Wall clock time and date at job start Tue Mar 31 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00008 * 2 1 4 4 H 1.48495 * 109.47550 * 89.99775 * 3 2 1 5 5 H 1.48511 * 109.47116 * 209.99923 * 3 2 1 6 6 H 1.48499 * 109.47060 * 329.99353 * 3 2 1 7 7 C 1.37883 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00098 * 5.23736 * 7 2 1 9 9 C 1.50704 * 119.99782 * 185.23007 * 7 2 1 10 10 O 1.42891 * 112.94610 * 52.32111 * 9 7 2 11 11 C 1.53945 * 113.73960 * 280.58000 * 9 7 2 12 12 N 1.47582 * 86.11797 * 222.05041 * 11 9 7 13 13 C 1.34776 * 134.49131 * 204.64457 * 12 11 9 14 14 O 1.21281 * 119.99710 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00331 * 359.97438 * 13 12 11 16 16 C 1.50699 * 109.47171 * 179.97438 * 15 13 12 17 17 C 1.38271 * 119.93731 * 269.72897 * 16 15 13 18 18 C 1.38123 * 120.06537 * 179.72901 * 17 16 15 19 19 C 1.38814 * 119.93330 * 0.56340 * 18 17 16 20 20 N 1.40264 * 120.06695 * 179.68585 * 19 18 17 21 21 C 1.35073 * 127.38343 * 359.72897 * 20 19 18 22 22 N 1.30747 * 107.26805 * 179.90005 * 21 20 19 23 23 N 1.28415 * 110.64667 * 0.38319 * 22 21 20 24 24 N 1.28946 * 110.20871 * 359.76238 * 23 22 21 25 25 C 1.38818 * 119.87423 * 359.71200 * 19 18 17 26 26 C 1.38128 * 119.92803 * 359.97438 * 25 19 18 27 27 C 1.47579 * 91.01427 * 24.64505 * 12 11 9 28 28 H 0.97008 * 119.99681 * 174.95530 * 1 2 3 29 29 H 0.96707 * 113.99791 * 304.09314 * 10 9 7 30 30 H 1.09003 * 113.77282 * 336.35677 * 11 9 7 31 31 H 1.09009 * 113.76274 * 107.75196 * 11 9 7 32 32 H 1.08998 * 109.46957 * 300.00592 * 15 13 12 33 33 H 1.09008 * 109.46933 * 60.00266 * 15 13 12 34 34 H 1.08007 * 119.96444 * 359.97438 * 17 16 15 35 35 H 1.07999 * 120.03262 * 180.29528 * 18 17 16 36 36 H 1.07996 * 126.36598 * 0.02562 * 21 20 19 37 37 H 1.07996 * 120.03705 * 180.02562 * 25 19 18 38 38 H 1.08005 * 119.96516 * 180.02562 * 26 25 19 39 39 H 1.08998 * 113.77112 * 221.06054 * 27 12 11 40 40 H 1.09000 * 113.87384 * 89.66748 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5468 1.4401 -0.7001 6 1 1.4466 2.6526 -0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4680 -2.1275 -0.0844 9 6 3.5069 -1.1967 0.1195 10 8 3.9785 -0.4412 1.2369 11 6 4.2336 -0.8768 -1.1994 12 7 5.1662 -1.9598 -0.8316 13 6 6.4458 -2.2496 -1.1399 14 8 6.9722 -3.2389 -0.6760 15 6 7.2223 -1.3451 -2.0618 16 6 8.6163 -1.8884 -2.2419 17 6 9.6274 -1.4920 -1.3862 18 6 10.9048 -1.9926 -1.5454 19 6 11.1757 -2.8856 -2.5731 20 7 12.4734 -3.3907 -2.7414 21 6 13.5660 -3.1080 -1.9994 22 7 14.5615 -3.7939 -2.4975 23 7 14.1744 -4.4846 -3.5085 24 7 12.9171 -4.2949 -3.7224 25 6 10.1599 -3.2775 -3.4342 26 6 8.8829 -2.7785 -3.2660 27 6 4.1349 -2.5980 0.0092 28 1 -0.4850 -0.8369 -0.0739 29 1 3.6757 0.4772 1.2467 30 1 3.6421 -1.0897 -2.0898 31 1 4.6935 0.1113 -1.2190 32 1 6.7227 -1.2971 -3.0293 33 1 7.2753 -0.3455 -1.6303 34 1 9.4172 -0.7931 -0.5899 35 1 11.6931 -1.6862 -0.8737 36 1 13.6090 -2.4412 -1.1510 37 1 10.3676 -3.9725 -4.2344 38 1 8.0921 -3.0833 -3.9354 39 1 4.5159 -2.9842 0.9546 40 1 3.5135 -3.3171 -0.5245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352210592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:14 Heat of formation + Delta-G solvation = 115.581970 kcal Electronic energy + Delta-G solvation = -26540.463885 eV Core-core repulsion = 22553.249348 eV Total energy + Delta-G solvation = -3987.214537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.54926 -40.35404 -39.60021 -37.79790 -35.66089 -34.51442 -32.74362 -32.71446 -32.25574 -31.47615 -29.40749 -27.63179 -25.82434 -25.15000 -24.39776 -24.28115 -22.14332 -21.87455 -20.19065 -19.06509 -18.74016 -18.10024 -16.96824 -16.79813 -16.62074 -16.30055 -16.02570 -15.87372 -15.16326 -15.00007 -14.53689 -14.29791 -13.96474 -13.72016 -13.61863 -13.51159 -13.22633 -12.85548 -12.74354 -12.45352 -12.24654 -11.99835 -11.92464 -11.70013 -11.49344 -11.47120 -11.37772 -10.91363 -10.88026 -10.50386 -10.07369 -9.66759 -9.57481 -9.47797 -9.12143 -8.87070 -8.65724 -8.17792 -6.80523 -4.57322 -0.04389 0.88546 1.25147 1.38351 1.89151 2.86739 2.97500 3.03105 3.07911 3.22397 3.42609 3.64029 3.84381 4.07828 4.30897 4.35550 4.44859 4.48918 4.58220 4.78092 4.88573 4.93558 4.97809 5.05049 5.11367 5.24711 5.36140 5.46076 5.54046 5.67492 5.79022 5.87247 5.92087 5.99222 6.11308 6.15477 6.20211 6.27944 6.43477 6.49096 7.38669 7.97387 8.01260 8.12862 8.35569 8.41469 8.49975 9.18646 10.55280 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.036028 B = 0.002185 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.995071 B =12812.918618 C =12986.062329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.033 3.967 3 Si 1.033 2.967 4 H -0.275 1.275 5 H -0.268 1.268 6 H -0.280 1.280 7 C -0.611 4.611 8 H 0.072 0.928 9 C 0.197 3.803 10 O -0.555 6.555 11 C 0.058 3.942 12 N -0.634 5.634 13 C 0.531 3.469 14 O -0.553 6.553 15 C -0.104 4.104 16 C -0.041 4.041 17 C -0.081 4.081 18 C -0.115 4.115 19 C 0.116 3.884 20 N -0.319 5.319 21 C 0.224 3.776 22 N -0.332 5.332 23 N -0.039 5.039 24 N -0.078 5.078 25 C -0.097 4.097 26 C -0.084 4.084 27 C 0.127 3.873 28 H 0.274 0.726 29 H 0.355 0.645 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.239 0.761 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.254 1.773 -5.518 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.174 4.174 3 Si 0.862 3.138 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.649 4.649 8 H 0.090 0.910 9 C 0.156 3.844 10 O -0.364 6.364 11 C -0.065 4.065 12 N -0.368 5.368 13 C 0.320 3.680 14 O -0.432 6.432 15 C -0.144 4.144 16 C -0.043 4.043 17 C -0.100 4.100 18 C -0.136 4.136 19 C 0.025 3.975 20 N -0.109 5.109 21 C -0.073 4.073 22 N -0.182 5.182 23 N -0.034 5.034 24 N -0.063 5.063 25 C -0.117 4.117 26 C -0.102 4.102 27 C 0.006 3.994 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.255 0.745 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.092 0.908 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.473 1.339 -6.045 20.433 hybrid contribution -0.814 -0.546 0.341 1.037 sum 18.659 0.793 -5.705 19.528 Atomic orbital electron populations 1.70764 1.06681 1.31347 1.43392 1.25839 0.96546 1.02502 0.92553 0.84273 0.75669 0.76116 0.77780 1.20241 1.19393 1.20566 1.22263 0.89533 0.96198 1.56920 0.91027 1.20502 0.93287 0.88566 0.82027 1.86458 1.76307 1.25725 1.47956 1.24788 0.89019 0.90026 1.02642 1.50174 1.09393 1.28919 1.48285 1.19924 0.81000 0.85642 0.81470 1.90691 1.68998 1.28763 1.54747 1.20687 0.91994 1.00193 1.01487 1.19588 0.94436 0.95780 0.94461 1.20900 0.91091 0.99528 0.98464 1.20770 0.98499 0.97429 0.96938 1.17554 0.80306 0.99834 0.99849 1.49094 1.09021 1.31029 1.21790 1.27434 0.81888 0.99301 0.98655 1.74484 1.26102 1.10102 1.07469 1.78075 1.03032 1.13883 1.08381 1.82669 1.07010 1.07454 1.09164 1.20892 0.91577 1.00218 0.98977 1.20979 0.95872 0.95537 0.97849 1.23263 0.85481 0.96917 0.93783 0.91516 0.79493 0.88808 0.90806 0.87659 0.87635 0.84294 0.84714 0.74494 0.84129 0.84488 0.90764 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 13.70 55.43 0.76 -23.53 16 2 C 0.03 0.84 5.47 -17.82 -0.10 0.74 16 3 Si 1.03 20.51 24.79 -169.99 -4.21 16.29 16 4 H -0.28 -5.22 6.95 56.52 0.39 -4.83 16 5 H -0.27 -4.52 4.86 56.52 0.27 -4.25 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.61 -14.92 9.04 -34.44 -0.31 -15.23 16 8 H 0.07 1.88 8.04 -52.49 -0.42 1.46 16 9 C 0.20 4.15 1.06 -90.84 -0.10 4.05 16 10 O -0.55 -11.95 13.42 -35.23 -0.47 -12.42 16 11 C 0.06 1.02 6.78 -2.97 -0.02 1.00 16 12 N -0.63 -11.22 3.61 -178.30 -0.64 -11.86 16 13 C 0.53 8.68 8.05 -10.99 -0.09 8.59 16 14 O -0.55 -10.85 16.76 5.56 0.09 -10.75 16 15 C -0.10 -1.16 5.58 -29.04 -0.16 -1.32 16 16 C -0.04 -0.43 4.37 -104.60 -0.46 -0.89 16 17 C -0.08 -0.74 9.69 -39.61 -0.38 -1.12 16 18 C -0.12 -0.91 9.49 -39.41 -0.37 -1.28 16 19 C 0.12 1.12 6.70 -83.57 -0.56 0.56 16 20 N -0.32 -3.24 3.85 -11.74 -0.05 -3.29 16 21 C 0.22 1.82 12.16 -90.14 -1.10 0.72 16 22 N -0.33 -3.77 12.15 29.64 0.36 -3.41 16 23 N -0.04 -0.51 13.39 60.35 0.81 0.30 16 24 N -0.08 -0.97 13.34 60.35 0.80 -0.17 16 25 C -0.10 -0.96 9.70 -39.41 -0.38 -1.34 16 26 C -0.08 -0.83 9.69 -39.61 -0.38 -1.22 16 27 C 0.13 2.49 8.23 -2.97 -0.02 2.46 16 28 H 0.27 7.48 8.72 -40.82 -0.36 7.13 16 29 H 0.35 7.02 4.23 45.56 0.19 7.21 16 30 H 0.09 1.57 8.09 -51.93 -0.42 1.15 16 31 H 0.07 1.17 6.54 -51.92 -0.34 0.83 16 32 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.11 1.00 8.08 -51.92 -0.42 0.58 16 34 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 0.59 6.88 -52.49 -0.36 0.22 16 36 H 0.24 0.62 7.19 -52.49 -0.38 0.24 16 37 H 0.14 1.32 7.77 -52.49 -0.41 0.91 16 38 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.09 1.69 8.09 -51.93 -0.42 1.27 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -32.58 345.91 -5.73 -38.31 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.95 Total: 9.61 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.44 Total: -4.28 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 2.04 Total: -41.96 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.38 Total: -23.18 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.21 Total: 16.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.58 -5.73 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352210592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.889 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds