Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 120.00120 * 2 1 4 4 H 1.48493 * 109.47348 * 270.00601 * 3 2 1 5 5 H 1.48498 * 109.46875 * 30.00570 * 3 2 1 6 6 H 1.48502 * 109.47162 * 150.00276 * 3 2 1 7 7 C 1.37875 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00263 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99805 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47033 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.46981 * 179.97438 * 10 9 7 12 12 C 1.34782 * 120.00155 * 179.97438 * 11 10 9 13 13 O 1.21358 * 119.99743 * 0.02562 * 12 11 10 14 14 C 1.49340 * 120.00187 * 179.97438 * 12 11 10 15 15 O 1.21389 * 119.99680 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99997 * 180.02562 * 14 12 11 17 17 C 1.39817 * 119.99845 * 185.26995 * 16 14 12 18 18 C 1.39432 * 120.42878 * 32.75737 * 17 16 14 19 19 C 1.38292 * 118.42079 * 179.97438 * 18 17 16 20 20 C 1.38981 * 119.18703 * 0.02562 * 19 18 17 21 21 N 1.39887 * 119.60656 * 179.97438 * 20 19 18 22 22 C 1.35818 * 126.10340 * 180.02562 * 21 20 19 23 23 C 1.35309 * 107.61551 * 179.72468 * 22 21 20 24 24 C 1.39929 * 107.96395 * 0.36437 * 23 22 21 25 25 N 1.30836 * 108.37332 * 359.62674 * 24 23 22 26 26 N 1.32301 * 120.79225 * 0.24764 * 20 19 18 27 27 C 1.31835 * 121.72028 * 359.48409 * 26 20 19 28 28 H 0.97000 * 120.00264 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47089 * 60.00037 * 9 7 2 30 30 H 1.08997 * 109.46882 * 300.00332 * 9 7 2 31 31 H 1.09003 * 109.47389 * 60.00167 * 10 9 7 32 32 H 1.08996 * 109.46770 * 300.00015 * 10 9 7 33 33 H 0.97006 * 120.00195 * 0.02562 * 11 10 9 34 34 H 0.96996 * 119.99831 * 5.27960 * 16 14 12 35 35 H 1.07997 * 120.79063 * 359.95957 * 18 17 16 36 36 H 1.08005 * 120.41079 * 179.97438 * 19 18 17 37 37 H 1.07999 * 126.19466 * 359.97438 * 22 21 20 38 38 H 1.07999 * 126.01237 * 180.21167 * 23 22 21 39 39 H 1.08000 * 125.81355 * 179.88925 * 24 23 22 40 40 H 1.08005 * 119.63422 * 180.26526 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5128 -4.9308 0.0001 12 6 2.1867 -6.0980 -0.0003 13 8 3.4003 -6.0980 -0.0007 14 6 1.4400 -7.3913 0.0009 15 8 0.2261 -7.3913 0.0018 16 7 2.1139 -8.5585 0.0010 17 6 1.4191 -9.7668 -0.1091 18 6 0.2457 -9.8410 -0.8586 19 6 -0.4076 -11.0572 -0.9399 20 6 0.1228 -12.1571 -0.2763 21 7 -0.5311 -13.3914 -0.3522 22 6 -0.1324 -14.5462 0.2413 23 6 -1.0378 -15.5016 -0.0723 24 6 -2.0149 -14.9193 -0.8873 25 7 -1.7149 -13.6567 -1.0530 26 7 1.2359 -12.0497 0.4307 27 6 1.8885 -10.9082 0.5268 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8895 32 1 2.8719 -3.6043 -0.8905 33 1 0.5427 -4.9308 0.0000 34 1 3.0808 -8.5602 0.0776 35 1 -0.1438 -8.9694 -1.3634 36 1 -1.3193 -11.1509 -1.5114 37 1 0.7460 -14.6771 0.8559 38 1 -1.0097 -16.5326 0.2480 39 1 -2.8730 -15.4250 -1.3047 40 1 2.7965 -10.8596 1.1097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344433490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = 57.761485 kcal Electronic energy + Delta-G solvation = -25484.389805 eV Core-core repulsion = 21494.667984 eV Total energy + Delta-G solvation = -3989.721821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97372 -41.25467 -40.04152 -38.53621 -36.04777 -35.04823 -33.28388 -32.93672 -32.77686 -30.61350 -29.96547 -29.27065 -26.07573 -24.78957 -24.41086 -23.22455 -21.59966 -21.27382 -21.09605 -20.36423 -19.04907 -18.67961 -17.71483 -16.82404 -16.67377 -16.14813 -16.10041 -15.85310 -15.50869 -15.02343 -14.67701 -14.57721 -14.52266 -14.20098 -13.97370 -13.76718 -13.57611 -13.21563 -13.11611 -13.04734 -12.37968 -11.79684 -11.62707 -11.32328 -11.26550 -11.11880 -10.72364 -10.52484 -10.48682 -10.35969 -10.06920 -9.84916 -9.57069 -9.42559 -9.31593 -8.85184 -8.48447 -8.33299 -6.15555 -4.19702 0.14152 0.71189 1.25227 1.70069 1.73576 2.17281 2.37682 3.09708 3.25468 3.32027 3.35008 3.35673 3.53172 3.82540 4.08023 4.29349 4.33744 4.42758 4.51772 4.59720 4.71156 5.00109 5.15473 5.21575 5.25785 5.31966 5.53432 5.56393 5.69420 6.04004 6.06906 6.13109 6.14077 6.41991 6.57194 6.63318 6.67467 6.94035 7.27221 7.42555 7.45307 7.49427 7.65007 7.80639 8.04634 8.20915 8.85742 9.45712 10.95817 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.038181 B = 0.001699 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.166602 B =16472.833423 C =17080.438803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.118 3.882 11 N -0.681 5.681 12 C 0.501 3.499 13 O -0.527 6.527 14 C 0.510 3.490 15 O -0.496 6.496 16 N -0.643 5.643 17 C 0.090 3.910 18 C -0.055 4.055 19 C -0.138 4.138 20 C 0.349 3.651 21 N -0.323 5.323 22 C 0.079 3.921 23 C -0.268 4.268 24 C 0.062 3.938 25 N -0.285 5.285 26 N -0.485 5.485 27 C 0.116 3.884 28 H 0.263 0.737 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.412 0.588 34 H 0.428 0.572 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.193 0.807 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -29.609 -0.456 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.332 5.332 12 C 0.279 3.721 13 O -0.405 6.405 14 C 0.293 3.707 15 O -0.369 6.369 16 N -0.291 5.291 17 C -0.008 4.008 18 C -0.083 4.083 19 C -0.160 4.160 20 C 0.121 3.879 21 N -0.101 5.101 22 C -0.063 4.063 23 C -0.296 4.296 24 C -0.126 4.126 25 N -0.104 5.104 26 N -0.198 5.198 27 C -0.045 4.045 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.247 0.753 34 H 0.267 0.733 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.200 0.800 38 H 0.174 0.826 39 H 0.210 0.790 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.009 -28.927 -0.560 28.932 hybrid contribution 0.315 0.787 0.074 0.851 sum 0.325 -28.139 -0.486 28.145 Atomic orbital electron populations 1.69949 1.06111 1.27041 1.49871 1.24997 0.94901 0.99476 0.94841 0.86489 0.79797 0.82900 0.78228 1.20523 1.21129 1.19709 1.20995 0.93228 0.90176 1.51990 0.92124 1.19369 0.94181 0.90841 0.98321 1.22003 0.96335 0.80440 1.01560 1.46262 1.11905 1.05712 1.69308 1.19622 0.87638 0.84789 0.80008 1.90766 1.12927 1.87257 1.49556 1.20779 0.87865 0.85517 0.76586 1.90796 1.13372 1.87364 1.45366 1.43079 1.11946 1.02948 1.71131 1.18759 0.95943 0.87050 0.99058 1.21609 0.93540 0.98213 0.94930 1.21533 1.02339 0.90648 1.01512 1.17662 0.90523 0.83503 0.96215 1.45758 1.19250 1.06089 1.38968 1.22938 1.00510 0.85028 0.97847 1.21670 0.98118 1.01422 1.08409 1.24167 0.99794 0.91255 0.97385 1.77495 0.97838 1.17645 1.17384 1.66807 1.07064 1.27615 1.18297 1.22311 0.99750 0.85640 0.96824 0.92716 0.95607 0.95604 0.91616 0.91619 0.75250 0.73345 0.82407 0.82855 0.80038 0.82638 0.79015 0.80950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.10 16 10 C 0.12 2.31 5.61 -4.04 -0.02 2.29 16 11 N -0.68 -11.29 5.55 -60.77 -0.34 -11.62 16 12 C 0.50 7.63 7.89 -11.63 -0.09 7.54 16 13 O -0.53 -8.91 16.48 5.49 0.09 -8.82 16 14 C 0.51 6.59 7.65 -11.64 -0.09 6.51 16 15 O -0.50 -7.24 14.16 5.46 0.08 -7.17 16 16 N -0.64 -6.36 5.34 -10.18 -0.05 -6.42 16 17 C 0.09 0.88 6.31 -83.55 -0.53 0.35 16 18 C -0.05 -0.58 8.76 -39.12 -0.34 -0.92 16 19 C -0.14 -1.45 9.69 -39.29 -0.38 -1.83 16 20 C 0.35 3.84 7.55 -154.29 -1.17 2.68 16 21 N -0.32 -3.47 3.81 -12.08 -0.05 -3.52 16 22 C 0.08 0.67 11.10 -16.83 -0.19 0.48 16 23 C -0.27 -1.86 10.80 -39.99 -0.43 -2.29 16 24 C 0.06 0.47 12.02 -17.34 -0.21 0.27 16 25 N -0.28 -3.03 11.83 30.64 0.36 -2.66 16 26 N -0.49 -4.92 9.85 -12.10 -0.12 -5.04 16 27 C 0.12 0.99 11.11 -17.33 -0.19 0.80 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.41 6.46 7.94 -40.82 -0.32 6.13 16 34 H 0.43 3.37 8.30 -40.82 -0.34 3.04 16 35 H 0.16 1.73 6.47 -52.49 -0.34 1.39 16 36 H 0.15 1.53 7.68 -52.48 -0.40 1.12 16 37 H 0.18 1.18 8.05 -52.49 -0.42 0.75 16 38 H 0.16 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.19 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -32.58 360.54 -7.40 -39.98 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.33 Total: 5.67 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -4.19 Total: 3.16 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.54 Total: -54.07 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.17 Total: -15.99 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.58 -7.40 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344433490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.737 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds