Wall clock time and date at job start Tue Mar 31 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34232 * 116.99779 * 2 1 4 4 O 1.20825 * 119.99959 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99974 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.51474 * 305.00148 * 5 3 2 7 7 C 1.53296 * 109.51275 * 65.10382 * 5 3 2 8 8 N 1.47165 * 108.37854 * 172.17815 * 7 5 3 9 9 C 1.34777 * 120.94880 * 129.54494 * 8 7 5 10 10 O 1.21582 * 120.00142 * 175.01185 * 9 8 7 11 11 N 1.34776 * 119.99717 * 355.01034 * 9 8 7 12 12 C 1.46493 * 120.00153 * 185.08321 * 11 9 8 13 13 C 1.50696 * 109.47345 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99971 * 359.97438 * 13 12 11 15 15 N 1.34782 * 120.00306 * 180.02562 * 13 12 11 16 16 C 1.37092 * 120.00188 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99944 * 359.97438 * 16 15 13 18 18 C 1.38953 * 120.00201 * 179.97438 * 16 15 13 19 19 N 1.31409 * 120.00337 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 119.99812 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47093 * 89.99681 * 20 18 16 22 22 H 1.48496 * 109.46927 * 209.99733 * 20 18 16 23 23 H 1.48504 * 109.47007 * 329.99995 * 20 18 16 24 24 C 1.47160 * 118.07057 * 309.54332 * 8 7 5 25 25 C 1.53297 * 108.38437 * 50.50384 * 24 8 7 26 26 H 1.09006 * 109.50983 * 67.62151 * 25 24 8 27 27 C 1.52998 * 109.50894 * 187.77058 * 25 24 8 28 28 O 1.42956 * 109.22183 * 307.69555 * 25 24 8 29 29 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47499 * 300.00402 * 1 2 3 31 31 H 1.08997 * 109.46637 * 60.00594 * 1 2 3 32 32 H 1.09000 * 109.67864 * 291.94760 * 7 5 3 33 33 H 1.08996 * 109.68006 * 52.49990 * 7 5 3 34 34 H 0.97007 * 119.99673 * 5.08638 * 11 9 8 35 35 H 1.09008 * 109.47226 * 299.99971 * 12 11 9 36 36 H 1.09003 * 109.47417 * 59.99858 * 12 11 9 37 37 H 0.97003 * 119.99487 * 359.97438 * 15 13 12 38 38 H 0.96993 * 120.00103 * 179.97438 * 19 18 16 39 39 H 1.08998 * 109.68238 * 290.77932 * 24 8 7 40 40 H 1.09005 * 109.70983 * 170.24590 * 24 8 7 41 41 H 1.09001 * 109.46748 * 179.74361 * 27 25 24 42 42 H 1.09001 * 109.47235 * 299.74623 * 27 25 24 43 43 H 1.09001 * 109.46996 * 59.75182 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9604 0.7057 0.8424 7 6 4.1100 0.6941 -1.3097 8 7 5.5575 0.9531 -1.3667 9 6 6.4289 -0.0386 -1.6383 10 8 7.6115 0.2106 -1.7708 11 7 5.9893 -1.3066 -1.7628 12 6 6.9475 -2.3993 -1.9469 13 6 6.2044 -3.7055 -2.0592 14 8 4.9934 -3.7221 -1.9916 15 7 6.8854 -4.8554 -2.2338 16 6 6.2093 -6.0438 -2.3354 17 1 5.1311 -6.0585 -2.2752 18 6 6.9113 -7.2293 -2.5159 19 7 6.2634 -8.3684 -2.6128 20 14 8.7763 -7.2039 -2.6194 21 1 9.3498 -7.3615 -1.2586 22 1 9.2393 -8.3189 -3.4839 23 1 9.2224 -5.9109 -3.1978 24 6 6.0257 2.3260 -1.1187 25 6 5.3887 2.8263 0.1828 26 1 5.7903 2.2625 1.0248 27 6 5.7013 4.3127 0.3662 28 8 3.9728 2.6408 0.1155 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8898 31 1 -0.3632 0.5137 -0.8900 32 1 3.9270 -0.3801 -1.3389 33 1 3.6182 1.1738 -2.1559 34 1 5.0384 -1.4956 -1.7306 35 1 7.5221 -2.2292 -2.8575 36 1 7.6235 -2.4377 -1.0927 37 1 7.8538 -4.8422 -2.2875 38 1 6.7534 -9.1958 -2.7392 39 1 5.7268 2.9707 -1.9452 40 1 7.1114 2.3324 -1.0223 41 1 5.2442 4.6689 1.2894 42 1 6.7810 4.4534 0.4173 43 1 5.3011 4.8749 -0.4776 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358310499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:34 Heat of formation + Delta-G solvation = -168.049003 kcal Electronic energy + Delta-G solvation = -28689.346146 eV Core-core repulsion = 24350.230776 eV Total energy + Delta-G solvation = -4339.115370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.151 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22776 -40.33527 -39.04496 -38.27175 -36.71169 -35.03882 -34.68307 -33.94382 -33.33912 -31.82933 -30.04824 -28.32833 -27.80195 -26.23372 -24.87525 -24.11470 -21.90237 -21.26212 -19.97091 -19.74151 -18.98784 -18.15092 -17.97750 -17.31808 -17.01002 -16.59606 -16.27099 -15.86444 -15.82456 -15.39134 -15.03606 -14.63180 -14.58910 -14.39729 -14.07610 -13.62126 -13.45870 -13.22864 -13.10592 -12.85375 -12.67290 -12.59994 -12.31246 -12.23628 -12.14833 -12.12397 -11.77032 -11.27453 -11.26026 -11.08799 -10.72290 -10.66539 -10.52265 -10.18011 -10.08429 -9.72677 -9.13885 -8.80790 -8.67885 -8.33377 -6.43427 -3.96118 1.77026 1.94083 2.35802 2.97489 3.02243 3.10363 3.10791 3.45300 3.53240 3.72756 4.01252 4.10423 4.34448 4.40903 4.50024 4.57205 4.69952 4.77415 4.86557 4.89449 4.94582 5.11514 5.19746 5.25549 5.29560 5.34562 5.42643 5.58887 5.60776 5.73460 5.77230 5.79720 5.99229 6.08327 6.50767 6.56314 6.73301 7.40325 7.41662 7.88823 7.97997 8.40397 8.52792 8.78852 9.26876 9.59944 10.68670 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.002946 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.404670 B = 9501.725070 C =11255.173412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.349 6.349 3 C 0.471 3.529 4 O -0.483 6.483 5 C 0.091 3.909 6 H 0.106 0.894 7 C 0.090 3.910 8 N -0.634 5.634 9 C 0.713 3.287 10 O -0.588 6.588 11 N -0.724 5.724 12 C 0.124 3.876 13 C 0.437 3.563 14 O -0.579 6.579 15 N -0.575 5.575 16 C -0.310 4.310 17 H 0.122 0.878 18 C 0.046 3.954 19 N -0.874 5.874 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 C 0.100 3.900 25 C 0.074 3.926 26 H 0.070 0.930 27 C -0.141 4.141 28 O -0.353 6.353 29 H 0.108 0.892 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.408 0.592 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.375 0.625 38 H 0.276 0.724 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 20.902 5.786 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.266 6.266 3 C 0.311 3.689 4 O -0.368 6.368 5 C 0.031 3.969 6 H 0.123 0.877 7 C -0.035 4.035 8 N -0.373 5.373 9 C 0.415 3.585 10 O -0.467 6.467 11 N -0.383 5.383 12 C -0.004 4.004 13 C 0.223 3.777 14 O -0.463 6.463 15 N -0.213 5.213 16 C -0.439 4.439 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.513 5.513 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.023 4.023 25 C 0.016 3.984 26 H 0.088 0.912 27 C -0.199 4.199 28 O -0.272 6.272 29 H 0.126 0.874 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.248 0.752 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.442 21.210 5.704 22.232 hybrid contribution 0.893 -0.531 -0.121 1.046 sum -2.548 20.679 5.582 21.570 Atomic orbital electron populations 1.23368 0.75204 1.04392 1.02655 1.86523 1.24145 1.32029 1.83880 1.22863 0.90556 0.82032 0.73460 1.90696 1.66471 1.36280 1.43337 1.21664 0.88542 0.86398 1.00334 0.87689 1.22170 0.81726 1.02980 0.96613 1.47196 1.05157 1.08818 1.76095 1.15651 0.84532 0.80377 0.77974 1.90907 1.14691 1.82592 1.58469 1.44948 1.11655 1.04284 1.77432 1.20852 0.91226 0.85333 1.03021 1.19620 0.88289 0.84654 0.85101 1.90538 1.13631 1.86149 1.56011 1.42110 1.08077 1.06764 1.64314 1.19437 0.95332 0.81398 1.47698 0.86046 1.25066 0.98760 0.94966 0.97076 1.69612 1.36178 0.98109 1.47369 0.86675 0.84988 0.78706 0.79152 1.19382 1.19989 1.19186 1.22262 1.01786 0.81013 0.97239 1.22689 0.80114 0.98443 0.97155 0.91190 1.21718 1.02188 0.92440 1.03552 1.88020 1.22898 1.21807 1.94513 0.87353 0.91725 0.91594 0.87333 0.89638 0.75205 0.89662 0.89783 0.79218 0.91358 0.90522 0.87358 0.91179 0.90201 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.35 -3.73 10.56 -39.26 -0.41 -4.15 16 3 C 0.47 5.47 7.29 36.00 0.26 5.73 16 4 O -0.48 -6.83 16.26 -25.46 -0.41 -7.24 16 5 C 0.09 0.95 3.30 -27.73 -0.09 0.86 16 6 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 7 C 0.09 0.95 5.90 -3.53 -0.02 0.92 16 8 N -0.63 -7.60 3.02 -177.99 -0.54 -8.14 16 9 C 0.71 10.80 8.31 -86.92 -0.72 10.08 16 10 O -0.59 -10.46 15.85 5.29 0.08 -10.38 16 11 N -0.72 -11.29 5.44 -66.42 -0.36 -11.66 16 12 C 0.12 2.08 6.16 -5.20 -0.03 2.05 16 13 C 0.44 9.31 7.85 -10.98 -0.09 9.22 16 14 O -0.58 -14.11 15.24 5.54 0.08 -14.02 16 15 N -0.58 -13.01 5.09 -10.96 -0.06 -13.07 16 16 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 17 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 18 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 19 N -0.87 -24.59 13.96 55.50 0.77 -23.81 16 20 Si 0.88 18.65 27.74 -169.99 -4.71 13.93 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 24 C 0.10 0.99 5.91 -3.53 -0.02 0.97 16 25 C 0.07 0.65 3.40 -26.58 -0.09 0.56 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 C -0.14 -0.93 9.57 37.16 0.36 -0.57 16 28 O -0.35 -3.91 9.57 -55.11 -0.53 -4.44 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.11 1.16 5.66 -51.93 -0.29 0.86 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.41 6.27 4.95 -40.82 -0.20 6.07 16 35 H 0.09 1.36 8.14 -51.92 -0.42 0.93 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 38 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.11 1.12 7.12 -51.93 -0.37 0.75 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -34.51 364.22 -5.95 -40.46 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.73 Total: 13.25 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 0.37 Total: 23.77 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.18 Total: -56.67 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -1.19 Total: -40.23 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.71 Total: 13.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.51 -5.95 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358310499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.586 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds