3 31 31 H 0.97000 * 119.99967 * 0.02562 * 6 4 3 32 32 H 1.09005 * 109.47407 * 300.27490 * 7 6 4 33 33 H 1.08998 * 109.47401 * 60.27875 * 7 6 4 34 34 H 0.96995 * 119.99926 * 0.02562 * 10 8 7 35 35 H 0.97000 * 119.99858 * 180.02562 * 14 13 11 36 36 H 1.08007 * 120.29645 * 179.71977 * 19 3 2 37 37 H 1.08001 * 120.22703 * 0.25874 * 21 20 19 38 38 H 1.08000 * 119.65352 * 180.02562 * 22 21 20 39 39 H 1.07989 * 119.63491 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.19648 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1321 1.2059 0.0000 4 6 1.3490 2.4554 0.0006 5 8 0.1379 2.4140 -0.0995 6 7 1.9758 3.6434 0.1122 7 6 1.1983 4.8850 0.1068 8 6 2.1304 6.0620 0.2370 9 8 3.3266 5.8814 0.3252 10 7 1.6350 7.3153 0.2545 11 6 2.4830 8.3859 0.3735 12 1 3.5480 8.2251 0.4529 13 6 1.9722 9.6780 0.3920 14 7 0.6763 9.8737 0.2960 15 14 3.1277 11.1369 0.5535 16 1 3.5470 11.5882 -0.7977 17 1 2.4297 12.2463 1.2515 18 1 4.3250 10.7359 1.3351 19 6 3.4863 1.2793 -0.0060 20 6 4.2724 0.0457 -0.0009 21 6 5.6684 0.0632 -0.0027 22 6 6.3629 -1.1268 -0.0032 23 6 5.6891 -2.3406 -0.0027 24 6 4.3107 -2.3814 -0.0023 25 6 3.5872 -1.1912 -0.0019 26 6 2.1174 -1.1790 -0.0005 27 8 1.4946 -2.2251 -0.0002 28 1 -0.3633 0.4385 -0.9294 29 1 -0.3633 -1.0241 0.0849 30 1 -0.3633 0.5856 0.8445 31 1 2.9419 3.6764 0.1918 32 1 0.6438 4.9625 -0.8285 33 1 0.5001 4.8802 0.9438 34 1 0.6785 7.4597 0.1836 35 1 0.3198 10.7757 0.3086 36 1 3.9798 2.2400 -0.0104 37 1 6.2004 1.0032 -0.0037 38 1 7.4429 -1.1152 -0.0041 39 1 6.2506 -3.2630 -0.0035 40 1 3.7954 -3.3305 -0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344160964.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:13 Heat of formation + Delta-G solvation = -54.170652 kcal Electronic energy + Delta-G solvation = -26682.558283 eV Core-core repulsion = 22655.689968 eV Total energy + Delta-G solvation = -4026.868314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.60629 -39.81931 -38.66957 -38.27183 -36.61872 -34.93720 -34.04147 -32.96946 -31.60741 -31.49482 -30.33823 -27.70418 -27.35855 -25.10278 -24.32170 -23.50991 -22.01250 -21.13317 -19.82540 -18.83553 -18.48654 -17.98394 -17.61203 -16.47901 -16.40412 -15.95017 -15.48925 -15.37436 -15.32113 -15.01359 -14.78426 -14.52388 -14.13998 -14.09149 -13.86238 -13.54326 -13.38852 -13.14623 -12.85214 -12.45229 -12.31024 -12.10077 -12.07497 -11.70716 -11.53573 -11.49969 -11.19114 -10.52369 -10.44687 -10.39286 -9.88734 -9.76849 -9.72417 -9.37247 -9.10804 -8.76541 -8.19836 -8.01641 -6.59996 -4.02397 0.17606 0.55761 1.57883 2.25759 2.44987 2.96446 3.02251 3.05797 3.17685 3.22790 3.62272 3.69318 4.02245 4.04943 4.17300 4.42634 4.58355 4.70294 4.72510 4.92474 4.94339 5.08247 5.19810 5.28912 5.40678 5.46273 5.46811 5.64373 5.69536 5.77891 5.80483 5.91232 5.93145 6.01378 6.09726 6.13938 6.34888 6.50788 6.83442 7.38054 7.41739 7.64348 7.81236 8.01126 8.34380 8.95460 9.28650 9.75560 10.56581 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.002492 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.569973 B =11234.307747 C =12665.566819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.504 5.504 3 C 0.108 3.892 4 C 0.553 3.447 5 O -0.531 6.531 6 N -0.688 5.688 7 C 0.109 3.891 8 C 0.425 3.575 9 O -0.598 6.598 10 N -0.545 5.545 11 C -0.307 4.307 12 H 0.107 0.893 13 C 0.027 3.973 14 N -0.893 5.893 15 Si 0.934 3.066 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.148 4.148 20 C -0.004 4.004 21 C -0.114 4.114 22 C -0.086 4.086 23 C -0.133 4.133 24 C -0.052 4.052 25 C -0.142 4.142 26 C 0.548 3.452 27 O -0.527 6.527 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.414 0.586 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.396 0.604 35 H 0.275 0.725 36 H 0.158 0.842 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.076 -19.078 -0.742 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.220 5.220 3 C 0.004 3.996 4 C 0.337 3.663 5 O -0.409 6.409 6 N -0.343 5.343 7 C -0.018 4.018 8 C 0.211 3.789 9 O -0.485 6.485 10 N -0.179 5.179 11 C -0.436 4.436 12 H 0.124 0.876 13 C -0.176 4.176 14 N -0.532 5.532 15 Si 0.760 3.240 16 H -0.202 1.202 17 H -0.208 1.208 18 H -0.192 1.192 19 C -0.173 4.173 20 C -0.006 4.006 21 C -0.132 4.132 22 C -0.105 4.105 23 C -0.151 4.151 24 C -0.071 4.071 25 C -0.145 4.145 26 C 0.342 3.658 27 O -0.405 6.405 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.254 0.746 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.175 0.825 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.416 -19.616 -0.743 20.363 hybrid contribution 0.355 1.078 0.048 1.136 sum 5.771 -18.538 -0.695 19.428 Atomic orbital electron populations 1.22273 0.75908 1.03828 1.04985 1.44950 1.09576 1.04044 1.63461 1.19611 0.92028 0.86239 1.01748 1.17696 0.87203 0.83100 0.78272 1.90833 1.13235 1.86947 1.49926 1.45556 1.12433 1.04362 1.71929 1.21065 0.94068 0.82947 1.03764 1.19629 0.88896 0.84230 0.86183 1.90502 1.15654 1.84793 1.57519 1.41783 1.10337 1.04114 1.61709 1.19736 0.92279 0.83666 1.47906 0.87561 1.25346 0.96487 0.99184 0.96617 1.69609 1.11404 1.23487 1.48747 0.85801 0.79690 0.79883 0.78612 1.20201 1.20753 1.19249 1.21929 0.90709 0.98569 1.06085 1.18972 0.93775 0.91426 0.96385 1.21243 0.92171 0.99223 1.00596 1.21347 1.00473 0.92147 0.96509 1.21227 0.93874 0.98446 1.01534 1.21071 0.93816 0.97273 0.94930 1.19908 0.92027 0.94377 1.08221 1.18135 0.87837 0.82572 0.77219 1.90842 1.68860 1.30044 1.50793 0.89843 0.89497 0.89534 0.74590 0.89234 0.89240 0.76979 0.91474 0.82454 0.84320 0.85108 0.85149 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.86 59.85 0.53 1.42 16 2 N -0.50 -6.83 3.04 -120.92 -0.37 -7.20 16 3 C 0.11 1.40 6.63 -82.36 -0.55 0.86 16 4 C 0.55 7.94 7.66 -12.50 -0.10 7.84 16 5 O -0.53 -8.53 12.96 5.28 0.07 -8.46 16 6 N -0.69 -10.13 5.46 -62.55 -0.34 -10.47 16 7 C 0.11 1.78 6.15 -5.19 -0.03 1.75 16 8 C 0.43 8.98 7.85 -10.99 -0.09 8.90 16 9 O -0.60 -14.13 15.24 5.54 0.08 -14.05 16 10 N -0.55 -12.72 5.29 -10.96 -0.06 -12.78 16 11 C -0.31 -7.95 9.68 -14.93 -0.14 -8.09 16 12 H 0.11 2.87 7.16 -52.48 -0.38 2.49 16 13 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 14 N -0.89 -22.98 13.05 55.50 0.72 -22.25 16 15 Si 0.93 19.79 29.55 -169.99 -5.02 14.76 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 C -0.15 -1.65 9.46 -37.29 -0.35 -2.00 16 20 C 0.00 -0.04 5.89 -104.95 -0.62 -0.66 16 21 C -0.11 -0.98 9.86 -39.23 -0.39 -1.37 16 22 C -0.09 -0.63 10.01 -39.53 -0.40 -1.03 16 23 C -0.13 -1.02 10.01 -39.49 -0.40 -1.42 16 24 C -0.05 -0.52 9.65 -39.32 -0.38 -0.90 16 25 C -0.14 -1.72 5.90 -104.76 -0.62 -2.34 16 26 C 0.55 7.72 7.63 -12.73 -0.10 7.62 16 27 O -0.53 -8.42 15.77 5.15 0.08 -8.34 16 28 H 0.08 1.06 7.30 -51.93 -0.38 0.68 16 29 H 0.09 1.06 6.83 -51.93 -0.35 0.70 16 30 H 0.09 1.10 6.96 -51.93 -0.36 0.74 16 31 H 0.41 5.87 5.36 -40.82 -0.22 5.65 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.40 8.88 7.90 -40.82 -0.32 8.56 16 35 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.16 1.50 6.24 -52.48 -0.33 1.18 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 1.30 7.77 -52.49 -0.41 0.89 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -31.10 346.70 -7.32 -38.42 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -4.00 Total: 13.97 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: -3.71 Total: 11.17 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.04 Total: -52.70 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: 0.23 Total: -30.84 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.10 -7.32 -38.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344160964.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.755 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds