Wall clock time and date at job start Tue Mar 31 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99987 * 2 1 4 4 H 1.48500 * 109.46876 * 269.99902 * 3 2 1 5 5 H 1.48503 * 109.46714 * 29.99356 * 3 2 1 6 6 H 1.48492 * 109.47131 * 149.99538 * 3 2 1 7 7 C 1.37881 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99982 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99923 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47060 * 180.02562 * 9 7 2 11 11 N 1.46495 * 109.47280 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00342 * 179.97438 * 11 10 9 13 13 O 1.21368 * 119.99655 * 359.97438 * 12 11 10 14 14 C 1.49337 * 120.00470 * 180.02562 * 12 11 10 15 15 O 1.21388 * 119.99891 * 359.97438 * 14 12 11 16 16 N 1.34770 * 120.00282 * 180.02562 * 14 12 11 17 17 C 1.39763 * 120.00344 * 185.27632 * 16 14 12 18 18 C 1.38957 * 120.00938 * 33.37973 * 17 16 14 19 19 C 1.37998 * 119.98766 * 179.74922 * 18 17 16 20 20 C 1.38860 * 120.01263 * 0.25481 * 19 18 17 21 21 N 1.40295 * 119.98830 * 180.02562 * 20 19 18 22 22 C 1.36098 * 125.93885 * 180.02562 * 21 20 19 23 23 C 1.35384 * 106.04877 * 179.97438 * 22 21 20 24 24 N 1.33762 * 106.53272 * 359.97438 * 23 22 21 25 25 N 1.28604 * 109.06351 * 359.76143 * 24 23 22 26 26 C 1.38866 * 120.02162 * 359.97438 * 20 19 18 27 27 C 1.37998 * 120.01070 * 0.02562 * 26 20 19 28 28 H 0.97001 * 119.99897 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47100 * 60.00158 * 9 7 2 30 30 H 1.09002 * 109.46843 * 300.00394 * 9 7 2 31 31 H 1.08999 * 109.47102 * 59.99521 * 10 9 7 32 32 H 1.09002 * 109.46675 * 299.99937 * 10 9 7 33 33 H 0.97005 * 119.99752 * 0.02562 * 11 10 9 34 34 H 0.97005 * 119.99994 * 5.26753 * 16 14 12 35 35 H 1.08001 * 120.00408 * 0.02671 * 18 17 16 36 36 H 1.08003 * 119.99216 * 180.27653 * 19 18 17 37 37 H 1.08004 * 126.97805 * 359.97301 * 22 21 20 38 38 H 1.08000 * 126.73162 * 179.97438 * 23 22 21 39 39 H 1.07995 * 119.99418 * 179.97438 * 26 20 19 40 40 H 1.07999 * 120.00426 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6364 0.0010 11 7 5.4866 -2.6364 0.0009 12 6 6.1606 -3.8036 0.0014 13 8 5.5538 -4.8547 0.0022 14 6 7.6540 -3.8036 0.0019 15 8 8.2609 -2.7523 0.0015 16 7 8.3279 -4.9707 0.0018 17 6 9.7210 -4.9733 0.1136 18 6 10.3590 -4.0015 0.8749 19 6 11.7342 -4.0076 0.9891 20 6 12.4809 -4.9814 0.3393 21 7 13.8789 -4.9875 0.4562 22 6 14.7254 -5.8801 -0.1260 23 6 15.9730 -5.5135 0.2509 24 7 15.8338 -4.4351 1.0299 25 7 14.5845 -4.1459 1.1277 26 6 11.8441 -5.9500 -0.4255 27 6 10.4690 -5.9448 -0.5405 28 1 -0.4850 0.8401 -0.0004 29 1 3.8746 -0.6800 0.8911 30 1 3.8752 -0.6802 -0.8888 31 1 3.6587 -3.1501 -0.8892 32 1 3.6580 -3.1504 0.8908 33 1 5.9716 -1.7963 0.0014 34 1 7.8460 -5.8090 -0.0758 35 1 9.7783 -3.2443 1.3806 36 1 12.2298 -3.2550 1.5845 37 1 14.4565 -6.7121 -0.7600 38 1 16.8989 -5.9970 -0.0236 39 1 12.4253 -6.7069 -0.9311 40 1 9.9739 -6.6978 -1.1356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344408430.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:44 Heat of formation + Delta-G solvation = 70.244131 kcal Electronic energy + Delta-G solvation = -25572.525386 eV Core-core repulsion = 21583.344853 eV Total energy + Delta-G solvation = -3989.180533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.84876 -41.36568 -39.79650 -38.51303 -36.21845 -35.29267 -33.96979 -32.90040 -32.20739 -31.19349 -30.43565 -29.63748 -26.36827 -24.86321 -24.36748 -23.39819 -22.33073 -21.65067 -21.00795 -20.42578 -19.22581 -18.86988 -17.87114 -17.04590 -16.91073 -16.54777 -16.26698 -15.86487 -15.52518 -15.14510 -14.99106 -14.63504 -14.52635 -14.24850 -14.10930 -13.86126 -13.68596 -13.42488 -13.20008 -12.68148 -12.43989 -12.02248 -11.85657 -11.62232 -11.57333 -11.44685 -11.33316 -10.55563 -10.53024 -10.41354 -10.03243 -9.92689 -9.77309 -9.62546 -9.41856 -8.95173 -8.67910 -8.59410 -6.18216 -4.19602 -0.00577 0.66066 1.11792 1.56883 1.77252 2.07726 2.11281 2.95011 3.19029 3.21877 3.30487 3.31145 3.44314 3.83509 4.00222 4.19362 4.32139 4.34548 4.41414 4.54766 4.60282 4.72816 4.84895 5.08312 5.14758 5.15838 5.30836 5.57334 5.58402 5.74002 5.80746 5.83790 5.98729 6.05463 6.29518 6.36492 6.37562 6.58564 6.94279 7.09025 7.24356 7.50953 7.57325 7.96841 8.00025 8.34649 8.84510 9.41391 10.94375 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.028479 B = 0.001828 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.938772 B =15314.871777 C =16156.963114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.126 3.874 11 N -0.686 5.686 12 C 0.501 3.499 13 O -0.523 6.523 14 C 0.510 3.490 15 O -0.494 6.494 16 N -0.650 5.650 17 C 0.163 3.837 18 C -0.102 4.102 19 C -0.075 4.075 20 C 0.098 3.902 21 N -0.236 5.236 22 C -0.051 4.051 23 C -0.045 4.045 24 N -0.265 5.265 25 N -0.079 5.079 26 C -0.093 4.093 27 C -0.122 4.122 28 H 0.266 0.734 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.410 0.590 34 H 0.427 0.573 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.194 0.806 38 H 0.195 0.805 39 H 0.141 0.859 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.970 -15.257 -1.677 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.337 5.337 12 C 0.280 3.720 13 O -0.401 6.401 14 C 0.293 3.707 15 O -0.367 6.367 16 N -0.297 5.297 17 C 0.067 3.933 18 C -0.123 4.123 19 C -0.095 4.095 20 C 0.006 3.994 21 N -0.024 5.024 22 C -0.200 4.200 23 C -0.201 4.201 24 N -0.131 5.131 25 N -0.057 5.057 26 C -0.114 4.114 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.246 0.754 34 H 0.266 0.734 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.211 0.789 38 H 0.212 0.788 39 H 0.158 0.842 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 27.717 -13.835 -0.742 30.987 hybrid contribution 0.307 -0.140 -0.877 0.939 sum 28.024 -13.975 -1.618 31.357 Atomic orbital electron populations 1.69894 1.06290 1.27196 1.49977 1.24983 0.94768 0.99169 0.94183 0.86774 0.80325 0.83507 0.78643 1.20132 1.21166 1.18977 1.20852 0.88343 0.94986 1.52290 0.90511 1.19832 0.98206 0.90810 0.97311 1.21782 0.74233 1.01089 1.02394 1.46234 1.09762 1.07843 1.69839 1.19629 0.86879 0.85562 0.79918 1.90785 1.69255 1.30871 1.49141 1.20729 0.89635 0.83741 0.76598 1.90802 1.69874 1.30828 1.45195 1.43247 1.04780 1.10650 1.71001 1.17894 0.82732 0.96842 0.95787 1.21159 0.93706 0.99500 0.97949 1.20871 0.93154 0.97200 0.98285 1.17650 0.77616 1.00123 1.03990 1.44754 1.06463 1.19426 1.31732 1.23850 0.90121 1.00274 1.05705 1.23679 0.98359 0.97202 1.00855 1.75139 1.07778 1.13795 1.16428 1.78398 0.97984 1.14255 1.15082 1.20629 0.94399 0.97784 0.98629 1.20775 0.92586 1.00577 1.00348 0.92436 0.95658 0.96109 0.91027 0.90991 0.75419 0.73380 0.83112 0.83414 0.78894 0.78805 0.84168 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.14 9.66 -34.44 -0.33 -14.47 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.02 -0.52 4.16 -27.88 -0.12 -0.63 16 10 C 0.13 2.34 5.61 -4.05 -0.02 2.31 16 11 N -0.69 -10.51 5.55 -60.77 -0.34 -10.84 16 12 C 0.50 7.15 7.89 -11.64 -0.09 7.06 16 13 O -0.52 -8.45 16.48 5.48 0.09 -8.36 16 14 C 0.51 6.09 7.62 -11.64 -0.09 6.00 16 15 O -0.49 -6.67 14.16 5.46 0.08 -6.59 16 16 N -0.65 -5.79 5.32 -10.28 -0.05 -5.84 16 17 C 0.16 1.35 6.28 -83.71 -0.53 0.82 16 18 C -0.10 -0.95 8.65 -39.40 -0.34 -1.29 16 19 C -0.07 -0.66 9.61 -39.44 -0.38 -1.04 16 20 C 0.10 0.79 6.68 -83.52 -0.56 0.23 16 21 N -0.24 -2.12 3.56 -10.44 -0.04 -2.16 16 22 C -0.05 -0.31 10.92 -16.68 -0.18 -0.50 16 23 C -0.05 -0.32 12.05 -17.73 -0.21 -0.54 16 24 N -0.27 -2.98 12.39 30.24 0.37 -2.61 16 25 N -0.08 -0.91 12.41 60.35 0.75 -0.16 16 26 C -0.09 -0.51 9.45 -39.44 -0.37 -0.89 16 27 C -0.12 -0.70 9.96 -39.40 -0.39 -1.09 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 30 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.41 5.76 7.94 -40.82 -0.32 5.43 16 34 H 0.43 3.04 8.30 -40.82 -0.34 2.70 16 35 H 0.15 1.53 6.41 -52.49 -0.34 1.19 16 36 H 0.15 1.30 7.69 -52.48 -0.40 0.90 16 37 H 0.19 0.33 7.10 -52.48 -0.37 -0.04 16 38 H 0.20 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.14 0.34 6.76 -52.49 -0.35 -0.02 16 40 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -34.02 353.71 -5.59 -39.61 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -4.17 Total: 3.60 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.71 Total: -2.12 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 1.47 Total: -47.40 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.17 Total: -14.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.02 -5.59 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344408430.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.856 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds