Wall clock time and date at job start Tue Mar 31 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00121 * 2 1 4 4 O 1.20830 * 120.00229 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00203 * 179.97438 * 3 2 1 6 6 H 1.09008 * 109.55296 * 55.12009 * 5 3 2 7 7 C 1.53296 * 109.51153 * 294.99928 * 5 3 2 8 8 N 1.47148 * 108.38350 * 187.77281 * 7 5 3 9 9 C 1.34780 * 120.97970 * 230.50706 * 8 7 5 10 10 O 1.21596 * 119.99649 * 184.98916 * 9 8 7 11 11 N 1.34768 * 120.00158 * 4.99254 * 9 8 7 12 12 C 1.46504 * 120.00315 * 174.91279 * 11 9 8 13 13 C 1.50696 * 109.47304 * 180.02562 * 12 11 9 14 14 O 1.21295 * 120.00191 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00074 * 180.02562 * 13 12 11 16 16 C 1.37094 * 120.00246 * 179.97438 * 15 13 12 17 17 H 1.08006 * 119.99906 * 359.72792 * 16 15 13 18 18 C 1.38952 * 120.00020 * 179.72517 * 16 15 13 19 19 N 1.31406 * 119.99791 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99886 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47031 * 90.00216 * 20 18 16 22 22 H 1.48497 * 109.47243 * 210.00128 * 20 18 16 23 23 H 1.48498 * 109.47329 * 330.00387 * 20 18 16 24 24 C 1.47151 * 118.03930 * 50.78487 * 8 7 5 25 25 C 1.53713 * 108.16101 * 309.15925 * 24 8 7 26 26 H 1.08997 * 109.44698 * 172.37233 * 25 24 8 27 27 C 1.53001 * 109.69905 * 292.54583 * 25 24 8 28 28 O 1.42964 * 109.51341 * 175.24823 * 5 3 2 29 29 H 1.09010 * 109.46957 * 60.00126 * 1 2 3 30 30 H 1.08999 * 109.47487 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47265 * 300.00732 * 1 2 3 32 32 H 1.09002 * 109.67982 * 68.04520 * 7 5 3 33 33 H 1.09003 * 109.71138 * 307.51052 * 7 5 3 34 34 H 0.96997 * 120.00234 * 354.91828 * 11 9 8 35 35 H 1.09000 * 109.46863 * 59.99753 * 12 11 9 36 36 H 1.09001 * 109.47004 * 300.00164 * 12 11 9 37 37 H 0.97006 * 119.99848 * 359.72970 * 15 13 12 38 38 H 0.97005 * 119.99339 * 180.02562 * 19 18 16 39 39 H 1.09005 * 109.67870 * 68.93349 * 24 8 7 40 40 H 1.08994 * 109.68859 * 189.48805 * 24 8 7 41 41 H 1.09001 * 109.47369 * 179.76701 * 27 25 24 42 42 H 1.08998 * 109.46522 * 299.76913 * 27 25 24 43 43 H 1.09002 * 109.46923 * 59.76137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9617 0.7072 -0.8418 7 6 4.1091 0.6921 1.3105 8 7 5.5566 0.9499 1.3684 9 6 6.4277 -0.0426 1.6382 10 8 7.6105 0.2062 1.7715 11 7 5.9879 -1.3106 1.7602 12 6 6.9460 -2.4040 1.9423 13 6 6.2026 -3.7104 2.0506 14 8 4.9918 -3.7267 1.9819 15 7 6.8833 -4.8607 2.2237 16 6 6.2071 -6.0491 2.3228 17 1 5.1286 -6.0631 2.2664 18 6 6.9093 -7.2357 2.4956 19 7 8.2214 -7.2186 2.5646 20 14 5.9878 -8.8549 2.6313 21 1 5.8177 -9.4425 1.2781 22 1 6.7593 -9.7935 3.4851 23 1 4.6538 -8.6160 3.2384 24 6 6.0246 2.3243 1.1294 25 6 5.3890 2.8265 -0.1770 26 1 5.6117 3.8857 -0.3052 27 6 5.9530 2.0387 -1.3611 28 8 3.9729 2.6409 -0.1112 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 3.9259 -0.3820 1.3381 33 1 3.6169 1.1703 2.1574 34 1 5.0371 -1.4995 1.7273 35 1 7.5204 -2.2357 2.8532 36 1 7.6220 -2.4407 1.0880 37 1 7.8520 -4.8481 2.2748 38 1 8.7115 -8.0470 2.6849 39 1 5.7218 2.9646 1.9580 40 1 7.1106 2.3316 1.0370 41 1 5.4969 2.3948 -2.2848 42 1 7.0326 2.1807 -1.4106 43 1 5.7315 0.9793 -1.2313 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358310491.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:22 Heat of formation + Delta-G solvation = -172.260077 kcal Electronic energy + Delta-G solvation = -28931.511973 eV Core-core repulsion = 24592.213997 eV Total energy + Delta-G solvation = -4339.297976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28584 -40.31333 -39.01922 -38.11418 -36.69859 -34.94432 -34.59184 -33.82388 -32.89873 -31.40212 -30.11959 -28.14509 -27.84081 -26.17380 -25.07425 -24.37338 -22.13271 -20.78881 -19.74578 -19.57125 -18.72190 -18.13465 -17.94647 -17.13354 -16.98026 -16.61134 -16.03500 -15.84027 -15.56521 -15.22865 -14.95889 -14.67105 -14.50299 -14.38614 -14.08091 -13.77689 -13.54131 -13.51449 -13.30470 -12.72179 -12.46206 -12.32304 -12.25429 -12.07991 -11.98374 -11.71105 -11.65248 -11.14673 -11.13268 -11.08109 -10.68116 -10.47843 -10.46088 -10.34155 -10.08492 -9.65930 -9.04395 -8.66015 -8.58829 -8.12543 -6.53748 -3.95753 1.79056 1.98116 2.43576 3.09693 3.19210 3.20706 3.25726 3.56332 3.71695 3.80223 4.10076 4.16291 4.34549 4.46202 4.55038 4.71877 4.77903 4.84424 4.87116 4.92976 4.94649 5.14987 5.26126 5.28742 5.31295 5.37168 5.54991 5.56459 5.83032 5.86431 5.95087 6.00461 6.03358 6.17579 6.57214 6.63804 6.81190 7.41980 7.43889 7.89740 7.98399 8.42233 8.60797 9.02268 9.36735 9.84352 10.63086 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002977 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.805990 B = 9404.165715 C =11064.209752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.471 3.529 4 O -0.483 6.483 5 C 0.085 3.915 6 H 0.109 0.891 7 C 0.090 3.910 8 N -0.632 5.632 9 C 0.712 3.288 10 O -0.588 6.588 11 N -0.723 5.723 12 C 0.127 3.873 13 C 0.428 3.572 14 O -0.597 6.597 15 N -0.548 5.548 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 C 0.100 3.900 25 C 0.075 3.925 26 H 0.124 0.876 27 C -0.186 4.186 28 O -0.350 6.350 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 17.077 -5.864 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.311 3.689 4 O -0.369 6.369 5 C 0.025 3.975 6 H 0.126 0.874 7 C -0.034 4.034 8 N -0.371 5.371 9 C 0.414 3.586 10 O -0.466 6.466 11 N -0.383 5.383 12 C -0.001 4.001 13 C 0.213 3.787 14 O -0.484 6.484 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.023 4.023 25 C 0.017 3.983 26 H 0.142 0.858 27 C -0.243 4.243 28 O -0.269 6.269 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.624 17.466 -5.780 19.915 hybrid contribution -0.279 -1.108 0.083 1.145 sum -7.902 16.358 -5.697 19.040 Atomic orbital electron populations 1.23361 0.75298 1.04322 1.02654 1.86519 1.24076 1.32109 1.83911 1.22905 0.90617 0.81987 0.73402 1.90694 1.66517 1.36266 1.43397 1.21695 0.88334 0.86951 1.00487 0.87406 1.22142 0.81849 1.02908 0.96508 1.47143 1.05063 1.08656 1.76242 1.15665 0.84539 0.80403 0.78008 1.90913 1.14665 1.82599 1.58423 1.44966 1.11648 1.04292 1.77356 1.20829 0.91098 0.85309 1.02910 1.19729 0.88261 0.85055 0.85636 1.90494 1.13831 1.86450 1.57651 1.41783 1.09632 1.05269 1.61573 1.19728 0.93683 0.82700 1.47345 0.87649 1.25325 0.95631 0.99958 0.96769 1.69614 1.05925 1.29204 1.48675 0.85815 0.79272 0.80610 0.78345 1.20263 1.20806 1.19302 1.22309 1.01885 0.81195 0.96954 1.22893 0.79527 1.01466 0.94385 0.85846 1.22404 1.02491 1.01300 0.98149 1.88077 1.22755 1.21684 1.94352 0.91739 0.87419 0.91606 0.87450 0.89728 0.75359 0.89805 0.89957 0.77013 0.91571 0.90528 0.87302 0.91426 0.90579 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.77 10.56 -39.25 -0.41 -4.18 16 3 C 0.47 5.55 7.29 36.01 0.26 5.81 16 4 O -0.48 -6.90 16.26 -25.46 -0.41 -7.32 16 5 C 0.09 0.91 2.91 -27.73 -0.08 0.83 16 6 H 0.11 1.06 6.25 -51.92 -0.32 0.74 16 7 C 0.09 0.98 5.90 -3.54 -0.02 0.96 16 8 N -0.63 -7.70 2.53 -177.75 -0.45 -8.15 16 9 C 0.71 11.12 8.31 -86.92 -0.72 10.40 16 10 O -0.59 -10.80 15.84 5.28 0.08 -10.72 16 11 N -0.72 -11.77 5.44 -66.41 -0.36 -12.13 16 12 C 0.13 2.27 6.16 -5.19 -0.03 2.24 16 13 C 0.43 9.51 7.85 -10.99 -0.09 9.42 16 14 O -0.60 -14.76 15.24 5.54 0.08 -14.68 16 15 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 16 C -0.31 -8.12 9.68 -14.93 -0.14 -8.26 16 17 H 0.11 2.92 7.16 -52.48 -0.38 2.54 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.49 13.05 55.50 0.72 -22.77 16 20 Si 0.93 20.17 29.55 -169.99 -5.02 15.15 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C 0.10 1.00 6.04 -3.32 -0.02 0.98 16 25 C 0.08 0.65 3.93 -26.36 -0.10 0.55 16 26 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 27 C -0.19 -1.59 8.82 37.16 0.33 -1.26 16 28 O -0.35 -3.89 9.76 -55.11 -0.54 -4.43 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 32 H 0.11 1.18 5.66 -51.93 -0.29 0.89 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.41 6.49 4.95 -40.82 -0.20 6.29 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.40 9.22 7.90 -40.82 -0.32 8.90 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.11 1.14 7.11 -51.93 -0.37 0.78 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.64 6.12 -51.93 -0.32 0.32 16 LS Contribution 362.66 15.07 5.47 5.47 Total: -1.00 -33.24 362.66 -6.12 -39.35 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.57 Total: 14.11 kcal Atomic # 6 Polarization: 23.24 SS G_CDS: 0.35 Total: 23.59 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.14 Total: -56.35 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -1.20 Total: -41.33 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.24 -6.12 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358310491.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.905 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds