Wall clock time and date at job start Tue Mar 31 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.46712 * 2 1 4 4 C 1.46505 * 119.99806 * 290.36998 * 3 2 1 5 5 C 1.50697 * 109.47087 * 275.00595 * 4 3 2 6 6 H 1.08000 * 120.00252 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99805 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00162 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00002 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47161 * 90.00184 * 9 7 5 11 11 H 1.48507 * 109.47027 * 210.00450 * 9 7 5 12 12 H 1.48498 * 109.47354 * 329.99940 * 9 7 5 13 13 S 1.65593 * 120.00359 * 110.37535 * 3 2 1 14 14 O 1.42101 * 106.40279 * 130.41782 * 13 3 2 15 15 O 1.42106 * 106.40113 * 357.49877 * 13 3 2 16 16 N 1.65596 * 107.21966 * 243.96060 * 13 3 2 17 17 C 1.46498 * 120.00178 * 59.23055 * 16 13 3 18 18 C 1.50707 * 112.84874 * 52.45260 * 17 16 13 19 19 N 1.33240 * 125.52344 * 111.89912 * 18 17 16 20 20 C 1.30834 * 109.82537 * 179.85787 * 19 18 17 21 21 N 1.34426 * 108.07968 * 0.40339 * 20 19 18 22 22 H 0.96997 * 126.82246 * 179.78988 * 21 20 19 23 23 N 1.30707 * 125.52677 * 292.21215 * 18 17 16 24 24 C 1.53777 * 113.61740 * 281.25898 * 17 16 13 25 25 C 1.54044 * 86.98791 * 270.83572 * 24 17 16 26 26 C 1.53777 * 113.61975 * 183.64873 * 17 16 13 27 27 H 1.09008 * 109.46721 * 172.41472 * 1 2 3 28 28 H 1.08995 * 109.47331 * 292.41344 * 1 2 3 29 29 H 1.09001 * 109.47210 * 52.41878 * 1 2 3 30 30 H 1.08994 * 109.47452 * 239.99375 * 2 1 3 31 31 H 1.09004 * 109.47322 * 119.99236 * 2 1 3 32 32 H 1.09001 * 109.46462 * 35.00296 * 4 3 2 33 33 H 1.08995 * 109.47236 * 155.00158 * 4 3 2 34 34 H 0.97005 * 120.00497 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00313 * 239.23245 * 16 13 3 36 36 H 1.08000 * 125.95879 * 180.12402 * 20 19 18 37 37 H 1.09004 * 113.61478 * 25.42925 * 24 17 16 38 38 H 1.08997 * 113.61616 * 156.32748 * 24 17 16 39 39 H 1.08995 * 113.62306 * 220.01981 * 25 24 17 40 40 H 1.09002 * 113.69041 * 89.12114 * 25 24 17 41 41 H 1.08995 * 113.62212 * 203.66639 * 26 17 16 42 42 H 1.09000 * 113.61221 * 334.57264 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8460 2.2191 -1.1895 5 6 2.9818 1.9701 -2.1480 6 1 3.7549 1.2593 -1.8963 7 6 3.0339 2.6498 -3.3465 8 7 2.0928 3.5158 -3.6528 9 14 4.4422 2.3418 -4.5345 10 1 4.0768 1.2397 -5.4602 11 1 4.7100 3.5761 -5.3155 12 1 5.6595 1.9647 -3.7721 13 16 2.7650 1.9956 1.3443 14 8 3.9732 2.5932 0.8944 15 8 2.7238 0.9720 2.3292 16 7 1.8163 3.2287 1.9116 17 6 0.4302 2.9648 2.3056 18 6 0.3071 1.8274 3.2866 19 7 -0.0639 1.9412 4.5612 20 6 -0.0693 0.7623 5.1287 21 7 0.3139 -0.1435 4.2124 22 1 0.4068 -1.1000 4.3440 23 7 0.5525 0.5702 3.0265 24 6 -0.5390 2.8601 1.1163 25 6 -0.7356 4.3824 1.2471 26 6 -0.3418 4.2267 2.7255 27 1 -0.3633 -1.0188 -0.1357 28 1 -0.3634 0.3918 0.9500 29 1 -0.3634 0.6268 -0.8144 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 0.9011 1.9724 -1.6737 33 1 1.8410 3.2690 -0.8968 34 1 2.1296 3.9943 -4.4958 35 1 2.1784 4.1258 1.9830 36 1 -0.3312 0.5540 6.1555 37 1 -0.0575 2.5590 0.1858 38 1 -1.4377 2.2834 1.3349 39 1 -1.7668 4.7037 1.1014 40 1 -0.0237 4.9675 0.6649 41 1 -1.1867 4.0231 3.3833 42 1 0.2988 5.0282 3.0934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352079516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:20 Heat of formation + Delta-G solvation = 57.411080 kcal Electronic energy + Delta-G solvation = -28821.544373 eV Core-core repulsion = 24967.251308 eV Total energy + Delta-G solvation = -3854.293065 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01905 -39.10667 -36.40946 -35.95041 -35.01713 -32.61825 -32.50695 -32.23815 -30.97635 -29.70684 -26.64413 -25.73895 -25.47721 -23.12056 -22.49097 -21.39765 -20.92567 -19.45606 -18.59077 -18.04160 -17.19315 -16.62323 -16.22599 -16.01813 -15.45261 -15.23270 -14.83047 -14.68151 -14.29730 -14.08269 -13.56033 -13.18366 -12.83927 -12.48930 -12.20254 -12.11452 -11.95367 -11.62511 -11.47211 -11.44552 -11.28587 -11.19653 -10.97664 -10.94466 -10.77143 -10.66705 -10.46571 -10.25419 -10.17070 -9.98735 -9.84674 -9.80393 -9.61053 -9.37109 -9.23210 -8.40147 -7.93871 -6.02080 -4.04482 1.37271 1.80591 2.78331 2.93513 3.34616 3.40842 3.48123 3.60367 3.94146 4.32126 4.41871 4.49812 4.72003 4.81697 4.97070 5.12620 5.28357 5.32140 5.43715 5.68548 5.82218 5.89134 5.91833 5.98545 6.00387 6.10960 6.19807 6.29243 6.32047 6.36074 6.47797 6.50553 6.61721 6.80316 6.85262 7.12596 7.23940 7.29074 7.51089 7.73515 7.97857 8.19679 8.27761 8.99569 9.60438 11.06119 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018625 B = 0.005021 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.983333 B = 5574.933938 C = 5941.380643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.129 3.871 3 N -0.988 5.988 4 C 0.258 3.742 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.779 3.221 14 O -0.974 6.974 15 O -0.982 6.982 16 N -1.105 6.105 17 C 0.249 3.751 18 C 0.201 3.799 19 N -0.531 5.531 20 C 0.241 3.759 21 N -0.479 5.479 22 H 0.439 0.561 23 N -0.233 5.233 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.113 4.113 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.030 0.970 34 H 0.262 0.738 35 H 0.417 0.583 36 H 0.217 0.783 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -3.912 15.674 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.003 3.997 3 N -0.831 5.831 4 C 0.135 3.865 5 C -0.561 4.561 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.787 3.213 14 O -0.958 6.958 15 O -0.965 6.965 16 N -0.862 5.862 17 C 0.156 3.844 18 C -0.084 4.084 19 N -0.259 5.259 20 C -0.058 4.058 21 N -0.198 5.198 22 H 0.284 0.716 23 N -0.062 5.062 24 C -0.190 4.190 25 C -0.176 4.176 26 C -0.152 4.152 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.251 0.749 36 H 0.233 0.767 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.625 -4.153 15.352 18.092 hybrid contribution 0.693 -0.345 -0.444 0.893 sum -7.932 -4.498 14.907 17.475 Atomic orbital electron populations 1.22299 0.97172 1.00942 1.02289 1.21022 0.93871 0.82582 1.02265 1.57538 1.76418 1.20320 1.28809 1.18979 0.97759 0.88362 0.81351 1.21543 1.08814 1.23839 1.01921 0.92036 1.24915 0.96204 0.94991 0.97991 1.69913 1.33445 1.26556 1.23870 0.86547 0.82884 0.77562 0.80784 1.20731 1.21186 1.19721 1.02053 0.73267 0.72775 0.73191 1.93639 1.42629 1.77997 1.81514 1.93569 1.86694 1.57132 1.59106 1.55846 1.22049 1.26982 1.81311 1.18874 0.82529 0.91318 0.91718 1.24060 0.99727 0.92560 0.92004 1.70234 1.24365 1.24355 1.06933 1.25917 0.97256 0.84882 0.97749 1.48153 1.51738 1.11386 1.08537 0.71633 1.78241 1.18823 1.05355 1.03746 1.23774 0.98669 0.97428 0.99133 1.22895 1.02274 0.96484 0.95958 1.23075 0.99815 0.94891 0.97429 0.93243 0.91915 0.92230 0.91425 0.90045 0.94419 0.95202 0.92828 0.74906 0.76712 0.87731 0.89376 0.90856 0.89194 0.88271 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.78 37.16 0.33 -2.32 16 2 C 0.13 2.36 6.42 -4.04 -0.03 2.34 16 3 N -0.99 -20.61 2.02 -115.66 -0.23 -20.84 16 4 C 0.26 6.25 3.52 -5.19 -0.02 6.23 16 5 C -0.52 -14.57 9.38 -34.44 -0.32 -14.89 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 13 S 2.78 57.55 5.73 -107.50 -0.62 56.93 16 14 O -0.97 -24.29 17.92 -57.17 -1.02 -25.31 16 15 O -0.98 -20.41 12.42 -57.17 -0.71 -21.12 16 16 N -1.10 -18.69 5.71 0.26 0.00 -18.69 16 17 C 0.25 3.76 1.34 -132.16 -0.18 3.58 16 18 C 0.20 3.13 6.14 -156.86 -0.96 2.17 16 19 N -0.53 -7.35 10.67 -11.98 -0.13 -7.48 16 20 C 0.24 2.43 13.13 -90.65 -1.19 1.24 16 21 N -0.48 -5.34 7.45 29.53 0.22 -5.12 16 22 H 0.44 3.26 8.96 -182.34 -1.63 1.63 16 23 N -0.23 -3.62 7.68 32.42 0.25 -3.37 16 24 C -0.15 -2.19 5.54 -25.78 -0.14 -2.33 16 25 C -0.14 -1.75 8.00 -25.78 -0.21 -1.95 16 26 C -0.11 -1.38 7.13 -25.92 -0.18 -1.57 16 27 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.06 0.95 4.35 -51.93 -0.23 0.73 16 29 H 0.06 0.99 6.48 -51.93 -0.34 0.66 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.46 6.63 -51.93 -0.34 1.11 16 32 H 0.04 0.93 6.63 -51.93 -0.34 0.59 16 33 H 0.03 0.75 7.98 -51.93 -0.41 0.34 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.42 6.26 8.76 -34.47 -0.30 5.96 16 36 H 0.22 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.10 1.76 3.62 -51.93 -0.19 1.57 16 38 H 0.09 1.17 7.83 -51.93 -0.41 0.77 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.15 7.90 -51.93 -0.41 0.74 16 42 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -36.47 342.58 -11.05 -47.52 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.69 Total: 6.25 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -3.00 Total: -5.89 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: 0.85 Total: -80.52 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.73 Total: -46.44 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 57.55 SS G_CDS: -0.62 Total: 56.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.47 -11.05 -47.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352079516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.935 kcal (2) G-P(sol) polarization free energy of solvation -36.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds