Wall clock time and date at job start Tue Mar 31 2020 06:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99380 * 2 1 4 4 O 1.20828 * 120.00382 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99811 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47209 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.50735 * 304.89332 * 6 5 3 8 8 C 1.53294 * 109.51283 * 184.74864 * 6 5 3 9 9 N 1.47166 * 108.41628 * 187.79404 * 8 6 5 10 10 C 1.34777 * 120.99005 * 230.53394 * 9 8 6 11 11 O 1.21579 * 120.00319 * 354.94101 * 10 9 8 12 12 N 1.34774 * 119.99826 * 174.94286 * 10 9 8 13 13 C 1.46495 * 120.00110 * 185.08019 * 12 10 9 14 14 C 1.50706 * 109.47499 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99689 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00299 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00216 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99618 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00333 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99995 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47347 * 60.00135 * 21 19 17 23 23 H 1.48504 * 109.47187 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47259 * 299.99906 * 21 19 17 25 25 C 1.47148 * 118.02760 * 50.46261 * 9 8 6 26 26 C 1.53303 * 108.41750 * 309.53859 * 25 9 8 27 27 O 1.42956 * 109.22365 * 52.27874 * 26 25 9 28 28 H 1.08997 * 109.47548 * 60.00097 * 1 2 3 29 29 H 1.09007 * 109.46712 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47532 * 299.99866 * 1 2 3 31 31 H 1.08997 * 109.47270 * 60.00230 * 5 3 2 32 32 H 1.09000 * 109.47130 * 300.00259 * 5 3 2 33 33 H 1.09006 * 109.68354 * 307.49546 * 8 6 5 34 34 H 1.09001 * 109.68289 * 68.00969 * 8 6 5 35 35 H 0.97005 * 120.00450 * 5.07938 * 12 10 9 36 36 H 1.08994 * 109.47425 * 299.99922 * 13 12 10 37 37 H 1.09006 * 109.47295 * 59.99836 * 13 12 10 38 38 H 0.97002 * 119.99535 * 0.02562 * 16 14 13 39 39 H 0.96991 * 120.00340 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.68760 * 189.79255 * 25 9 8 41 41 H 1.09009 * 109.68252 * 69.27576 * 25 9 8 42 42 H 1.08999 * 109.51074 * 172.20253 * 26 25 9 43 43 H 1.09000 * 109.50543 * 292.35516 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 0.0011 7 1 3.5398 3.2582 -0.8417 8 6 5.5260 2.8252 -0.1179 9 7 5.9318 4.2268 0.0733 10 6 6.7502 4.8384 -0.8058 11 8 7.2381 4.2069 -1.7230 12 7 7.0277 6.1500 -0.6680 13 6 7.8259 6.8405 -1.6840 14 6 7.9900 8.2875 -1.2961 15 8 7.4889 8.7014 -0.2720 16 7 8.6925 9.1219 -2.0877 17 6 8.8422 10.4381 -1.7346 18 1 8.3974 10.8063 -0.8218 19 6 9.5670 11.2983 -2.5504 20 7 10.1086 10.8503 -3.6607 21 14 9.7715 13.0915 -2.0688 22 1 10.4608 13.1761 -0.7563 23 1 10.5799 13.7916 -3.0991 24 1 8.4357 13.7326 -1.9686 25 6 5.4163 4.9413 1.2518 26 6 3.8955 4.7553 1.3041 27 8 3.5887 3.3614 1.2223 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9563 0.7808 -0.8891 32 1 3.9556 0.7811 0.8908 33 1 5.9883 2.2021 0.6477 34 1 5.8363 2.4839 -1.1056 35 1 6.6988 6.6370 0.1038 36 1 8.8064 6.3702 -1.7571 37 1 7.3203 6.7781 -2.6477 38 1 9.0923 8.7911 -2.9073 39 1 10.6142 11.4507 -4.2304 40 1 5.6538 6.0020 1.1711 41 1 5.8674 4.5319 2.1558 42 1 3.5115 5.1582 2.2413 43 1 3.4357 5.2791 0.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358304565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:14 Heat of formation + Delta-G solvation = -181.340180 kcal Electronic energy + Delta-G solvation = -27964.922333 eV Core-core repulsion = 23625.230614 eV Total energy + Delta-G solvation = -4339.691719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96097 -40.37920 -38.86683 -38.06276 -36.75834 -34.80926 -34.55761 -33.84916 -33.29635 -31.39485 -29.74965 -28.53940 -27.74691 -26.27915 -24.39300 -23.87962 -22.19996 -20.90777 -19.78328 -19.69791 -18.50260 -17.95333 -17.87909 -17.30264 -16.97584 -16.39411 -16.11327 -15.81712 -15.68133 -15.17983 -15.03308 -14.60795 -14.46300 -14.38913 -14.00970 -13.91285 -13.60540 -13.52185 -13.32720 -12.74352 -12.48715 -12.40703 -12.27457 -11.95127 -11.90589 -11.64644 -11.58351 -11.13495 -11.11733 -11.00573 -10.74796 -10.51904 -10.34545 -10.32130 -10.02786 -9.64284 -8.97754 -8.65271 -8.49885 -8.11731 -6.52707 -3.94929 1.93463 2.25811 2.59160 3.12565 3.20762 3.24394 3.25820 3.34676 3.72774 3.89900 4.12347 4.27581 4.36970 4.62877 4.69345 4.74727 4.75587 4.82743 4.85630 4.95109 4.98042 5.07593 5.15753 5.19088 5.19994 5.37111 5.50219 5.54088 5.70786 5.86660 5.97361 6.04754 6.05529 6.25795 6.68359 6.84668 6.89805 7.44466 7.45166 7.90427 8.04837 8.43204 8.66689 9.02916 9.37547 9.85287 10.64020 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.001981 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.162583 B =14134.248134 C =14379.468305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.493 6.493 5 C -0.105 4.105 6 C 0.087 3.913 7 H 0.075 0.925 8 C 0.106 3.894 9 N -0.635 5.635 10 C 0.711 3.289 11 O -0.593 6.593 12 N -0.723 5.723 13 C 0.127 3.873 14 C 0.428 3.572 15 O -0.599 6.599 16 N -0.548 5.548 17 C -0.306 4.306 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.073 3.927 26 C 0.053 3.947 27 O -0.369 6.369 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.406 0.594 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.275 0.725 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 -20.800 7.243 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.379 6.379 5 C -0.143 4.143 6 C 0.027 3.973 7 H 0.093 0.907 8 C -0.018 4.018 9 N -0.374 5.374 10 C 0.412 3.588 11 O -0.471 6.471 12 N -0.382 5.382 13 C -0.001 4.001 14 C 0.214 3.786 15 O -0.486 6.486 16 N -0.182 5.182 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.051 4.051 26 C -0.024 4.024 27 O -0.288 6.288 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.050 -20.611 7.205 25.964 hybrid contribution 0.172 1.217 -0.118 1.234 sum -13.878 -19.394 7.087 24.879 Atomic orbital electron populations 1.23254 0.76228 1.03623 1.02642 1.86491 1.23551 1.33578 1.84445 1.23533 0.91935 0.81407 0.72743 1.90712 1.66944 1.36181 1.44024 1.21362 0.88493 0.97307 1.07135 1.22262 0.93796 0.92032 0.89164 0.90742 1.22049 0.93264 0.81984 1.04533 1.47141 1.51367 1.12922 1.25925 1.15691 0.79391 0.81805 0.81873 1.90895 1.56410 1.64920 1.34916 1.44941 1.57334 1.07972 1.28002 1.20815 0.96363 0.91784 0.91163 1.19735 0.85225 0.87029 0.86659 1.90483 1.53665 1.77355 1.27115 1.41775 1.45244 1.09255 1.21942 1.19679 1.31668 0.83951 1.08252 0.87719 1.25329 0.96236 1.00814 0.95308 1.69603 1.34256 1.37122 1.12417 0.85864 0.78553 0.81283 0.78208 1.19778 1.20846 1.19787 1.22417 0.95355 0.98453 0.88837 1.22946 0.93666 0.82402 1.03413 1.87948 1.81178 1.22642 1.36994 0.91902 0.88126 0.91845 0.85725 0.86373 0.90628 0.87629 0.75371 0.89843 0.90025 0.76993 0.91512 0.88688 0.90283 0.87381 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.55 101.05 1.07 1.29 16 2 O -0.36 -3.05 10.57 -39.25 -0.41 -3.47 16 3 C 0.46 4.44 7.84 36.01 0.28 4.72 16 4 O -0.49 -6.39 15.17 -24.05 -0.36 -6.75 16 5 C -0.11 -0.73 5.53 -27.88 -0.15 -0.88 16 6 C 0.09 0.83 2.32 -26.58 -0.06 0.77 16 7 H 0.07 0.84 7.96 -51.93 -0.41 0.42 16 8 C 0.11 1.07 5.91 -3.53 -0.02 1.05 16 9 N -0.63 -8.09 3.02 -177.99 -0.54 -8.63 16 10 C 0.71 11.68 8.31 -86.92 -0.72 10.95 16 11 O -0.59 -11.36 15.85 5.30 0.08 -11.27 16 12 N -0.72 -12.29 5.44 -66.42 -0.36 -12.65 16 13 C 0.13 2.36 6.16 -5.19 -0.03 2.33 16 14 C 0.43 9.75 7.85 -10.98 -0.09 9.67 16 15 O -0.60 -15.15 15.24 5.55 0.08 -15.06 16 16 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 17 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 18 H 0.11 2.93 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -23.74 13.05 55.50 0.72 -23.01 16 21 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 C 0.07 0.76 6.63 -3.53 -0.02 0.74 16 26 C 0.05 0.53 6.99 37.31 0.26 0.79 16 27 O -0.37 -4.06 9.62 -49.64 -0.48 -4.53 16 28 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.13 7.12 -51.93 -0.37 0.76 16 35 H 0.41 6.72 4.95 -40.82 -0.20 6.51 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.10 1.03 5.66 -51.93 -0.29 0.73 16 41 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -34.68 365.99 -6.32 -41.01 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -5.76 Total: 13.39 kcal Atomic # 6 Polarization: 23.34 SS G_CDS: 0.27 Total: 23.61 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.23 Total: -57.84 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.09 Total: -41.09 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.68 -6.32 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358304565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.333 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds