Wall clock time and date at job start Tue Mar 31 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00098 * 2 1 4 4 O 1.20819 * 120.00042 * 0.26518 * 3 2 1 5 5 C 1.50706 * 120.00072 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.50943 * 55.09547 * 5 3 2 7 7 C 1.53296 * 109.51029 * 294.99575 * 5 3 2 8 8 N 1.47147 * 108.38391 * 187.77141 * 7 5 3 9 9 C 1.34775 * 120.98588 * 230.51146 * 8 7 5 10 10 O 1.21586 * 119.99795 * 355.01557 * 9 8 7 11 11 N 1.34778 * 120.00379 * 175.01140 * 9 8 7 12 12 C 1.46499 * 120.00213 * 185.08410 * 11 9 8 13 13 C 1.50701 * 109.46918 * 180.02562 * 12 11 9 14 14 O 1.21292 * 120.00416 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99801 * 179.97438 * 13 12 11 16 16 C 1.37100 * 120.00373 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99489 * 0.02562 * 16 15 13 18 18 C 1.38951 * 120.00501 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99693 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00070 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47379 * 59.99316 * 20 18 16 22 22 H 1.48495 * 109.47189 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47087 * 299.99568 * 20 18 16 24 24 C 1.47159 * 118.03429 * 50.53814 * 8 7 5 25 25 C 1.53297 * 108.38072 * 309.46328 * 24 8 7 26 26 H 1.09004 * 109.50912 * 292.37412 * 25 24 8 27 27 C 1.52998 * 109.50856 * 172.28061 * 25 24 8 28 28 O 1.42953 * 109.51321 * 175.25023 * 5 3 2 29 29 H 1.09000 * 109.46974 * 300.00718 * 1 2 3 30 30 H 1.09001 * 109.47015 * 60.00206 * 1 2 3 31 31 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.68191 * 307.49933 * 7 5 3 33 33 H 1.09008 * 109.68152 * 68.05000 * 7 5 3 34 34 H 0.97005 * 119.99860 * 5.08065 * 11 9 8 35 35 H 1.09000 * 109.46865 * 299.99599 * 12 11 9 36 36 H 1.08996 * 109.47059 * 60.00243 * 12 11 9 37 37 H 0.96999 * 120.00170 * 0.02562 * 15 13 12 38 38 H 0.97006 * 119.99859 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.68346 * 69.18437 * 24 8 7 40 40 H 1.08996 * 109.68059 * 189.74187 * 24 8 7 41 41 H 1.08995 * 109.47914 * 60.00110 * 27 25 24 42 42 H 1.09004 * 109.47233 * 180.02562 * 27 25 24 43 43 H 1.09003 * 109.47135 * 299.99405 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0048 5 6 3.5664 1.2749 0.0006 6 1 3.9610 0.7066 -0.8417 7 6 4.1091 0.6922 1.3105 8 7 5.5567 0.9499 1.3685 9 6 6.4278 -0.0425 1.6382 10 8 6.0173 -1.1499 1.9272 11 7 7.7540 0.1926 1.5877 12 6 8.7009 -0.9101 1.7709 13 6 10.1097 -0.3844 1.6702 14 8 10.3036 0.7952 1.4650 15 7 11.1540 -1.2249 1.8081 16 6 12.4357 -0.7469 1.7160 17 1 12.6083 0.3035 1.5332 18 6 13.5124 -1.6136 1.8576 19 7 13.3023 -2.8915 2.0804 20 14 15.2586 -0.9620 1.7327 21 1 15.4813 0.0619 2.7850 22 1 16.2185 -2.0796 1.9191 23 1 15.4642 -0.3502 0.3953 24 6 6.0251 2.3233 1.1238 25 6 5.3889 2.8264 -0.1770 26 1 5.7911 2.2644 -1.0200 27 6 5.7028 4.3130 -0.3576 28 8 3.9730 2.6408 -0.1111 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.6168 1.1708 2.1570 33 1 3.9260 -0.3821 1.3382 34 1 8.0814 1.0920 1.4299 35 1 8.5503 -1.3589 2.7528 36 1 8.5371 -1.6617 0.9988 37 1 10.9990 -2.1684 1.9718 38 1 14.0540 -3.4965 2.1797 39 1 5.7256 2.9662 1.9515 40 1 7.1108 2.3292 1.0278 41 1 6.7826 4.4535 -0.4037 42 1 5.2498 4.6702 -1.2825 43 1 5.2989 4.8745 0.4848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358310496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:30 Heat of formation + Delta-G solvation = -175.499723 kcal Electronic energy + Delta-G solvation = -28371.321983 eV Core-core repulsion = 24031.883526 eV Total energy + Delta-G solvation = -4339.438457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22119 -40.33768 -38.95759 -38.12843 -36.77959 -34.91225 -34.64255 -33.90265 -33.27431 -31.41902 -30.11286 -28.22905 -27.37797 -26.60829 -24.96597 -23.95210 -22.00362 -21.26612 -19.89686 -19.72943 -18.58179 -18.07529 -17.86846 -17.47523 -16.95231 -16.50126 -16.37169 -15.85075 -15.67202 -15.38790 -14.73885 -14.58207 -14.47352 -14.38658 -14.12978 -13.60742 -13.53107 -13.46271 -13.12192 -12.81305 -12.59130 -12.42923 -12.36086 -12.06851 -11.98128 -11.71383 -11.65904 -11.26496 -11.17857 -11.13204 -10.72367 -10.53415 -10.50574 -10.34642 -10.08616 -9.66054 -9.05333 -8.67667 -8.60865 -8.13733 -6.54501 -3.96772 1.72291 1.89708 2.42648 3.10977 3.18705 3.19647 3.23049 3.48597 3.70538 3.81184 4.09269 4.18783 4.31477 4.42600 4.58923 4.71643 4.74334 4.76222 4.82809 4.85669 5.03601 5.14048 5.16200 5.19229 5.34868 5.43300 5.46402 5.61971 5.82453 5.86649 5.91399 5.94570 6.01766 6.12586 6.58978 6.63221 6.80286 7.35397 7.42734 7.88450 7.98046 8.41012 8.60055 9.01050 9.35552 9.83071 10.62178 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.024120 B = 0.002295 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.562352 B =12195.887776 C =13124.683527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.352 6.352 3 C 0.473 3.527 4 O -0.482 6.482 5 C 0.089 3.911 6 H 0.104 0.896 7 C 0.114 3.886 8 N -0.635 5.635 9 C 0.712 3.288 10 O -0.588 6.588 11 N -0.722 5.722 12 C 0.127 3.873 13 C 0.428 3.572 14 O -0.600 6.600 15 N -0.547 5.547 16 C -0.306 4.306 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C 0.077 3.923 25 C 0.077 3.923 26 H 0.072 0.928 27 C -0.144 4.144 28 O -0.354 6.354 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 6.777 -4.356 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.313 3.687 4 O -0.367 6.367 5 C 0.028 3.972 6 H 0.122 0.878 7 C -0.010 4.010 8 N -0.374 5.374 9 C 0.413 3.587 10 O -0.466 6.466 11 N -0.381 5.381 12 C -0.002 4.002 13 C 0.213 3.787 14 O -0.487 6.487 15 N -0.182 5.182 16 C -0.435 4.435 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.047 4.047 25 C 0.019 3.981 26 H 0.090 0.910 27 C -0.201 4.201 28 O -0.273 6.273 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.790 6.996 -4.249 22.343 hybrid contribution 0.947 -0.039 -0.024 0.948 sum -19.843 6.957 -4.274 21.457 Atomic orbital electron populations 1.23342 0.75449 1.04121 1.02767 1.86500 1.23952 1.32365 1.84098 1.22892 0.90599 0.81876 0.73330 1.90698 1.66481 1.36233 1.43278 1.21739 0.88269 0.86358 1.00800 0.87831 1.21881 0.79927 1.03943 0.95295 1.47159 1.05691 1.08260 1.76290 1.15666 0.81094 0.83640 0.78280 1.90916 1.77960 1.22229 1.55502 1.44939 1.03304 1.13260 1.76616 1.20834 0.87661 0.88709 1.02958 1.19719 0.85873 0.87317 0.85767 1.90482 1.85252 1.16581 1.56337 1.41779 1.05180 1.10332 1.60888 1.19675 0.80810 0.96156 1.46905 0.87709 1.25334 1.00633 0.95053 0.96675 1.69606 1.33198 1.02865 1.47696 0.85865 0.80772 0.78154 0.79130 1.19766 1.20846 1.19765 1.22507 1.00757 0.83042 0.98366 1.22631 0.80085 0.98607 0.96824 0.91021 1.21751 1.02499 0.92306 1.03562 1.88013 1.22836 1.21879 1.94571 0.91607 0.91701 0.87594 0.90345 0.86394 0.75358 0.89784 0.89915 0.76982 0.91489 0.89936 0.88232 0.89906 0.91156 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.35 -3.32 10.56 -39.26 -0.41 -3.74 16 3 C 0.47 5.23 7.29 36.01 0.26 5.49 16 4 O -0.48 -6.60 16.26 -25.45 -0.41 -7.02 16 5 C 0.09 0.93 3.30 -27.73 -0.09 0.83 16 6 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 7 C 0.11 1.26 5.89 -3.54 -0.02 1.24 16 8 N -0.64 -7.94 3.02 -178.01 -0.54 -8.48 16 9 C 0.71 11.30 8.31 -86.92 -0.72 10.58 16 10 O -0.59 -11.01 15.85 5.29 0.08 -10.92 16 11 N -0.72 -11.77 5.44 -66.42 -0.36 -12.13 16 12 C 0.13 2.27 6.16 -5.19 -0.03 2.24 16 13 C 0.43 9.50 7.85 -10.99 -0.09 9.42 16 14 O -0.60 -14.77 15.24 5.55 0.08 -14.69 16 15 N -0.55 -13.24 5.29 -10.96 -0.06 -13.30 16 16 C -0.31 -8.14 9.68 -14.93 -0.14 -8.28 16 17 H 0.11 2.89 7.16 -52.48 -0.38 2.51 16 18 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.48 13.05 55.50 0.72 -22.75 16 20 Si 0.93 20.18 29.55 -169.99 -5.02 15.16 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 C 0.08 0.78 5.92 -3.53 -0.02 0.76 16 25 C 0.08 0.72 3.40 -26.58 -0.09 0.63 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 C -0.14 -1.09 9.57 37.16 0.36 -0.73 16 28 O -0.35 -4.01 9.57 -55.11 -0.53 -4.54 16 29 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.12 1.37 7.12 -51.92 -0.37 1.00 16 34 H 0.41 6.40 4.95 -40.82 -0.20 6.20 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.40 9.23 7.90 -40.82 -0.32 8.91 16 38 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 1.01 5.66 -51.93 -0.29 0.72 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -33.35 367.34 -6.30 -39.64 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.77 Total: 13.18 kcal Atomic # 6 Polarization: 23.68 SS G_CDS: 0.38 Total: 24.06 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.23 Total: -56.67 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.19 Total: -40.91 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.35 -6.30 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358310496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.855 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds