Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39955 * 125.83759 * 2 1 4 4 C 1.30149 * 109.73925 * 180.02562 * 3 2 1 5 5 C 1.41481 * 108.43769 * 359.97438 * 4 3 2 6 6 C 1.36685 * 125.84023 * 179.97438 * 2 1 3 7 7 N 1.33074 * 133.15009 * 359.97438 * 6 2 1 8 8 C 1.31204 * 122.04001 * 180.02562 * 7 6 2 9 9 C 1.40083 * 121.35689 * 359.97105 * 8 7 6 10 10 C 1.47328 * 120.44571 * 180.02562 * 9 8 7 11 11 O 1.21616 * 120.00321 * 235.05786 * 10 9 8 12 12 N 1.34779 * 119.99871 * 54.77698 * 10 9 8 13 13 C 1.46499 * 119.99995 * 185.69517 * 12 10 9 14 14 C 1.50691 * 109.47338 * 89.99772 * 13 12 10 15 15 H 1.08003 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99504 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00561 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46966 * 60.00480 * 18 16 14 20 20 H 1.48504 * 109.47509 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47279 * 300.00782 * 18 16 14 22 22 C 1.46506 * 119.99777 * 5.69069 * 12 10 9 23 23 C 1.53001 * 109.46762 * 94.96521 * 22 12 10 24 24 C 1.47202 * 109.46602 * 180.02562 * 23 22 12 25 25 N 6.89059 * 106.08351 * 232.15044 * 2 1 3 26 26 C 1.40329 * 119.10771 * 0.30275 * 9 8 7 27 27 O 1.35342 * 121.07012 * 179.70040 * 26 9 8 28 28 H 1.09003 * 109.47237 * 270.00352 * 1 2 3 29 29 H 1.09006 * 109.46939 * 29.99583 * 1 2 3 30 30 H 1.09000 * 109.47263 * 149.99730 * 1 2 3 31 31 H 1.07999 * 125.78561 * 179.97438 * 4 3 2 32 32 H 1.08002 * 119.32036 * 180.02562 * 8 7 6 33 33 H 1.08999 * 109.46786 * 209.99816 * 13 12 10 34 34 H 1.09002 * 109.47007 * 329.99878 * 13 12 10 35 35 H 0.96998 * 119.99805 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.46887 * 214.96277 * 22 12 10 37 37 H 1.09002 * 109.47282 * 334.95929 * 22 12 10 38 38 H 1.08998 * 109.46786 * 299.99462 * 23 22 12 39 39 H 1.08999 * 109.47234 * 59.99826 * 23 22 12 40 40 H 0.96707 * 113.99518 * 89.99927 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2844 1.1346 0.0000 4 6 3.5348 0.7737 -0.0005 5 6 3.5926 -0.6399 -0.0003 6 6 2.2653 -1.1080 0.0005 7 7 2.0112 -2.4143 0.0015 8 6 2.9700 -3.3099 0.0023 9 6 4.3192 -2.9334 0.0015 10 6 5.3797 -3.9561 0.0018 11 8 6.2365 -3.9434 0.8648 12 7 5.3971 -4.9091 -0.9510 13 6 6.3751 -5.9976 -0.8806 14 6 5.7929 -7.1461 -0.0976 15 1 4.7942 -7.0728 0.3067 16 6 6.5350 -8.2910 0.1017 17 7 7.7511 -8.3804 -0.3912 18 14 5.8137 -9.7143 1.0727 19 1 4.5813 -10.1983 0.4002 20 1 6.8051 -10.8177 1.1440 21 1 5.4815 -9.2585 2.4464 22 6 4.4378 -4.8566 -2.0571 23 6 5.0810 -4.1586 -3.2571 24 6 4.1170 -4.1053 -4.3683 25 7 3.3739 -4.0625 -5.2280 26 6 4.6472 -1.5690 0.0063 27 8 5.9375 -1.1607 0.0118 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.3845 1.4403 -0.0011 32 1 2.7136 -4.3591 0.0027 33 1 6.6196 -6.3321 -1.8887 34 1 7.2792 -5.6422 -0.3863 35 1 8.2733 -9.1857 -0.2507 36 1 4.1506 -5.8701 -2.3373 37 1 3.5533 -4.3014 -1.7449 38 1 5.3683 -3.1452 -2.9769 39 1 5.9655 -4.7138 -3.5693 40 1 6.3155 -1.0397 -0.8701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355635672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = 69.716289 kcal Electronic energy + Delta-G solvation = -27750.715143 eV Core-core repulsion = 23761.511721 eV Total energy + Delta-G solvation = -3989.203422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04378 -39.82399 -38.16123 -37.36014 -36.84511 -35.26412 -33.73656 -32.94550 -31.15810 -30.89186 -30.37815 -27.63255 -26.93287 -24.43781 -24.24330 -23.67629 -22.36121 -21.25242 -19.26096 -18.80890 -18.06051 -17.40924 -17.25210 -16.49951 -16.31164 -16.10749 -15.82462 -15.34920 -14.79547 -14.67773 -14.41631 -14.23246 -14.06842 -13.98588 -13.63491 -13.43751 -12.95247 -12.90604 -12.59738 -12.49709 -12.35758 -12.15885 -11.80066 -11.52745 -11.32280 -11.08798 -11.02027 -10.91565 -10.66727 -10.40602 -10.22900 -9.98782 -9.76828 -9.20969 -9.07118 -8.51910 -8.45564 -7.91686 -6.12465 -4.17688 0.42059 0.82549 1.87385 2.19943 2.67727 2.77637 3.08109 3.28875 3.34059 3.36439 3.43254 3.55117 3.70979 3.90603 4.04528 4.23252 4.38689 4.54828 4.61793 4.89456 4.94702 4.96797 5.02874 5.11574 5.15137 5.21596 5.23808 5.30497 5.37361 5.69114 5.76779 5.87597 5.99975 6.11450 6.51405 6.86693 7.12313 7.28805 7.32422 7.37012 7.54220 7.64414 7.83073 8.11366 8.14386 8.74023 8.89883 9.48235 10.95552 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.003693 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.942260 B = 7579.695680 C = 8124.032880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.389 5.389 3 N -0.248 5.248 4 C 0.099 3.901 5 C -0.260 4.260 6 C 0.332 3.668 7 N -0.510 5.510 8 C 0.219 3.781 9 C -0.243 4.243 10 C 0.564 3.436 11 O -0.509 6.509 12 N -0.591 5.591 13 C 0.245 3.755 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.111 3.889 23 C -0.047 4.047 24 C 0.215 3.785 25 N -0.443 5.443 26 C 0.277 3.723 27 O -0.470 6.470 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.200 0.800 32 H 0.180 0.820 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 15.924 -3.341 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.179 5.179 3 N -0.061 5.061 4 C -0.097 4.097 5 C -0.271 4.271 6 C 0.093 3.907 7 N -0.225 5.225 8 C 0.048 3.952 9 C -0.251 4.251 10 C 0.349 3.651 11 O -0.384 6.384 12 N -0.322 5.322 13 C 0.127 3.873 14 C -0.572 4.572 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.016 4.016 23 C -0.088 4.088 24 C -0.103 4.103 25 N -0.121 5.121 26 C 0.220 3.780 27 O -0.282 6.282 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.216 0.784 32 H 0.196 0.804 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -11.433 16.683 -3.568 20.537 hybrid contribution 1.297 -1.278 0.411 1.867 sum -10.135 15.405 -3.158 18.709 Atomic orbital electron populations 1.21846 0.73027 1.04568 1.03446 1.48232 1.06359 1.00289 1.62997 1.76859 1.02092 1.07526 1.19651 1.23818 0.95116 0.92966 0.97841 1.19749 0.94004 0.95267 1.18074 1.19032 0.87830 0.88204 0.95668 1.66714 1.37172 0.98456 1.20185 1.22888 0.85895 0.98716 0.87671 1.21380 0.96508 0.94170 1.13081 1.17526 0.84231 0.80726 0.82635 1.90834 1.37821 1.73378 1.36362 1.48168 1.35388 1.26392 1.22274 1.19396 0.87515 0.82471 0.97927 1.21374 1.01493 0.99469 1.34859 0.92275 1.24901 0.94747 0.98545 0.95616 1.69905 1.09509 1.28574 1.45089 0.86582 0.78749 0.81535 0.80724 1.20182 1.21209 1.20131 1.21483 0.91869 1.02434 0.85766 1.19825 0.95502 1.04291 0.89187 1.29140 0.94022 0.92923 0.94185 1.81257 1.10427 1.09113 1.11266 1.18078 0.83236 0.88440 0.88269 1.84677 1.21618 1.88364 1.33504 0.90905 0.89330 0.88945 0.78357 0.80360 0.94487 0.93232 0.92550 0.88482 0.90564 0.88048 0.86225 0.73824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.89 11.47 59.85 0.69 1.57 16 2 N -0.39 -4.58 4.05 -67.22 -0.27 -4.85 16 3 N -0.25 -2.88 12.44 30.85 0.38 -2.50 16 4 C 0.10 1.02 12.06 -17.03 -0.21 0.82 16 5 C -0.26 -3.22 6.14 -106.85 -0.66 -3.88 16 6 C 0.33 4.39 7.98 -156.04 -1.24 3.15 16 7 N -0.51 -6.85 10.36 -12.09 -0.13 -6.97 16 8 C 0.22 2.90 8.62 -17.13 -0.15 2.75 16 9 C -0.24 -3.50 4.92 -104.72 -0.52 -4.01 16 10 C 0.56 10.12 6.83 -12.56 -0.09 10.04 16 11 O -0.51 -11.68 16.40 4.77 0.08 -11.60 16 12 N -0.59 -10.11 2.46 -176.36 -0.43 -10.54 16 13 C 0.25 5.47 5.22 -5.20 -0.03 5.45 16 14 C -0.53 -13.56 9.39 -34.44 -0.32 -13.88 16 15 H 0.06 1.48 7.81 -52.48 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 18 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.11 1.40 5.18 -4.04 -0.02 1.38 16 23 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 24 C 0.22 2.58 15.44 -20.72 -0.32 2.26 16 25 N -0.44 -6.50 18.55 42.20 0.78 -5.72 16 26 C 0.28 3.58 6.81 -37.93 -0.26 3.33 16 27 O -0.47 -5.49 12.86 -18.21 -0.23 -5.73 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.18 2.12 7.55 -52.49 -0.40 1.72 16 33 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.05 1.28 7.35 -51.93 -0.38 0.90 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 37 H 0.08 0.86 4.41 -51.93 -0.23 0.63 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.40 2.52 9.06 45.56 0.41 2.93 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -35.60 362.25 -5.56 -41.16 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.52 Total: -0.28 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -3.39 Total: 9.93 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 1.07 Total: -54.52 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.16 Total: -17.33 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.60 -5.56 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355635672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.872 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds