Wall clock time and date at job start Tue Mar 31 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99380 * 2 1 4 4 O 1.20828 * 120.00382 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99811 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.47209 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.50735 * 304.89332 * 6 5 3 8 8 C 1.53294 * 109.51283 * 184.74864 * 6 5 3 9 9 N 1.47166 * 108.41628 * 187.79404 * 8 6 5 10 10 C 1.34777 * 120.99005 * 230.53394 * 9 8 6 11 11 O 1.21579 * 120.00319 * 354.94101 * 10 9 8 12 12 N 1.34774 * 119.99826 * 174.94286 * 10 9 8 13 13 C 1.46495 * 120.00110 * 185.08019 * 12 10 9 14 14 C 1.50706 * 109.47499 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99689 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00299 * 180.02562 * 14 13 12 17 17 C 1.37095 * 120.00216 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99618 * 0.02562 * 17 16 14 19 19 C 1.38948 * 120.00333 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99995 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00093 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47347 * 60.00135 * 21 19 17 23 23 H 1.48504 * 109.47187 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47259 * 299.99906 * 21 19 17 25 25 C 1.47148 * 118.02760 * 50.46261 * 9 8 6 26 26 C 1.53303 * 108.41750 * 309.53859 * 25 9 8 27 27 O 1.42956 * 109.22365 * 52.27874 * 26 25 9 28 28 H 1.08997 * 109.47548 * 60.00097 * 1 2 3 29 29 H 1.09007 * 109.46712 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47532 * 299.99866 * 1 2 3 31 31 H 1.08997 * 109.47270 * 60.00230 * 5 3 2 32 32 H 1.09000 * 109.47130 * 300.00259 * 5 3 2 33 33 H 1.09006 * 109.68354 * 307.49546 * 8 6 5 34 34 H 1.09001 * 109.68289 * 68.00969 * 8 6 5 35 35 H 0.97005 * 120.00450 * 5.07938 * 12 10 9 36 36 H 1.08994 * 109.47425 * 299.99922 * 13 12 10 37 37 H 1.09006 * 109.47295 * 59.99836 * 13 12 10 38 38 H 0.97002 * 119.99535 * 0.02562 * 16 14 13 39 39 H 0.96991 * 120.00340 * 179.97438 * 20 19 17 40 40 H 1.08992 * 109.68760 * 189.79255 * 25 9 8 41 41 H 1.09009 * 109.68252 * 69.27576 * 25 9 8 42 42 H 1.08999 * 109.51074 * 172.20253 * 26 25 9 43 43 H 1.09000 * 109.50543 * 292.35516 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 3.9999 2.7423 0.0011 7 1 3.5398 3.2582 -0.8417 8 6 5.5260 2.8252 -0.1179 9 7 5.9318 4.2268 0.0733 10 6 6.7502 4.8384 -0.8058 11 8 7.2381 4.2069 -1.7230 12 7 7.0277 6.1500 -0.6680 13 6 7.8259 6.8405 -1.6840 14 6 7.9900 8.2875 -1.2961 15 8 7.4889 8.7014 -0.2720 16 7 8.6925 9.1219 -2.0877 17 6 8.8422 10.4381 -1.7346 18 1 8.3974 10.8063 -0.8218 19 6 9.5670 11.2983 -2.5504 20 7 10.1086 10.8503 -3.6607 21 14 9.7715 13.0915 -2.0688 22 1 10.4608 13.1761 -0.7563 23 1 10.5799 13.7916 -3.0991 24 1 8.4357 13.7326 -1.9686 25 6 5.4163 4.9413 1.2518 26 6 3.8955 4.7553 1.3041 27 8 3.5887 3.3614 1.2223 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9563 0.7808 -0.8891 32 1 3.9556 0.7811 0.8908 33 1 5.9883 2.2021 0.6477 34 1 5.8363 2.4839 -1.1056 35 1 6.6988 6.6370 0.1038 36 1 8.8064 6.3702 -1.7571 37 1 7.3203 6.7781 -2.6477 38 1 9.0923 8.7911 -2.9073 39 1 10.6142 11.4507 -4.2304 40 1 5.6538 6.0020 1.1711 41 1 5.8674 4.5319 2.1558 42 1 3.5115 5.1582 2.2413 43 1 3.4357 5.2791 0.4661 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358304565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:13 Heat of formation + Delta-G solvation = -207.256942 kcal Electronic energy + Delta-G solvation = -27966.046168 eV Core-core repulsion = 23625.230614 eV Total energy + Delta-G solvation = -4340.815554 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85368 -41.35754 -40.28490 -39.46857 -37.49851 -36.29151 -35.86902 -35.36637 -34.16792 -33.36929 -30.50223 -29.80857 -28.59313 -27.40861 -26.12269 -24.71017 -23.13400 -21.62362 -21.43004 -20.95574 -20.15518 -19.45489 -18.65393 -18.07748 -17.73724 -17.52282 -17.22209 -17.04260 -16.98937 -16.63268 -16.13575 -15.94981 -15.84137 -15.73938 -15.24691 -15.02932 -14.66760 -14.45442 -14.25918 -14.01285 -13.56467 -13.54114 -13.47351 -13.06337 -12.97839 -12.89831 -12.78351 -12.46947 -12.34667 -12.13738 -11.88013 -11.77738 -11.56416 -11.54881 -11.36662 -11.15570 -10.56553 -10.32206 -10.09713 -9.54004 -8.50849 -6.01186 1.22603 1.32746 1.38078 1.43668 1.54321 1.78694 1.88597 2.01201 2.27382 2.61444 2.72687 3.13021 3.16285 3.56130 3.66647 3.83317 3.95412 4.01369 4.17153 4.21123 4.27998 4.32425 4.34600 4.39979 4.42678 4.45270 4.57012 4.62930 4.71871 4.73770 4.78474 4.93579 5.25739 5.29661 5.38375 5.41279 5.74482 5.91715 6.05968 6.47481 6.75831 6.78647 7.03134 7.36142 7.45388 7.93758 8.65704 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.030160 B = 0.001981 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.162583 B =14134.248134 C =14379.468305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.535 6.535 5 C -0.099 4.099 6 C 0.090 3.910 7 H 0.051 0.949 8 C 0.105 3.895 9 N -0.631 5.631 10 C 0.709 3.291 11 O -0.623 6.623 12 N -0.725 5.725 13 C 0.141 3.859 14 C 0.433 3.567 15 O -0.624 6.624 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C 0.073 3.927 26 C 0.055 3.945 27 O -0.378 6.378 28 H 0.058 0.942 29 H 0.132 0.868 30 H 0.058 0.942 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.408 0.592 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.130 0.870 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -21.992 7.995 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.305 3.695 4 O -0.424 6.424 5 C -0.136 4.136 6 C 0.031 3.969 7 H 0.069 0.931 8 C -0.018 4.018 9 N -0.369 5.369 10 C 0.411 3.589 11 O -0.504 6.504 12 N -0.385 5.385 13 C 0.012 3.988 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.193 5.193 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.049 4.049 26 C -0.022 4.022 27 O -0.297 6.297 28 H 0.077 0.923 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.249 0.751 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.148 0.852 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -14.127 -21.855 7.976 27.218 hybrid contribution 0.099 1.486 -0.317 1.523 sum -14.027 -20.368 7.659 25.890 Atomic orbital electron populations 1.23493 0.75125 1.05563 1.02216 1.86491 1.24719 1.32870 1.83961 1.24051 0.92907 0.81092 0.71437 1.90700 1.68019 1.37500 1.46182 1.21469 0.86744 0.95682 1.09748 1.22246 0.93180 0.93491 0.88015 0.93058 1.22244 0.93627 0.80725 1.05204 1.47253 1.50108 1.13943 1.25608 1.15782 0.79719 0.81344 0.82104 1.90870 1.57794 1.65399 1.36329 1.44884 1.57449 1.08396 1.27782 1.20614 0.97407 0.88867 0.91907 1.20384 0.83541 0.88394 0.85681 1.90460 1.54261 1.78395 1.28133 1.41819 1.46040 1.09021 1.22430 1.19706 1.33178 0.85406 1.08442 0.89502 1.26130 0.95372 1.04574 0.95040 1.69671 1.34366 1.38513 1.12947 0.84922 0.78563 0.76339 0.78126 1.19468 1.19663 1.19543 1.22560 0.95728 0.98104 0.88550 1.22992 0.93150 0.82167 1.03936 1.87949 1.81349 1.22905 1.37477 0.92347 0.85019 0.92338 0.82763 0.83863 0.88102 0.88087 0.75108 0.88868 0.89010 0.76674 0.91060 0.89273 0.88248 0.85244 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 113.37 1.20 1.52 16 2 O -0.36 -5.53 10.57 -51.40 -0.54 -6.07 16 3 C 0.46 8.33 7.84 71.24 0.56 8.89 16 4 O -0.53 -13.87 15.17 27.02 0.41 -13.46 16 5 C -0.10 -1.14 5.53 29.85 0.16 -0.98 16 6 C 0.09 1.61 2.32 30.69 0.07 1.68 16 7 H 0.05 1.16 7.96 -2.39 -0.02 1.14 16 8 C 0.10 1.93 5.91 86.35 0.51 2.44 16 9 N -0.63 -15.33 3.02 -835.30 -2.52 -17.85 16 10 C 0.71 22.77 8.31 179.06 1.49 24.26 16 11 O -0.62 -23.46 15.85 -3.97 -0.06 -23.52 16 12 N -0.73 -24.35 5.44 -482.31 -2.63 -26.97 16 13 C 0.14 5.17 6.16 85.64 0.53 5.70 16 14 C 0.43 19.89 7.85 87.66 0.69 20.58 16 15 O -0.62 -31.90 15.24 -3.07 -0.05 -31.95 16 16 N -0.56 -27.87 5.29 -306.98 -1.62 -29.49 16 17 C -0.34 -18.51 9.68 84.04 0.81 -17.70 16 18 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 19 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 20 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 21 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 C 0.07 1.43 6.63 86.36 0.57 2.01 16 26 C 0.05 1.04 6.99 72.08 0.50 1.54 16 27 O -0.38 -7.79 9.62 -135.21 -1.30 -9.10 16 28 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 29 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 31 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.14 0.98 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.10 2.00 7.12 -2.39 -0.02 1.98 16 35 H 0.41 13.40 4.95 -92.70 -0.46 12.94 16 36 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 38 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 39 H 0.28 13.89 8.31 -92.72 -0.77 13.12 16 40 H 0.09 1.86 5.66 -2.39 -0.01 1.85 16 41 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.13 1.85 8.14 -2.39 -0.02 1.84 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.89 365.99 1.43 -73.46 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.12 Total: 39.61 kcal Atomic # 6 Polarization: 42.32 SS G_CDS: 7.56 Total: 49.89 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -6.49 Total: -122.43 kcal Atomic # 8 Polarization: -82.55 SS G_CDS: -1.54 Total: -84.09 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -74.89 1.43 -73.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358304565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.796 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds