Wall clock time and date at job start Tue Mar 31 2020 05:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35682 * 117.00031 * 2 1 4 4 N 1.32273 * 119.68111 * 359.97438 * 3 2 1 5 5 C 1.31933 * 121.64706 * 179.97438 * 4 3 2 6 6 C 1.38094 * 120.83495 * 0.02977 * 5 4 3 7 7 C 1.38782 * 119.28191 * 359.97194 * 6 5 4 8 8 C 1.38421 * 118.48918 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.44407 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47555 * 265.00212 * 9 8 7 11 11 N 1.46495 * 109.47296 * 180.02562 * 10 9 8 12 12 S 1.65602 * 120.00093 * 164.44567 * 11 10 9 13 13 O 1.42095 * 106.40395 * 176.31322 * 12 11 10 14 14 O 1.42101 * 106.40148 * 309.23245 * 12 11 10 15 15 N 1.65603 * 107.22154 * 62.77066 * 12 11 10 16 16 C 1.46499 * 119.99863 * 273.11661 * 15 12 11 17 17 C 1.46501 * 119.99909 * 93.11242 * 15 12 11 18 18 C 1.50698 * 109.46783 * 95.57387 * 17 15 12 19 19 H 1.07990 * 120.00330 * 4.71524 * 18 17 15 20 20 C 1.37881 * 119.99747 * 184.71560 * 18 17 15 21 21 N 1.31523 * 119.99820 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47451 * 60.00182 * 22 20 18 24 24 H 1.48501 * 109.47007 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47222 * 299.99659 * 22 20 18 26 26 H 1.08996 * 109.47131 * 300.00097 * 1 2 3 27 27 H 1.09000 * 109.47233 * 59.99966 * 1 2 3 28 28 H 1.09000 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.08007 * 119.58323 * 180.02562 * 5 4 3 30 30 H 1.07992 * 120.35779 * 179.97438 * 6 5 4 31 31 H 1.08000 * 120.75379 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47017 * 25.00428 * 9 8 7 33 33 H 1.09007 * 109.47074 * 144.99926 * 9 8 7 34 34 H 1.09002 * 109.47135 * 300.00144 * 10 9 8 35 35 H 1.09000 * 109.47512 * 59.99812 * 10 9 8 36 36 H 0.96993 * 120.00235 * 344.44171 * 11 10 9 37 37 H 1.08999 * 109.47245 * 89.99908 * 16 15 12 38 38 H 1.09005 * 109.46764 * 209.99482 * 16 15 12 39 39 H 1.09001 * 109.47276 * 329.99476 * 16 15 12 40 40 H 1.08998 * 109.47017 * 215.57548 * 17 15 12 41 41 H 1.09000 * 109.46885 * 335.57191 * 17 15 12 42 42 H 0.96998 * 119.99660 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 -0.0005 5 6 1.8767 3.5096 0.0000 6 6 3.2506 3.6492 0.0004 7 6 4.0483 2.5135 0.0010 8 6 3.4322 1.2740 0.0005 9 6 4.2558 0.0119 0.0004 10 6 4.4298 -0.4836 -1.4366 11 7 5.2298 -1.7108 -1.4365 12 16 5.2610 -2.6790 -2.7795 13 8 6.1804 -3.7254 -2.4987 14 8 3.9058 -2.9108 -3.1386 15 7 5.9251 -1.7906 -4.0092 16 6 5.0731 -0.9311 -4.8348 17 6 7.3646 -1.8641 -4.2714 18 6 7.6261 -2.8739 -5.3589 19 1 6.7988 -3.3517 -5.8625 20 6 8.9217 -3.1879 -5.7110 21 7 9.9292 -2.6064 -5.0974 22 14 9.2459 -4.4391 -7.0596 23 1 8.6332 -3.9697 -8.3282 24 1 10.7106 -4.5978 -7.2458 25 1 8.6519 -5.7450 -6.6764 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.2513 4.3902 -0.0001 30 1 3.6994 4.6314 0.0004 31 1 5.1252 2.5950 0.0017 32 1 5.2342 0.2166 0.4352 33 1 3.7491 -0.7526 0.5896 34 1 3.4514 -0.6882 -1.8713 35 1 4.9364 0.2808 -2.0257 36 1 5.7414 -1.9562 -0.6498 37 1 5.0199 0.0627 -4.3901 38 1 5.4937 -0.8583 -5.8377 39 1 4.0718 -1.3581 -4.8908 40 1 7.7264 -0.8862 -4.5889 41 1 7.8844 -2.1662 -3.3622 42 1 10.8406 -2.8270 -5.3454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352593857.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:08 Heat of formation + Delta-G solvation = -78.082578 kcal Electronic energy + Delta-G solvation = -26269.863342 eV Core-core repulsion = 22377.402080 eV Total energy + Delta-G solvation = -3892.461262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96093 -38.07183 -36.63792 -36.10859 -35.44657 -35.10215 -33.23355 -32.41260 -31.46432 -28.44623 -27.74841 -27.40613 -25.05089 -23.97737 -23.21501 -22.27321 -21.75537 -18.90532 -18.54295 -17.37292 -17.25908 -16.65701 -16.46181 -16.24671 -15.87604 -15.62640 -14.95930 -14.73969 -14.52391 -14.26551 -14.15599 -13.67514 -13.40606 -13.29033 -13.23563 -12.59376 -12.30977 -12.23154 -12.12822 -11.95485 -11.58697 -11.56502 -11.41391 -11.39398 -11.16544 -11.13027 -11.02755 -10.68619 -10.46584 -10.02370 -10.00547 -9.88968 -9.75946 -9.27242 -8.64374 -8.42314 -8.04110 -6.04821 -4.08889 0.83195 1.02356 1.29926 2.89428 3.34943 3.38453 3.42953 3.46597 3.58160 4.03144 4.18958 4.46363 4.53751 4.65241 4.70613 4.91880 4.97385 5.04427 5.10857 5.13501 5.16380 5.27941 5.30583 5.43781 5.51675 5.64594 5.65897 5.78267 5.85526 6.00088 6.07116 6.12498 6.19112 6.33392 6.58013 7.00885 7.13493 7.29472 7.44217 7.57900 7.65479 7.92885 8.22606 8.93422 9.56307 11.03832 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.002937 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.927019 B = 9532.294830 C =10065.663922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.301 6.301 3 C 0.325 3.675 4 N -0.540 5.540 5 C 0.133 3.867 6 C -0.209 4.209 7 C -0.037 4.037 8 C -0.150 4.150 9 C -0.075 4.075 10 C 0.129 3.871 11 N -1.134 6.134 12 S 2.782 3.218 13 O -0.964 6.964 14 O -0.997 6.997 15 N -0.996 5.996 16 C 0.094 3.906 17 C 0.257 3.743 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.063 3.937 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.412 0.588 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.849 13.678 12.583 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.146 3.854 4 N -0.264 5.264 5 C -0.022 4.022 6 C -0.230 4.230 7 C -0.063 4.063 8 C -0.154 4.154 9 C -0.114 4.114 10 C 0.002 3.998 11 N -0.893 5.893 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.981 6.981 15 N -0.839 5.839 16 C -0.053 4.053 17 C 0.135 3.865 18 C -0.571 4.571 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.175 0.825 30 H 0.155 0.845 31 H 0.161 0.839 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.245 0.755 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.884 12.480 12.351 23.677 hybrid contribution 1.294 -0.011 -0.404 1.355 sum -14.590 12.469 11.947 22.607 Atomic orbital electron populations 1.22879 0.77180 1.03186 1.02264 1.86302 1.22881 1.24157 1.87357 1.19715 0.88926 0.84861 0.91947 1.67340 1.40877 0.98838 1.19332 1.22399 0.92985 0.93602 0.93219 1.21987 0.94884 0.99837 1.06260 1.21434 1.00884 0.90674 0.93287 1.19806 0.91151 0.96655 1.07763 1.20582 0.99507 0.93994 0.97296 1.21123 0.95516 0.86196 0.96994 1.56232 1.61714 1.38350 1.33022 1.01927 0.73027 0.73356 0.72725 1.93640 1.64144 1.52629 1.84392 1.93524 1.36817 1.84503 1.83217 1.57599 1.18961 1.61611 1.45695 1.21371 0.94252 0.92665 0.96997 1.19056 0.72393 0.97532 0.97516 1.21473 0.92310 1.23942 1.19375 0.92193 1.24937 0.95938 0.96281 0.96820 1.69911 0.98914 1.42928 1.41693 0.86570 0.77025 0.82013 0.81921 1.20172 1.21158 1.19985 0.92469 0.92207 0.88454 0.82487 0.84465 0.83871 0.89947 0.89493 0.90532 0.91938 0.75527 0.94447 0.90386 0.91634 0.95051 0.93946 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.38 101.05 1.05 1.41 16 2 O -0.30 -3.58 9.63 -18.75 -0.18 -3.76 16 3 C 0.32 3.77 7.47 -17.13 -0.13 3.65 16 4 N -0.54 -5.88 9.22 -13.33 -0.12 -6.00 16 5 C 0.13 1.11 11.18 -17.56 -0.20 0.91 16 6 C -0.21 -1.55 10.11 -39.43 -0.40 -1.95 16 7 C -0.04 -0.31 9.83 -39.31 -0.39 -0.70 16 8 C -0.15 -1.56 5.17 -104.32 -0.54 -2.10 16 9 C -0.07 -0.77 5.23 -27.89 -0.15 -0.91 16 10 C 0.13 1.64 6.24 -4.05 -0.03 1.62 16 11 N -1.13 -16.90 6.05 -10.62 -0.06 -16.97 16 12 S 2.78 56.21 6.09 -107.50 -0.65 55.55 16 13 O -0.96 -23.42 16.99 -57.17 -0.97 -24.39 16 14 O -1.00 -21.40 16.34 -57.17 -0.93 -22.34 16 15 N -1.00 -20.89 3.23 -123.05 -0.40 -21.28 16 16 C 0.09 1.63 10.69 59.85 0.64 2.27 16 17 C 0.26 6.49 5.10 -5.19 -0.03 6.46 16 18 C -0.53 -15.08 9.38 -34.44 -0.32 -15.40 16 19 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.06 1.79 5.46 -17.81 -0.10 1.69 16 21 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 22 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 27 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 30 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 33 H 0.09 0.92 7.71 -51.92 -0.40 0.52 16 34 H 0.08 1.07 7.79 -51.93 -0.40 0.66 16 35 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 36 H 0.41 5.26 8.66 -34.47 -0.30 4.96 16 37 H 0.04 0.53 8.05 -51.93 -0.42 0.12 16 38 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 39 H 0.06 1.09 7.05 -51.93 -0.37 0.72 16 40 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 41 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -36.07 371.62 -8.62 -44.69 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.03 Total: 0.53 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -0.58 Total: -3.05 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: 0.15 Total: -69.81 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -2.09 Total: -50.48 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 56.21 SS G_CDS: -0.65 Total: 55.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.07 -8.62 -44.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352593857.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.391 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds