Wall clock time and date at job start Tue Mar 31 2020 05:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86800 * 119.99878 * 2 1 4 4 H 1.48504 * 109.47012 * 269.99665 * 3 2 1 5 5 H 1.48502 * 109.47145 * 29.99965 * 3 2 1 6 6 H 1.48496 * 109.47075 * 149.99893 * 3 2 1 7 7 C 1.38952 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99921 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99951 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99948 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00353 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00244 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47733 * 179.97438 * 12 10 9 14 14 C 1.34769 * 120.00647 * 180.02562 * 13 12 10 15 15 O 1.21590 * 119.99749 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00411 * 179.97438 * 14 13 12 17 17 C 1.40035 * 120.00016 * 185.31264 * 16 14 13 18 18 C 1.38876 * 120.00304 * 213.31136 * 17 16 14 19 19 C 1.38035 * 119.99898 * 179.97438 * 18 17 16 20 20 C 1.38853 * 120.00138 * 0.02562 * 19 18 17 21 21 N 1.40275 * 120.00069 * 179.97438 * 20 19 18 22 22 C 1.35194 * 126.05588 * 179.97438 * 21 20 19 23 23 C 1.35342 * 107.71577 * 179.97438 * 22 21 20 24 24 C 1.39896 * 107.93543 * 359.97438 * 23 22 21 25 25 N 1.30902 * 108.23728 * 0.02562 * 24 23 22 26 26 C 1.38861 * 120.00503 * 0.25234 * 20 19 18 27 27 C 1.38026 * 120.00088 * 359.48945 * 26 20 19 28 28 H 0.96993 * 120.00035 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00110 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.47621 * 59.99356 * 12 10 9 31 31 H 1.09004 * 109.47146 * 299.99822 * 12 10 9 32 32 H 0.97006 * 119.99612 * 359.97438 * 13 12 10 33 33 H 0.96997 * 120.00175 * 5.31977 * 16 14 13 34 34 H 1.08003 * 120.00432 * 359.96098 * 18 17 16 35 35 H 1.08001 * 120.00440 * 180.02562 * 19 18 17 36 36 H 1.08000 * 126.14283 * 0.02562 * 22 21 20 37 37 H 1.08002 * 126.03335 * 180.26739 * 23 22 21 38 38 H 1.07997 * 125.88603 * 180.02562 * 24 23 22 39 39 H 1.07994 * 119.99521 * 179.72267 * 26 20 19 40 40 H 1.08003 * 120.00018 * 180.23099 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0011 12 6 5.5608 -2.3705 0.0022 13 7 6.0492 -3.7516 0.0026 14 6 7.3742 -3.9979 0.0042 15 8 8.1643 -3.0737 0.0048 16 7 7.8235 -5.2686 0.0050 17 6 9.1953 -5.5261 0.1189 18 6 9.7524 -6.6211 -0.5286 19 6 11.1046 -6.8746 -0.4167 20 6 11.9078 -6.0351 0.3437 21 7 13.2819 -6.2930 0.4578 22 6 14.1733 -5.5600 1.1620 23 6 15.3880 -6.1391 1.0178 24 6 15.2349 -7.2633 0.1994 25 7 13.9733 -7.3564 -0.1370 26 6 11.3498 -4.9435 0.9959 27 6 9.9986 -4.6868 0.8798 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3632 0.0007 30 1 5.9235 -1.8570 0.8926 31 1 5.9248 -1.8563 -0.8873 32 1 5.4188 -4.4890 0.0025 33 1 7.1967 -6.0047 -0.0733 34 1 9.1276 -7.2745 -1.1196 35 1 11.5381 -7.7258 -0.9206 36 1 13.9551 -4.6722 1.7370 37 1 16.3117 -5.7968 1.4607 38 1 16.0220 -7.9382 -0.1029 39 1 11.9739 -4.2933 1.5909 40 1 9.5654 -3.8357 1.3841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348750151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:22 Heat of formation + Delta-G solvation = 60.660878 kcal Electronic energy + Delta-G solvation = -25589.959835 eV Core-core repulsion = 21600.363740 eV Total energy + Delta-G solvation = -3989.596094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81363 -40.74464 -39.10942 -38.34348 -35.36548 -34.63973 -33.90242 -32.77805 -31.85917 -31.55199 -30.37909 -28.90006 -27.40294 -24.57010 -23.65745 -23.48377 -21.43023 -20.97324 -20.59070 -19.74040 -18.94709 -18.63741 -18.34773 -17.63964 -16.03384 -15.78106 -15.53820 -15.46137 -15.29318 -15.16221 -14.89934 -14.43114 -14.26136 -14.17784 -13.87596 -13.70649 -13.22061 -13.13570 -13.05943 -12.90530 -12.57747 -12.26506 -12.23510 -11.71984 -11.28991 -11.13824 -10.98090 -10.68986 -10.32731 -10.11370 -9.92001 -9.75727 -9.34314 -9.32118 -9.04665 -8.85188 -8.36469 -7.91471 -6.46031 -3.99052 0.51461 1.02450 1.83024 2.06545 2.43571 2.44798 2.94956 2.99445 3.00534 3.08917 3.48445 3.54891 3.98181 4.02055 4.14728 4.39125 4.48302 4.57275 4.63076 4.88256 4.98234 5.08564 5.08820 5.27678 5.33630 5.52530 5.55888 5.60751 5.69160 5.72928 5.73125 5.92965 5.97603 6.13248 6.29201 6.41285 6.54454 6.77363 6.88345 7.29225 7.38652 7.85143 7.95006 8.36033 8.43697 8.75858 9.23690 9.56291 10.65943 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.036639 B = 0.001780 C = 0.001711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.025643 B =15723.996555 C =16357.895516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.574 5.574 10 C 0.436 3.564 11 O -0.580 6.580 12 C 0.125 3.875 13 N -0.717 5.717 14 C 0.705 3.295 15 O -0.579 6.579 16 N -0.687 5.687 17 C 0.172 3.828 18 C -0.127 4.127 19 C -0.095 4.095 20 C 0.129 3.871 21 N -0.315 5.315 22 C 0.053 3.947 23 C -0.267 4.267 24 C 0.050 3.950 25 N -0.293 5.293 26 C -0.116 4.116 27 C -0.095 4.095 28 H 0.276 0.724 29 H 0.375 0.625 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.411 0.589 33 H 0.411 0.589 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.177 0.823 37 H 0.152 0.848 38 H 0.188 0.812 39 H 0.132 0.868 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.052 -10.732 2.122 29.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.139 0.861 9 N -0.211 5.211 10 C 0.222 3.778 11 O -0.464 6.464 12 C -0.004 4.004 13 N -0.374 5.374 14 C 0.405 3.595 15 O -0.457 6.457 16 N -0.334 5.334 17 C 0.075 3.925 18 C -0.149 4.149 19 C -0.115 4.115 20 C 0.037 3.963 21 N -0.090 5.090 22 C -0.090 4.090 23 C -0.296 4.296 24 C -0.136 4.136 25 N -0.112 5.112 26 C -0.137 4.137 27 C -0.116 4.116 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.247 0.753 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.205 0.795 39 H 0.150 0.850 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 26.066 -11.039 1.477 28.345 hybrid contribution 0.585 1.247 0.412 1.437 sum 26.650 -9.792 1.889 28.455 Atomic orbital electron populations 1.69615 1.05730 1.27898 1.47867 1.25072 0.95535 0.98199 0.97028 0.86670 0.79908 0.83730 0.79176 1.19355 1.19934 1.19208 1.19441 0.78907 0.96828 1.48848 0.86055 1.42104 1.07719 1.06111 1.65197 1.19591 0.87960 0.84938 0.85292 1.90541 1.69180 1.30881 1.55815 1.20872 0.93654 0.82328 1.03520 1.44761 1.04858 1.09852 1.77895 1.15801 0.82947 0.82700 0.78057 1.90932 1.54821 1.42713 1.57219 1.42622 1.06106 1.07664 1.77028 1.17547 0.82899 0.95986 0.96026 1.20771 0.94554 0.99023 1.00529 1.20603 0.92392 0.99637 0.98893 1.17523 0.79279 0.97613 1.01920 1.45890 1.05550 1.20505 1.37088 1.22662 0.89619 0.98719 0.98035 1.21587 0.98424 1.00386 1.09174 1.24049 0.94208 0.98126 0.97215 1.77442 1.06215 1.07251 1.20342 1.20659 0.95457 0.96456 1.01150 1.21038 0.92310 1.00377 0.97885 0.91318 0.79199 0.89584 0.89589 0.75131 0.75323 0.84571 0.84199 0.80544 0.82981 0.79511 0.84992 0.83358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.46 13.96 55.50 0.77 -23.69 16 2 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 18.54 27.74 -169.99 -4.71 13.83 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 7 C -0.31 -8.38 10.16 -14.93 -0.15 -8.54 16 8 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 9 N -0.57 -12.87 5.09 -10.96 -0.06 -12.92 16 10 C 0.44 9.14 7.85 -10.99 -0.09 9.05 16 11 O -0.58 -14.02 15.24 5.55 0.08 -13.94 16 12 C 0.12 2.01 6.15 -5.20 -0.03 1.97 16 13 N -0.72 -10.39 5.53 -66.42 -0.37 -10.76 16 14 C 0.70 9.88 8.30 -86.93 -0.72 9.16 16 15 O -0.58 -9.69 14.03 5.29 0.07 -9.61 16 16 N -0.69 -7.31 5.35 -14.20 -0.08 -7.39 16 17 C 0.17 1.86 6.28 -83.64 -0.53 1.33 16 18 C -0.13 -1.17 9.95 -39.42 -0.39 -1.56 16 19 C -0.09 -0.94 9.65 -39.43 -0.38 -1.32 16 20 C 0.13 1.36 6.69 -83.53 -0.56 0.80 16 21 N -0.31 -3.31 3.80 -10.67 -0.04 -3.35 16 22 C 0.05 0.43 10.80 -17.10 -0.18 0.25 16 23 C -0.27 -1.95 10.80 -39.99 -0.43 -2.38 16 24 C 0.05 0.41 12.03 -17.33 -0.21 0.20 16 25 N -0.29 -3.20 11.87 30.64 0.36 -2.84 16 26 C -0.12 -1.13 9.45 -39.43 -0.37 -1.50 16 27 C -0.09 -1.07 8.65 -39.42 -0.34 -1.41 16 28 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.41 5.77 7.46 -40.82 -0.30 5.47 16 33 H 0.41 3.19 8.83 -40.82 -0.36 2.83 16 34 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.14 1.33 7.69 -52.49 -0.40 0.93 16 36 H 0.18 0.89 7.04 -52.49 -0.37 0.53 16 37 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.97 6.73 -52.49 -0.35 0.62 16 40 H 0.15 1.84 6.41 -52.48 -0.34 1.50 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -34.24 351.69 -7.17 -41.41 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -4.03 Total: 16.79 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -4.48 Total: 7.17 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.60 Total: -60.94 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -4.71 Total: 13.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.24 -7.17 -41.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348750151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.073 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds