Wall clock time and date at job start Tue Mar 31 2020 05:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35814 * 116.99872 * 2 1 4 4 C 1.40721 * 119.74606 * 179.97438 * 3 2 1 5 5 C 1.36013 * 119.73765 * 180.02562 * 4 3 2 6 6 C 1.40977 * 119.28455 * 359.75420 * 5 4 3 7 7 O 1.22099 * 120.24077 * 180.24969 * 6 5 4 8 8 N 1.34819 * 119.51430 * 0.51680 * 6 5 4 9 9 C 1.46499 * 119.89570 * 179.75764 * 8 6 5 10 10 C 1.50700 * 109.47080 * 89.71895 * 9 8 6 11 11 O 1.21285 * 120.00306 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99994 * 180.02562 * 10 9 8 13 13 C 1.37132 * 119.99975 * 4.37810 * 12 10 9 14 14 H 1.07998 * 120.00560 * 342.69465 * 13 12 10 15 15 C 1.38897 * 120.00025 * 162.68787 * 13 12 10 16 16 N 1.31425 * 119.99800 * 340.97673 * 15 13 12 17 17 Si 1.86798 * 120.00086 * 160.97417 * 15 13 12 18 18 H 1.48502 * 109.47055 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47111 * 120.00023 * 17 15 13 20 20 H 1.48495 * 109.47030 * 240.00204 * 17 15 13 21 21 C 1.39790 * 119.99756 * 184.38255 * 12 10 9 22 22 C 1.38960 * 120.08111 * 106.21211 * 21 12 10 23 23 C 1.38081 * 119.92320 * 180.29343 * 22 21 12 24 24 C 1.38303 * 120.07794 * 359.97438 * 23 22 21 25 25 C 1.38306 * 120.15661 * 359.97438 * 24 23 22 26 26 C 1.38079 * 120.07981 * 0.02562 * 25 24 23 27 27 N 1.30941 * 119.74892 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47161 * 300.00265 * 1 2 3 30 30 H 1.09005 * 109.47278 * 60.00043 * 1 2 3 31 31 H 1.07995 * 120.13711 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.35672 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46843 * 329.72340 * 9 8 6 34 34 H 1.09001 * 109.47660 * 209.72227 * 9 8 6 35 35 H 0.96996 * 120.00014 * 185.06451 * 16 15 13 36 36 H 1.08001 * 120.03554 * 0.25105 * 22 21 12 37 37 H 1.08004 * 119.95721 * 180.02562 * 23 22 21 38 38 H 1.08003 * 119.91878 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.95666 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.03999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 3.4512 1.2776 0.0005 5 6 4.0685 2.4896 0.0011 6 6 3.2858 3.6621 -0.0042 7 8 3.8217 4.7592 -0.0084 8 7 1.9412 3.5631 0.0009 9 6 1.1198 4.7762 0.0008 10 6 0.8388 5.1925 -1.4200 11 8 1.2807 4.5399 -2.3419 12 7 0.0963 6.2900 -1.6663 13 6 -0.3280 7.0782 -0.6274 14 1 -0.3185 6.6931 0.3815 15 6 -0.7698 8.3720 -0.8727 16 7 -0.4462 8.9752 -1.9946 17 14 -1.8238 9.2545 0.3920 18 1 -2.0456 8.3641 1.5596 19 1 -1.1325 10.4913 0.8363 20 1 -3.1319 9.6093 -0.2148 21 6 -0.2413 6.6248 -2.9809 22 6 -1.5389 6.4291 -3.4381 23 6 -1.8673 6.7553 -4.7390 24 6 -0.9068 7.2768 -5.5865 25 6 0.3854 7.4739 -5.1345 26 6 0.7210 7.1500 -3.8349 27 7 1.3276 2.3051 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 4.0375 0.3707 0.0005 32 1 5.1466 2.5530 0.0011 33 1 1.6528 5.5759 0.5151 34 1 0.1789 4.5780 0.5142 35 1 -0.6919 9.9030 -2.1347 36 1 -2.2894 6.0217 -2.7769 37 1 -2.8757 6.6038 -5.0949 38 1 -1.1664 7.5306 -6.6037 39 1 1.1330 7.8809 -5.7992 40 1 1.7302 7.3038 -3.4828 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347630708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:33 Heat of formation + Delta-G solvation = -5.670083 kcal Electronic energy + Delta-G solvation = -28127.905471 eV Core-core repulsion = 24103.140300 eV Total energy + Delta-G solvation = -4024.765172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25661 -41.13610 -40.14918 -39.00131 -37.63782 -36.66979 -35.18918 -33.64984 -32.27804 -31.62190 -31.02569 -29.44984 -28.14341 -26.90314 -25.33545 -24.22684 -23.33113 -23.17406 -21.26200 -20.01242 -19.71650 -19.00594 -18.48269 -17.71169 -17.31335 -17.21376 -16.83844 -16.54825 -16.36763 -16.27060 -15.86705 -15.73789 -15.10954 -15.05386 -14.77203 -14.51948 -14.38867 -14.15675 -13.67354 -13.45512 -13.32921 -13.18494 -12.89059 -12.81232 -12.74991 -12.41191 -12.23723 -12.17416 -12.07677 -11.98072 -11.30183 -11.20666 -10.90610 -10.62099 -10.11011 -9.61882 -9.53513 -9.30046 -8.19789 -6.01122 -0.62177 0.68956 0.74256 0.76928 0.85253 1.36381 1.46221 1.58562 1.80658 1.97290 2.21167 2.30959 2.82011 3.01594 3.08343 3.21616 3.66408 3.81291 4.07044 4.16241 4.21454 4.24071 4.31140 4.35194 4.38303 4.40865 4.43439 4.63125 4.71778 4.75633 4.85003 4.86204 4.98161 5.05022 5.29780 5.37962 5.60397 5.72967 5.78407 5.92484 5.96531 6.19370 6.47583 6.51590 6.82417 7.01515 7.38880 7.81464 8.68462 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.004179 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.754036 B = 6698.900530 C = 7311.264020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.290 6.290 3 C 0.284 3.716 4 C -0.055 4.055 5 C -0.146 4.146 6 C 0.478 3.522 7 O -0.585 6.585 8 N -0.376 5.376 9 C 0.140 3.860 10 C 0.442 3.558 11 O -0.623 6.623 12 N -0.414 5.414 13 C -0.382 4.382 14 H 0.118 0.882 15 C 0.008 3.992 16 N -0.867 5.867 17 Si 0.988 3.012 18 H -0.251 1.251 19 H -0.281 1.281 20 H -0.279 1.279 21 C 0.207 3.793 22 C -0.145 4.145 23 C -0.117 4.117 24 C -0.139 4.139 25 C -0.122 4.122 26 C -0.101 4.101 27 N -0.308 5.308 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.209 0.791 32 H 0.202 0.798 33 H 0.118 0.882 34 H 0.132 0.868 35 H 0.271 0.729 36 H 0.107 0.893 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.133 0.867 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 -13.866 3.504 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.192 6.192 3 C 0.069 3.931 4 C -0.078 4.078 5 C -0.173 4.173 6 C 0.274 3.726 7 O -0.466 6.466 8 N -0.196 5.196 9 C 0.015 3.985 10 C 0.232 3.768 11 O -0.510 6.510 12 N -0.129 5.129 13 C -0.507 4.507 14 H 0.136 0.864 15 C -0.198 4.198 16 N -0.502 5.502 17 Si 0.811 3.189 18 H -0.175 1.175 19 H -0.207 1.207 20 H -0.205 1.205 21 C 0.117 3.883 22 C -0.164 4.164 23 C -0.135 4.135 24 C -0.157 4.157 25 C -0.140 4.140 26 C -0.120 4.120 27 N -0.143 5.143 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.226 0.774 32 H 0.219 0.781 33 H 0.136 0.864 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.151 0.849 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.612 -13.378 2.956 13.715 hybrid contribution 0.177 1.120 0.516 1.246 sum -0.434 -12.258 3.472 12.748 Atomic orbital electron populations 1.23235 0.75557 1.05705 1.02272 1.86350 1.24359 1.20452 1.88059 1.20905 0.91703 0.85482 0.95039 1.21794 0.90718 1.01291 0.94023 1.22812 1.03568 0.89398 1.01570 1.18473 0.82264 0.92540 0.79298 1.90977 1.71068 1.30442 1.54135 1.48643 1.05562 1.02825 1.62618 1.21158 0.97637 0.84630 0.95065 1.20852 0.80819 0.83408 0.91701 1.90530 1.55566 1.57773 1.47106 1.41508 1.44423 1.21908 1.05081 1.20043 1.45844 0.95884 0.88935 0.86448 1.26138 0.97480 0.97028 0.99140 1.70106 1.41821 1.11772 1.26475 0.84956 0.77641 0.78013 0.78291 1.17469 1.20714 1.20491 1.17445 0.93149 0.93751 0.83998 1.21125 0.95146 1.03135 0.97040 1.21139 1.00307 0.99501 0.92593 1.21234 0.92540 1.01237 1.00660 1.21073 0.97875 1.00616 0.94481 1.20805 0.97545 0.98654 0.95042 1.74875 1.27122 0.90158 1.22125 0.84379 0.91843 0.93491 0.77375 0.78141 0.86433 0.84990 0.91846 0.87469 0.83638 0.83157 0.84940 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.39 113.37 1.18 1.65 16 2 O -0.29 -6.15 10.49 -91.46 -0.96 -7.11 16 3 C 0.28 7.43 7.61 85.43 0.65 8.08 16 4 C -0.06 -1.12 10.00 22.36 0.22 -0.89 16 5 C -0.15 -3.78 10.01 22.42 0.22 -3.56 16 6 C 0.48 18.76 7.50 84.91 0.64 19.39 16 7 O -0.58 -27.84 16.71 -5.64 -0.09 -27.93 16 8 N -0.38 -14.96 3.00 -476.07 -1.43 -16.39 16 9 C 0.14 6.02 4.60 85.63 0.39 6.42 16 10 C 0.44 23.10 7.62 87.66 0.67 23.77 16 11 O -0.62 -36.02 16.22 -3.05 -0.05 -36.07 16 12 N -0.41 -21.99 2.66 -458.88 -1.22 -23.21 16 13 C -0.38 -19.41 9.09 84.02 0.76 -18.64 16 14 H 0.12 5.41 6.56 -2.91 -0.02 5.39 16 15 C 0.01 0.41 5.15 84.91 0.44 0.85 16 16 N -0.87 -46.17 10.73 21.65 0.23 -45.94 16 17 Si 0.99 39.26 29.60 68.60 2.03 41.29 16 18 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 19 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 21 C 0.21 10.86 2.43 38.22 0.09 10.95 16 22 C -0.14 -6.78 9.84 22.41 0.22 -6.56 16 23 C -0.12 -4.54 10.04 22.25 0.22 -4.32 16 24 C -0.14 -5.13 10.04 22.30 0.22 -4.91 16 25 C -0.12 -5.16 10.04 22.25 0.22 -4.94 16 26 C -0.10 -5.21 8.68 22.41 0.19 -5.02 16 27 N -0.31 -10.44 10.42 -170.58 -1.78 -12.22 16 28 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 30 H 0.05 1.02 8.11 -2.38 -0.02 1.00 16 31 H 0.21 1.95 8.06 -2.91 -0.02 1.92 16 32 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 33 H 0.12 5.18 7.27 -2.38 -0.02 5.17 16 34 H 0.13 4.96 7.86 -2.39 -0.02 4.94 16 35 H 0.27 13.78 8.32 -92.71 -0.77 13.00 16 36 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.15 4.43 8.06 -2.91 -0.02 4.41 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 39 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 40 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -79.05 354.93 4.16 -74.89 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 1.07 Total: 30.42 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 6.35 Total: 22.28 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -4.19 Total: -97.76 kcal Atomic # 8 Polarization: -70.01 SS G_CDS: -1.10 Total: -71.12 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -79.05 4.16 -74.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347630708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.219 kcal (2) G-P(sol) polarization free energy of solvation -79.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds