Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30451 * 125.98455 * 2 1 4 4 N 1.39940 * 108.89389 * 180.02562 * 3 2 1 5 5 C 1.46491 * 125.75594 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47176 * 90.02607 * 5 4 3 7 7 F 1.39903 * 109.46816 * 64.99979 * 6 5 4 8 8 F 1.39898 * 109.47430 * 185.00173 * 6 5 4 9 9 C 1.34268 * 108.48973 * 359.75448 * 4 3 2 10 10 C 1.50697 * 126.29032 * 180.24542 * 9 4 3 11 11 C 1.38037 * 107.41453 * 0.39212 * 9 4 3 12 12 C 1.47435 * 126.41187 * 179.87271 * 11 9 4 13 13 O 1.21603 * 120.00113 * 269.71083 * 12 11 9 14 14 N 1.34781 * 120.00051 * 89.71241 * 12 11 9 15 15 C 1.47571 * 134.49423 * 180.02562 * 14 12 11 16 16 C 1.53946 * 86.11996 * 155.35733 * 15 14 12 17 17 O 1.42904 * 113.73883 * 269.15369 * 16 15 14 18 18 C 1.50701 * 113.74318 * 137.95533 * 16 15 14 19 19 H 1.08002 * 119.99761 * 1.91855 * 18 16 15 20 20 C 1.37871 * 119.99694 * 182.20418 * 18 16 15 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 16 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 16 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47301 * 119.99669 * 22 20 18 25 25 H 1.48498 * 109.47430 * 239.99516 * 22 20 18 26 26 C 1.47807 * 134.45550 * 359.86564 * 14 12 11 27 27 H 1.09008 * 109.46905 * 269.99793 * 1 2 3 28 28 H 1.08997 * 109.47573 * 29.99618 * 1 2 3 29 29 H 1.08999 * 109.47638 * 149.99753 * 1 2 3 30 30 H 1.08993 * 109.47736 * 210.02985 * 5 4 3 31 31 H 1.09002 * 109.47062 * 330.03189 * 5 4 3 32 32 H 1.09004 * 109.47146 * 305.00791 * 6 5 4 33 33 H 1.09005 * 109.46740 * 270.17726 * 10 9 4 34 34 H 1.09006 * 109.47134 * 30.17275 * 10 9 4 35 35 H 1.08995 * 109.47169 * 150.17522 * 10 9 4 36 36 H 1.09004 * 113.77444 * 41.05348 * 15 14 12 37 37 H 1.09000 * 113.77320 * 269.65884 * 15 14 12 38 38 H 0.96703 * 113.99734 * 178.06891 * 17 16 15 39 39 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 40 40 H 1.08997 * 113.77160 * 90.37973 * 26 14 12 41 41 H 1.09008 * 113.84085 * 318.92046 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6110 0.6443 -0.0006 5 6 4.7786 1.5291 -0.0013 6 6 5.1862 1.8368 1.4409 7 9 5.6137 0.6603 2.0658 8 9 6.2280 2.7705 1.4421 9 6 3.6438 -0.6980 0.0045 10 6 4.8799 -1.5599 0.0110 11 6 2.3372 -1.1431 -0.0007 12 6 1.8915 -2.5485 -0.0005 13 8 1.7074 -3.1281 -1.0535 14 7 1.6881 -3.1908 1.1668 15 6 1.2567 -4.5528 1.5363 16 6 2.0033 -4.3168 2.8618 17 8 3.3693 -4.7355 2.8351 18 6 1.2597 -4.8153 4.0741 19 1 0.3091 -5.3144 3.9571 20 6 1.7902 -4.6290 5.3330 21 7 2.9478 -4.0213 5.4755 22 14 0.8648 -5.2400 6.8362 23 1 -0.4031 -5.8841 6.4090 24 1 1.7011 -6.2273 7.5649 25 1 0.5605 -4.0937 7.7300 26 6 1.8106 -2.8139 2.5908 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8899 -0.5138 30 1 5.6053 1.0394 -0.5159 31 1 4.5302 2.4580 -0.5147 32 1 4.3318 2.2450 1.9808 33 1 5.1824 -1.7690 -1.0151 34 1 5.6848 -1.0371 0.5277 35 1 4.6666 -2.4971 0.5250 36 1 1.6959 -5.3358 0.9181 37 1 0.1778 -4.6558 1.6521 38 1 3.8500 -4.5620 3.6561 39 1 3.3208 -3.8899 6.3611 40 1 0.8949 -2.4045 3.0172 41 1 2.6913 -2.2111 2.8128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356557978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -78.340228 kcal Electronic energy + Delta-G solvation = -29257.761717 eV Core-core repulsion = 24811.448896 eV Total energy + Delta-G solvation = -4446.312821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.31012 -47.30955 -41.43509 -39.21132 -37.12745 -34.74588 -33.88829 -32.32964 -32.21547 -30.50206 -28.86815 -27.35148 -26.95015 -25.29059 -25.20177 -23.60353 -21.63662 -19.76476 -19.57905 -18.31465 -17.94613 -17.66578 -17.44315 -17.12287 -16.33003 -15.98872 -15.36478 -14.94500 -14.75847 -14.48329 -14.28742 -14.10042 -13.80550 -13.68440 -13.54168 -13.29383 -13.18145 -12.89312 -12.76068 -12.52091 -12.50079 -12.32763 -12.18722 -11.95532 -11.82610 -11.56703 -11.39459 -11.09689 -11.02301 -10.72336 -10.50538 -10.28171 -9.68659 -9.22309 -9.20877 -8.76550 -8.45022 -8.38511 -7.81411 -6.38532 -4.48579 1.60665 2.04955 2.55060 3.13594 3.14555 3.23679 3.27281 3.34181 3.69920 3.86960 3.94539 4.19461 4.32424 4.53230 4.57572 4.82906 4.85837 4.94842 5.04168 5.24058 5.37172 5.51187 5.61679 5.65947 5.82046 5.87001 5.94394 6.01110 6.07361 6.21200 6.38968 6.51032 6.56761 6.69397 6.72491 6.80534 7.11610 7.59760 7.63717 7.83220 8.49504 8.54894 8.82244 9.22596 9.42326 10.68163 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.004204 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.486592 B = 6659.074443 C = 7791.132015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.122 3.878 3 N -0.302 5.302 4 N -0.374 5.374 5 C 0.090 3.910 6 C 0.248 3.752 7 F -0.192 7.192 8 F -0.196 7.196 9 C 0.139 3.861 10 C -0.104 4.104 11 C -0.259 4.259 12 C 0.609 3.391 13 O -0.560 6.560 14 N -0.622 5.622 15 C 0.112 3.888 16 C 0.239 3.761 17 O -0.573 6.573 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.905 3.095 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.085 3.915 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.391 0.609 39 H 0.272 0.728 40 H 0.079 0.921 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 11.815 -6.816 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 N -0.123 5.123 4 N -0.155 5.155 5 C -0.033 4.033 6 C 0.193 3.807 7 F -0.173 7.173 8 F -0.178 7.178 9 C 0.011 3.989 10 C -0.162 4.162 11 C -0.273 4.273 12 C 0.397 3.603 13 O -0.440 6.440 14 N -0.355 5.355 15 C -0.010 4.010 16 C 0.197 3.803 17 O -0.384 6.384 18 C -0.574 4.574 19 H 0.090 0.910 20 C -0.130 4.130 21 N -0.537 5.537 22 Si 0.733 3.267 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.037 4.037 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.135 0.865 31 H 0.146 0.854 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.978 12.831 -7.991 15.406 hybrid contribution -0.056 -0.666 1.553 1.691 sum 2.922 12.165 -6.438 14.070 Atomic orbital electron populations 1.20264 0.85999 1.03643 1.03564 1.22319 0.96845 0.88950 0.96398 1.77050 0.85360 1.22298 1.27603 1.47731 1.04967 1.03732 1.59059 1.22585 0.87048 0.97731 0.95964 1.22308 0.87528 0.76170 0.94730 1.93057 1.91426 1.48714 1.84126 1.93011 1.61783 1.65694 1.97287 1.21384 0.96545 0.83889 0.97078 1.20674 0.92290 0.99542 1.03689 1.19939 0.91855 0.94632 1.20855 1.16851 0.77261 0.83745 0.82478 1.90718 1.54388 1.67881 1.31052 1.50225 1.64254 1.15251 1.05739 1.23468 0.99143 0.83153 0.95215 1.19850 0.81673 0.87932 0.90842 1.86048 1.23551 1.85008 1.43816 1.21533 1.06535 1.39011 0.90349 0.91011 1.25055 0.94921 0.93552 0.99468 1.69412 1.17928 1.41921 1.24451 0.86316 0.79937 0.78657 0.81827 1.19425 1.20667 1.20757 1.24264 1.00503 1.02773 0.76210 0.89828 0.90486 0.90099 0.86509 0.85396 0.86371 0.89717 0.90154 0.88357 0.91069 0.89565 0.75405 0.91797 0.90256 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.28 36.00 0.37 -0.63 16 2 C 0.12 1.98 7.26 -82.02 -0.60 1.38 16 3 N -0.30 -4.58 12.50 33.89 0.42 -4.15 16 4 N -0.37 -5.08 3.56 -56.61 -0.20 -5.28 16 5 C 0.09 0.82 6.22 -4.05 -0.03 0.80 16 6 C 0.25 2.42 5.55 37.16 0.21 2.63 16 7 F -0.19 -2.48 15.72 2.25 0.04 -2.44 16 8 F -0.20 -1.92 17.34 2.25 0.04 -1.88 16 9 C 0.14 2.19 6.95 -81.60 -0.57 1.62 16 10 C -0.10 -1.43 9.70 36.00 0.35 -1.08 16 11 C -0.26 -4.69 5.62 -105.07 -0.59 -5.28 16 12 C 0.61 12.71 7.21 -12.51 -0.09 12.62 16 13 O -0.56 -13.19 17.84 5.27 0.09 -13.10 16 14 N -0.62 -13.08 3.61 -179.40 -0.65 -13.73 16 15 C 0.11 2.39 8.23 -2.97 -0.02 2.37 16 16 C 0.24 5.58 1.40 -90.86 -0.13 5.46 16 17 O -0.57 -14.27 13.48 -35.23 -0.48 -14.74 16 18 C -0.54 -13.18 8.61 -34.44 -0.30 -13.47 16 19 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 21 N -0.90 -22.42 11.21 55.43 0.62 -21.80 16 22 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 26 C 0.09 1.83 7.99 -2.85 -0.02 1.81 16 27 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.10 8.01 -51.93 -0.42 0.69 16 30 H 0.12 0.85 7.64 -51.93 -0.40 0.45 16 31 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.95 6.12 -51.93 -0.32 0.63 16 35 H 0.10 1.60 7.96 -51.93 -0.41 1.19 16 36 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.09 1.68 8.09 -51.93 -0.42 1.26 16 38 H 0.39 9.91 6.61 45.56 0.30 10.21 16 39 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 40 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 41 H 0.06 1.46 8.14 -51.92 -0.42 1.03 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -30.28 362.16 -5.77 -36.05 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -4.59 Total: 11.50 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.51 Total: 9.91 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.19 Total: -44.97 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.38 Total: -27.84 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.07 Total: -4.32 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.28 -5.77 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356557978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.291 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds