Wall clock time and date at job start Tue Mar 31 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47194 * 270.00385 * 3 2 1 5 5 H 1.48509 * 109.47211 * 29.99979 * 3 2 1 6 6 H 1.48501 * 109.47071 * 150.00065 * 3 2 1 7 7 C 1.37876 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99476 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46961 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47222 * 180.02562 * 10 9 7 12 12 S 1.81395 * 109.47436 * 180.02562 * 11 10 9 13 13 O 1.42095 * 110.54540 * 68.36925 * 12 11 10 14 14 O 1.42106 * 110.54097 * 291.62071 * 12 11 10 15 15 N 1.65596 * 104.45092 * 179.97438 * 12 11 10 16 16 C 1.46506 * 120.00040 * 64.99763 * 15 12 11 17 17 C 1.50702 * 109.47053 * 164.99802 * 16 15 12 18 18 N 1.31063 * 126.66406 * 270.17352 * 17 16 15 19 19 N 1.28838 * 107.99209 * 180.24353 * 18 17 16 20 20 N 1.28734 * 109.39911 * 359.75395 * 19 18 17 21 21 N 1.29019 * 108.80481 * 359.97438 * 20 19 18 22 22 C 1.46505 * 126.43541 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47212 * 90.02655 * 22 21 20 24 24 C 1.53000 * 117.50165 * 243.62151 * 23 22 21 25 25 C 1.52994 * 59.99907 * 252.50793 * 24 23 22 26 26 H 0.97003 * 119.99976 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46770 * 60.00861 * 9 7 2 28 28 H 1.08995 * 109.47467 * 300.00394 * 9 7 2 29 29 H 1.09000 * 109.47284 * 60.00428 * 10 9 7 30 30 H 1.09004 * 109.47192 * 300.00037 * 10 9 7 31 31 H 1.09000 * 109.47054 * 59.99782 * 11 10 9 32 32 H 1.09007 * 109.46910 * 300.00301 * 11 10 9 33 33 H 0.96998 * 120.00413 * 244.99677 * 15 12 11 34 34 H 1.08997 * 109.46911 * 45.00001 * 16 15 12 35 35 H 1.08996 * 109.46794 * 284.99698 * 16 15 12 36 36 H 1.09002 * 109.47068 * 210.02715 * 22 21 20 37 37 H 1.09001 * 109.47372 * 330.02803 * 22 21 20 38 38 H 1.09003 * 115.54795 * 29.32516 * 23 22 21 39 39 H 1.09001 * 117.49810 * 359.97438 * 24 23 22 40 40 H 1.08995 * 117.50134 * 145.01745 * 24 23 22 41 41 H 1.09004 * 117.49933 * 252.50827 * 25 24 23 42 42 H 1.09002 * 117.49788 * 107.49222 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 16 2.6591 -6.3658 -0.0004 13 8 3.3551 -6.4262 1.2370 14 8 3.3567 -6.4261 -1.2370 15 7 1.7088 -7.7219 -0.0005 16 6 0.8497 -8.0144 -1.1506 17 6 0.3834 -9.4456 -1.0783 18 7 0.9849 -10.4915 -1.5901 19 7 0.2736 -11.5313 -1.3204 20 7 -0.7635 -11.1765 -0.6453 21 7 -0.7298 -9.8984 -0.4723 22 6 -1.7210 -9.0908 0.2431 23 6 -1.3309 -8.9946 1.7194 24 6 -2.2842 -9.6134 2.7438 25 6 -2.1799 -8.0923 2.6171 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.8719 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.8540 -5.0445 -0.8914 32 1 0.8534 -5.0450 0.8886 33 1 1.7209 -8.3227 0.7609 34 1 1.4117 -7.8615 -2.0720 35 1 -0.0140 -7.3497 -1.1372 36 1 -1.7555 -8.0909 -0.1895 37 1 -2.7018 -9.5583 0.1562 38 1 -0.2625 -9.0502 1.9279 39 1 -3.1894 -10.0887 2.3660 40 1 -1.8430 -10.0764 3.6264 41 1 -1.6700 -7.5545 3.4165 42 1 -3.0163 -7.5671 2.1560 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351576948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:24 Heat of formation + Delta-G solvation = 59.788685 kcal Electronic energy + Delta-G solvation = -25836.208907 eV Core-core repulsion = 21982.018943 eV Total energy + Delta-G solvation = -3854.189964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.57788 -38.50177 -37.12689 -36.33527 -35.89408 -35.35898 -34.79167 -32.51442 -32.28003 -29.10177 -27.93175 -27.13252 -23.94130 -23.84273 -23.05212 -22.75667 -21.37596 -20.82103 -19.50614 -18.35843 -17.76611 -17.57745 -16.89293 -16.54617 -15.99902 -15.79386 -15.37547 -15.05975 -14.85804 -14.64637 -14.54150 -14.22548 -13.94246 -12.97229 -12.78068 -12.70146 -12.60239 -12.37764 -12.19813 -12.09079 -12.07116 -11.98011 -11.92036 -11.52240 -11.36962 -11.36105 -10.98878 -10.97006 -10.94478 -10.77610 -10.54711 -10.53783 -10.08641 -10.04728 -9.45605 -9.20357 -8.47834 -6.13302 -4.16300 0.16872 0.79676 1.47766 1.84083 2.65780 3.06656 3.25746 3.31803 3.32358 3.36172 3.70118 3.79315 3.87183 4.10328 4.23512 4.26981 4.35274 4.36400 4.41574 4.65476 4.71272 4.90929 4.97417 4.99845 5.05016 5.12980 5.22899 5.24237 5.30894 5.35756 5.42795 5.56312 5.72868 5.73761 6.14594 6.32067 6.48033 6.76209 7.47216 7.56579 7.84512 8.23945 8.24633 8.89839 9.49046 10.97820 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.002848 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.420169 B = 9830.025838 C =10832.554348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.032 3.968 10 C -0.107 4.107 11 C -0.607 4.607 12 S 2.599 3.401 13 O -0.954 6.954 14 O -0.952 6.952 15 N -1.122 6.122 16 C 0.201 3.799 17 C 0.174 3.826 18 N -0.281 5.281 19 N -0.076 5.076 20 N -0.085 5.085 21 N -0.294 5.294 22 C 0.140 3.860 23 C -0.188 4.188 24 C -0.169 4.169 25 C -0.158 4.158 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 -18.237 2.680 20.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.695 3.305 13 O -0.945 6.945 14 O -0.942 6.942 15 N -0.880 5.880 16 C 0.072 3.928 17 C -0.105 4.105 18 N -0.131 5.131 19 N -0.070 5.070 20 N -0.071 5.071 21 N -0.097 5.097 22 C 0.019 3.981 23 C -0.207 4.207 24 C -0.205 4.205 25 C -0.195 4.195 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.250 0.750 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.912 -19.440 2.210 20.750 hybrid contribution -0.584 1.714 0.643 1.921 sum -7.496 -17.727 2.852 19.457 Atomic orbital electron populations 1.69948 1.06086 1.26841 1.50567 1.25008 0.94890 0.99384 0.95013 0.86560 0.79904 0.83133 0.78250 1.20528 1.21168 1.19719 1.21247 0.93295 0.90862 1.51156 0.92341 1.19055 0.93475 0.90413 0.97708 1.21528 0.99468 0.91443 1.02205 1.30556 1.16282 1.15717 1.11358 1.05539 0.75571 0.74935 0.74478 1.93602 1.70141 1.85645 1.45070 1.93599 1.69733 1.85401 1.45460 1.55898 1.62295 1.43262 1.26546 1.19673 0.95743 0.85271 0.92129 1.25897 0.87293 0.99582 0.97735 1.75110 1.23256 0.94958 1.19799 1.78700 0.98159 1.19769 1.10342 1.78921 1.19281 0.93225 1.15641 1.48620 1.18779 1.06313 1.36000 1.21951 0.90323 0.95330 0.90513 1.22529 0.99211 1.08976 0.90022 1.23132 1.00693 0.96157 1.00561 1.23071 1.01693 0.93367 1.01405 0.92872 0.96090 0.96122 0.91454 0.91374 0.85320 0.85043 0.75020 0.85672 0.88639 0.86186 0.86531 0.86845 0.88060 0.88171 0.87478 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.13 9.11 -34.44 -0.31 -14.45 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.74 4.97 -27.88 -0.14 0.61 16 10 C -0.11 -1.94 5.16 -26.73 -0.14 -2.08 16 11 C -0.61 -7.50 6.07 37.16 0.23 -7.28 16 12 S 2.60 32.34 5.46 -107.50 -0.59 31.76 16 13 O -0.95 -15.04 18.08 -57.54 -1.04 -16.08 16 14 O -0.95 -14.96 17.50 -57.54 -1.01 -15.97 16 15 N -1.12 -9.77 5.88 -11.65 -0.07 -9.84 16 16 C 0.20 1.50 6.47 -5.19 -0.03 1.47 16 17 C 0.17 1.66 7.53 -155.44 -1.17 0.49 16 18 N -0.28 -3.63 12.36 32.70 0.40 -3.23 16 19 N -0.08 -1.02 13.43 60.35 0.81 -0.21 16 20 N -0.09 -0.96 13.29 60.35 0.80 -0.15 16 21 N -0.29 -2.43 3.35 -58.27 -0.19 -2.62 16 22 C 0.14 0.62 6.50 -4.04 -0.03 0.60 16 23 C -0.19 -0.92 6.01 -90.62 -0.54 -1.47 16 24 C -0.17 -0.77 10.18 -26.73 -0.27 -1.04 16 25 C -0.16 -0.67 10.25 -26.74 -0.27 -0.94 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.13 1.36 8.14 -51.92 -0.42 0.94 16 33 H 0.42 3.22 8.61 -34.47 -0.30 2.92 16 34 H 0.13 0.97 7.70 -51.93 -0.40 0.57 16 35 H 0.10 0.34 7.16 -51.93 -0.37 -0.03 16 36 H 0.12 0.25 7.13 -51.93 -0.37 -0.12 16 37 H 0.12 0.37 7.88 -51.93 -0.41 -0.04 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.38 8.03 -51.93 -0.42 -0.04 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -37.04 375.17 -8.33 -45.37 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.03 Total: -3.21 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.78 Total: -22.60 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 2.49 Total: -40.75 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -2.05 Total: -32.05 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 32.34 SS G_CDS: -0.59 Total: 31.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.04 -8.33 -45.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351576948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.155 kcal (2) G-P(sol) polarization free energy of solvation -37.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds