Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35814 * 116.99872 * 2 1 4 4 C 1.40721 * 119.74606 * 179.97438 * 3 2 1 5 5 C 1.36013 * 119.73765 * 180.02562 * 4 3 2 6 6 C 1.40977 * 119.28455 * 359.75420 * 5 4 3 7 7 O 1.22099 * 120.24077 * 180.24969 * 6 5 4 8 8 N 1.34819 * 119.51430 * 0.51680 * 6 5 4 9 9 C 1.46499 * 119.89570 * 179.75764 * 8 6 5 10 10 C 1.50700 * 109.47080 * 89.71895 * 9 8 6 11 11 O 1.21285 * 120.00306 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99994 * 180.02562 * 10 9 8 13 13 C 1.37132 * 119.99975 * 4.37810 * 12 10 9 14 14 H 1.07998 * 120.00560 * 342.69465 * 13 12 10 15 15 C 1.38897 * 120.00025 * 162.68787 * 13 12 10 16 16 N 1.31425 * 119.99800 * 340.97673 * 15 13 12 17 17 Si 1.86798 * 120.00086 * 160.97417 * 15 13 12 18 18 H 1.48502 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47111 * 120.00023 * 17 15 13 20 20 H 1.48495 * 109.47030 * 240.00204 * 17 15 13 21 21 C 1.39790 * 119.99756 * 184.38255 * 12 10 9 22 22 C 1.38960 * 120.08111 * 106.21211 * 21 12 10 23 23 C 1.38081 * 119.92320 * 180.29343 * 22 21 12 24 24 C 1.38303 * 120.07794 * 359.97438 * 23 22 21 25 25 C 1.38306 * 120.15661 * 359.97438 * 24 23 22 26 26 C 1.38079 * 120.07981 * 0.02562 * 25 24 23 27 27 N 1.30941 * 119.74892 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47161 * 300.00265 * 1 2 3 30 30 H 1.09005 * 109.47278 * 60.00043 * 1 2 3 31 31 H 1.07995 * 120.13711 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.35672 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46843 * 329.72340 * 9 8 6 34 34 H 1.09001 * 109.47660 * 209.72227 * 9 8 6 35 35 H 0.96996 * 120.00014 * 185.06451 * 16 15 13 36 36 H 1.08001 * 120.03554 * 0.25105 * 22 21 12 37 37 H 1.08004 * 119.95721 * 180.02562 * 23 22 21 38 38 H 1.08003 * 119.91878 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.95666 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.03999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 3.4512 1.2776 0.0005 5 6 4.0685 2.4896 0.0011 6 6 3.2858 3.6621 -0.0042 7 8 3.8217 4.7592 -0.0084 8 7 1.9412 3.5631 0.0009 9 6 1.1198 4.7762 0.0008 10 6 0.8388 5.1925 -1.4200 11 8 1.2807 4.5399 -2.3419 12 7 0.0963 6.2900 -1.6663 13 6 -0.3280 7.0782 -0.6274 14 1 -0.3185 6.6931 0.3815 15 6 -0.7698 8.3720 -0.8727 16 7 -0.4462 8.9752 -1.9946 17 14 -1.8238 9.2545 0.3920 18 1 -2.0456 8.3641 1.5596 19 1 -1.1325 10.4913 0.8363 20 1 -3.1319 9.6093 -0.2148 21 6 -0.2413 6.6248 -2.9809 22 6 -1.5389 6.4291 -3.4381 23 6 -1.8673 6.7553 -4.7390 24 6 -0.9068 7.2768 -5.5865 25 6 0.3854 7.4739 -5.1345 26 6 0.7210 7.1500 -3.8349 27 7 1.3276 2.3051 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.0375 0.3707 0.0005 32 1 5.1466 2.5530 0.0011 33 1 1.6528 5.5759 0.5151 34 1 0.1789 4.5780 0.5142 35 1 -0.6919 9.9030 -2.1347 36 1 -2.2894 6.0217 -2.7769 37 1 -2.8757 6.6038 -5.0949 38 1 -1.1664 7.5306 -6.6037 39 1 1.1330 7.8809 -5.7992 40 1 1.7302 7.3038 -3.4828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347630708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = 17.869394 kcal Electronic energy + Delta-G solvation = -28126.884723 eV Core-core repulsion = 24103.140300 eV Total energy + Delta-G solvation = -4023.744423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93646 -39.43600 -38.91481 -37.25400 -36.30617 -34.83028 -33.87861 -31.74773 -30.96776 -29.90437 -29.41389 -28.19997 -26.88173 -25.02245 -24.11796 -22.94100 -21.65381 -21.48855 -19.45729 -18.70334 -18.31772 -17.57301 -16.79967 -16.39096 -16.04288 -15.64168 -15.27944 -14.94705 -14.84352 -14.74557 -14.46681 -14.18601 -13.84999 -13.41146 -13.31675 -13.10719 -12.75301 -12.50543 -12.44883 -12.06302 -11.68544 -11.59753 -11.45168 -11.19294 -11.08993 -10.99271 -10.92725 -10.54783 -10.38259 -10.29736 -10.14495 -9.54358 -9.45432 -8.83917 -8.24911 -8.08615 -7.88151 -7.51431 -6.34522 -4.07996 0.49044 1.98479 2.14070 2.43094 2.49044 3.01557 3.04659 3.16445 3.19219 3.54383 3.64274 3.98781 4.25464 4.54594 4.69847 4.77218 4.81196 5.03070 5.13738 5.22697 5.38154 5.55438 5.69944 5.73926 5.77303 5.81662 5.88208 5.91075 5.95601 6.02276 6.29200 6.41098 6.55275 6.78158 6.98117 7.02138 7.25349 7.31830 7.43667 7.57878 7.73691 7.80386 7.94031 8.17171 8.35899 8.91811 9.26121 9.69199 10.55034 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.004179 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.754036 B = 6698.900530 C = 7311.264020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.275 3.725 4 C -0.081 4.081 5 C -0.137 4.137 6 C 0.496 3.504 7 O -0.531 6.531 8 N -0.364 5.364 9 C 0.128 3.872 10 C 0.456 3.544 11 O -0.585 6.585 12 N -0.406 5.406 13 C -0.364 4.364 14 H 0.104 0.896 15 C 0.050 3.950 16 N -0.839 5.839 17 Si 0.919 3.081 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.278 1.278 21 C 0.235 3.765 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.146 4.146 25 C -0.121 4.121 26 C -0.068 4.068 27 N -0.275 5.275 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.154 0.846 32 H 0.168 0.832 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.273 0.727 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.840 -12.045 3.551 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.202 6.202 3 C 0.060 3.940 4 C -0.105 4.105 5 C -0.166 4.166 6 C 0.290 3.710 7 O -0.409 6.409 8 N -0.186 5.186 9 C 0.004 3.996 10 C 0.245 3.755 11 O -0.469 6.469 12 N -0.122 5.122 13 C -0.490 4.490 14 H 0.121 0.879 15 C -0.159 4.159 16 N -0.473 5.473 17 Si 0.745 3.255 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.204 1.204 21 C 0.144 3.856 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.164 4.164 25 C -0.140 4.140 26 C -0.088 4.088 27 N -0.109 5.109 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.455 -11.509 2.990 11.900 hybrid contribution -0.110 0.696 0.585 0.916 sum 0.345 -10.814 3.575 11.395 Atomic orbital electron populations 1.22988 0.76806 1.03415 1.03066 1.86298 1.23165 1.22015 1.88760 1.20324 0.90341 0.85518 0.97790 1.21316 0.91685 1.00139 0.97364 1.22646 1.02464 0.90935 1.00593 1.17550 0.82052 0.91377 0.80050 1.91023 1.70232 1.28281 1.51323 1.48710 1.05518 1.02274 1.62119 1.21409 0.96644 0.83687 0.97817 1.20136 0.81399 0.83684 0.90309 1.90597 1.54133 1.56615 1.45577 1.41228 1.44658 1.21847 1.04503 1.19571 1.45777 0.95390 0.88271 0.87884 1.25258 0.96927 0.96528 0.97207 1.69938 1.40990 1.11740 1.24660 0.85996 0.79876 0.79344 0.80266 1.19098 1.20548 1.20400 1.17108 0.92066 0.92626 0.83763 1.20949 0.95983 1.01953 0.95389 1.20659 0.98276 1.01399 0.93885 1.20750 0.93818 1.03058 0.98788 1.20715 0.96089 1.01577 0.95594 1.20852 0.98908 0.95987 0.93025 1.74882 1.26507 0.90369 1.19151 0.88219 0.91975 0.91731 0.82787 0.81417 0.85505 0.86904 0.91583 0.87355 0.87541 0.87706 0.87518 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.39 101.05 1.05 1.37 16 2 O -0.30 -3.59 10.49 -19.16 -0.20 -3.79 16 3 C 0.28 3.85 7.61 -16.99 -0.13 3.73 16 4 C -0.08 -0.95 10.00 -39.44 -0.39 -1.34 16 5 C -0.14 -1.87 10.01 -39.34 -0.39 -2.27 16 6 C 0.50 9.40 7.50 -15.20 -0.11 9.29 16 7 O -0.53 -11.90 16.71 4.83 0.08 -11.82 16 8 N -0.36 -6.98 3.00 -64.52 -0.19 -7.17 16 9 C 0.13 2.61 4.60 -5.19 -0.02 2.59 16 10 C 0.46 11.22 7.62 -10.98 -0.08 11.14 16 11 O -0.59 -15.94 16.22 5.55 0.09 -15.85 16 12 N -0.41 -10.24 2.66 -58.97 -0.16 -10.40 16 13 C -0.36 -8.94 9.09 -14.94 -0.14 -9.07 16 14 H 0.10 2.30 6.56 -52.49 -0.34 1.96 16 15 C 0.05 1.23 5.15 -17.48 -0.09 1.14 16 16 N -0.84 -21.70 10.73 55.49 0.60 -21.11 16 17 Si 0.92 19.00 29.60 -169.99 -5.03 13.96 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 21 C 0.24 5.91 2.43 -83.69 -0.20 5.71 16 22 C -0.12 -2.84 9.84 -39.37 -0.39 -3.23 16 23 C -0.12 -2.50 10.04 -39.62 -0.40 -2.90 16 24 C -0.15 -2.86 10.04 -39.53 -0.40 -3.26 16 25 C -0.12 -2.57 10.04 -39.61 -0.40 -2.96 16 26 C -0.07 -1.68 8.68 -39.37 -0.34 -2.02 16 27 N -0.28 -4.65 10.42 30.59 0.32 -4.34 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 30 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 31 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.17 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.13 2.59 7.27 -51.93 -0.38 2.21 16 34 H 0.11 2.02 7.86 -51.93 -0.41 1.61 16 35 H 0.27 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.11 2.41 8.06 -52.49 -0.42 1.98 16 37 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 39 H 0.11 1.96 8.06 -52.49 -0.42 1.53 16 40 H 0.11 2.74 8.06 -52.49 -0.42 2.31 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -33.46 354.93 -6.08 -39.54 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.49 Total: 7.73 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -2.44 Total: 7.89 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.56 Total: -43.02 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.03 Total: -31.45 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.46 -6.08 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347630708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.409 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds