Wall clock time and date at job start Tue Mar 31 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38275 * 119.93410 * 2 1 4 4 C 1.38120 * 120.06848 * 180.02562 * 3 2 1 5 5 C 1.38832 * 119.93245 * 359.97438 * 4 3 2 6 6 N 1.40223 * 120.06481 * 180.02562 * 5 4 3 7 7 C 1.35073 * 126.61141 * 179.97438 * 6 5 4 8 8 C 1.36628 * 106.79579 * 180.02562 * 7 6 5 9 9 C 1.47503 * 125.76812 * 180.26005 * 8 7 6 10 10 O 1.21592 * 120.00337 * 359.71797 * 9 8 7 11 11 N 1.34782 * 119.99721 * 179.71413 * 9 8 7 12 12 C 1.46504 * 119.99595 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.46718 * 180.02562 * 12 11 9 14 14 O 1.21297 * 120.00583 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99965 * 180.02562 * 13 12 11 16 16 C 1.37099 * 120.00260 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99647 * 0.02562 * 16 15 13 18 18 C 1.38952 * 120.00200 * 179.97438 * 16 15 13 19 19 N 1.31405 * 119.99734 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00133 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47172 * 60.00031 * 20 18 16 22 22 H 1.48494 * 109.46977 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46721 * 300.00106 * 20 18 16 24 24 N 1.34424 * 108.46069 * 359.97438 * 8 7 6 25 25 N 1.28746 * 109.58302 * 0.02562 * 24 8 7 26 26 C 1.38823 * 119.86559 * 0.28045 * 5 4 3 27 27 C 1.38122 * 119.93575 * 359.46491 * 26 5 4 28 28 H 1.08999 * 109.47064 * 89.99977 * 1 2 3 29 29 H 1.09003 * 109.47045 * 209.99858 * 1 2 3 30 30 H 1.08998 * 109.47240 * 329.99239 * 1 2 3 31 31 H 1.08008 * 119.96648 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.03203 * 179.97438 * 4 3 2 33 33 H 1.07998 * 126.60471 * 0.04756 * 7 6 5 34 34 H 0.96999 * 120.00406 * 0.02562 * 11 9 8 35 35 H 1.08998 * 109.47039 * 299.99776 * 12 11 9 36 36 H 1.08995 * 109.47083 * 60.00130 * 12 11 9 37 37 H 0.96995 * 120.00292 * 359.97438 * 15 13 12 38 38 H 0.97001 * 120.00319 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.03013 * 179.69810 * 26 5 4 40 40 H 1.07997 * 119.96521 * 180.25331 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5782 1.2015 -0.0005 5 6 4.2738 0.0000 -0.0005 6 7 5.6760 0.0001 -0.0005 7 6 6.4816 -1.0841 0.0000 8 6 7.7670 -0.6209 0.0003 9 6 8.9838 -1.4546 -0.0045 10 8 8.8903 -2.6669 -0.0042 11 7 10.1994 -0.8724 -0.0094 12 6 11.4080 -1.7004 -0.0148 13 6 12.6254 -0.8122 -0.0189 14 8 12.4962 0.3939 -0.0170 15 7 13.8577 -1.3578 -0.0247 16 6 14.9653 -0.5497 -0.0290 17 1 14.8501 0.5242 -0.0273 18 6 16.2358 -1.1123 -0.0344 19 7 16.3757 -2.4189 -0.0359 20 14 17.7448 -0.0113 -0.0395 21 1 17.7369 0.8451 1.1737 22 1 18.9698 -0.8506 -0.0456 23 1 17.7272 0.8469 -1.2514 24 7 7.7351 0.7229 -0.0005 25 7 6.5123 1.1256 -0.0008 26 6 3.5783 -1.2014 -0.0059 27 6 2.1971 -1.1983 0.0000 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6554 2.1327 -0.0004 32 1 4.1165 2.1378 -0.0010 33 1 6.1698 -2.1181 -0.0003 34 1 10.2741 0.0947 -0.0093 35 1 11.4211 -2.3300 0.8749 36 1 11.4136 -2.3293 -0.9050 37 1 13.9611 -2.3222 -0.0258 38 1 17.2626 -2.8117 -0.0401 39 1 4.1167 -2.1376 -0.0108 40 1 1.6555 -2.1326 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344205136.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:50 Heat of formation + Delta-G solvation = 51.461390 kcal Electronic energy + Delta-G solvation = -25472.406185 eV Core-core repulsion = 21482.411171 eV Total energy + Delta-G solvation = -3989.995014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65045 -40.00637 -39.31281 -38.02612 -35.45437 -34.45756 -33.66760 -32.17588 -31.78008 -31.36648 -31.02720 -28.05006 -27.15927 -24.85780 -24.02622 -23.73097 -22.50709 -21.47323 -20.32728 -19.61518 -18.97418 -18.05554 -17.09270 -16.42858 -16.11168 -15.88008 -15.81032 -15.30036 -15.18382 -15.16889 -14.56752 -14.38645 -14.32077 -14.11071 -14.03579 -13.78125 -13.37509 -12.96860 -12.89832 -12.52581 -12.25579 -12.16743 -11.94795 -11.66482 -11.60036 -11.46403 -11.32859 -11.07274 -10.47437 -10.28820 -10.09884 -9.73290 -9.65407 -9.58994 -8.90031 -8.73698 -8.59402 -8.06420 -6.47994 -3.89732 0.03488 0.70461 1.34627 1.59258 1.63738 3.09832 3.17072 3.19621 3.24635 3.30618 3.31938 3.77893 3.91747 3.99937 4.14839 4.21656 4.28030 4.37838 4.57352 4.69731 4.74189 4.88652 4.90003 4.95331 5.04664 5.13740 5.20272 5.36804 5.38003 5.49862 5.62995 5.80519 5.90340 5.94645 5.95943 6.02887 6.09159 6.41276 6.61615 7.49625 7.56306 7.85317 7.95174 8.32521 8.49343 9.08336 9.42591 9.91061 10.68854 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.046492 B = 0.001741 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.115972 B =16081.830403 C =16663.464011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.082 4.082 3 C -0.100 4.100 4 C -0.099 4.099 5 C 0.130 3.870 6 N -0.314 5.314 7 C 0.091 3.909 8 C -0.085 4.085 9 C 0.601 3.399 10 O -0.546 6.546 11 N -0.688 5.688 12 C 0.108 3.892 13 C 0.427 3.573 14 O -0.592 6.592 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.934 3.066 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.188 5.188 25 N -0.057 5.057 26 C -0.120 4.120 27 C -0.097 4.097 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.208 0.792 34 H 0.420 0.580 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.137 0.863 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.535 0.232 0.042 31.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.083 4.083 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.038 3.962 6 N -0.092 5.092 7 C -0.063 4.063 8 C -0.223 4.223 9 C 0.384 3.616 10 O -0.423 6.423 11 N -0.341 5.341 12 C -0.019 4.019 13 C 0.213 3.787 14 O -0.478 6.478 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.536 5.536 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 N -0.062 5.062 25 N -0.036 5.036 26 C -0.141 4.141 27 C -0.116 4.116 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.161 0.839 33 H 0.225 0.775 34 H 0.259 0.741 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -31.311 1.583 0.042 31.351 hybrid contribution 0.885 -0.768 -0.007 1.171 sum -30.426 0.815 0.035 30.437 Atomic orbital electron populations 1.20841 0.90413 1.03308 1.02809 1.20126 0.96788 0.92979 0.98396 1.21005 0.92893 0.98357 0.99571 1.20986 0.94424 0.96982 0.99521 1.17612 0.77429 0.95833 1.05307 1.47660 1.05981 1.06627 1.48950 1.23336 0.89722 0.94929 0.98282 1.21511 0.94548 0.90267 1.15956 1.16611 0.81629 0.86198 0.77121 1.90799 1.86727 1.12827 1.51963 1.45514 1.04016 1.12435 1.72144 1.21032 0.83870 0.93413 1.03572 1.19714 0.84444 0.88845 0.85715 1.90529 1.85708 1.14629 1.56974 1.41768 1.04048 1.09795 1.62799 1.19699 0.83109 0.92378 1.48253 0.87691 1.25310 0.99317 0.96227 0.96810 1.69604 1.24905 1.09663 1.49399 0.85870 0.79653 0.79261 0.79168 1.19785 1.20890 1.19790 1.74746 1.12182 1.10413 1.08875 1.82094 0.93218 1.05629 1.22641 1.20967 0.94949 0.96170 1.01983 1.20916 0.92661 0.98378 0.99637 0.90663 0.91118 0.91114 0.84607 0.83927 0.77512 0.74058 0.89422 0.89418 0.77036 0.91585 0.84567 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.33 10.01 36.01 0.36 0.03 16 2 C -0.08 -0.42 5.88 -104.59 -0.62 -1.03 16 3 C -0.10 -0.57 9.69 -39.61 -0.38 -0.96 16 4 C -0.10 -0.79 9.68 -39.41 -0.38 -1.17 16 5 C 0.13 1.16 6.70 -83.58 -0.56 0.60 16 6 N -0.31 -3.59 3.82 -10.42 -0.04 -3.63 16 7 C 0.09 1.03 10.60 -16.71 -0.18 0.86 16 8 C -0.08 -1.25 6.99 -83.54 -0.58 -1.84 16 9 C 0.60 10.10 7.82 -12.48 -0.10 10.00 16 10 O -0.55 -9.84 16.86 5.29 0.09 -9.75 16 11 N -0.69 -12.45 5.53 -62.54 -0.35 -12.79 16 12 C 0.11 2.03 6.15 -5.19 -0.03 2.00 16 13 C 0.43 10.02 7.85 -10.99 -0.09 9.94 16 14 O -0.59 -15.72 15.24 5.54 0.08 -15.63 16 15 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 16 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 17 H 0.11 3.01 7.16 -52.48 -0.38 2.64 16 18 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 19 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 20 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 N -0.19 -2.97 12.03 32.85 0.40 -2.58 16 25 N -0.06 -0.81 13.12 60.35 0.79 -0.01 16 26 C -0.12 -0.79 9.47 -39.41 -0.37 -1.16 16 27 C -0.10 -0.50 9.69 -39.61 -0.38 -0.88 16 28 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.14 8.08 -51.93 -0.42 -0.28 16 30 H 0.07 0.15 8.08 -51.93 -0.42 -0.27 16 31 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.14 1.15 7.73 -52.49 -0.41 0.75 16 33 H 0.21 1.61 7.13 -52.49 -0.37 1.23 16 34 H 0.42 7.98 7.12 -40.82 -0.29 7.68 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 38 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.14 0.65 6.81 -52.48 -0.36 0.29 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 360.39 15.07 5.43 5.43 Total: -1.00 -33.36 360.39 -5.72 -39.08 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -4.21 Total: 12.78 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -3.55 Total: 8.45 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 1.47 Total: -56.12 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: 0.17 Total: -25.39 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.36 -5.72 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344205136.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.540 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds