Wall clock time and date at job start Tue Mar 31 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86797 * 119.99642 * 2 1 4 4 H 1.48502 * 109.46781 * 239.99378 * 3 2 1 5 5 H 1.48496 * 109.47631 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46895 * 119.99855 * 3 2 1 7 7 C 1.40126 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99427 * 180.02562 * 7 2 1 9 9 C 1.46111 * 120.00663 * 0.02562 * 7 2 1 10 10 O 1.21751 * 119.99666 * 359.97438 * 9 7 2 11 11 N 1.34771 * 120.00123 * 180.02562 * 9 7 2 12 12 C 1.39403 * 119.99875 * 179.97438 * 11 9 7 13 13 N 1.33690 * 125.61294 * 359.97015 * 12 11 9 14 14 C 1.30824 * 109.79404 * 180.02562 * 13 12 11 15 15 N 1.34480 * 108.23015 * 0.02562 * 14 13 12 16 16 C 1.46500 * 126.76756 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47494 * 124.99716 * 16 15 14 18 18 O 1.21279 * 119.99891 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99950 * 180.02562 * 17 16 15 20 20 C 1.46499 * 119.99647 * 180.02562 * 19 17 16 21 21 C 1.50697 * 109.46632 * 179.97438 * 20 19 17 22 22 C 1.38234 * 120.00260 * 269.72173 * 21 20 19 23 23 C 1.38237 * 120.00208 * 179.76537 * 22 21 20 24 24 C 1.38235 * 119.99758 * 0.51515 * 23 22 21 25 25 C 1.38231 * 120.00146 * 359.74333 * 24 23 22 26 26 C 1.38233 * 120.00104 * 359.97438 * 25 24 23 27 27 N 1.31353 * 125.61441 * 180.02562 * 12 11 9 28 28 H 0.96997 * 119.99763 * 0.02562 * 1 2 3 29 29 H 0.96994 * 120.00449 * 359.97438 * 11 9 7 30 30 H 1.07994 * 125.88356 * 179.74022 * 14 13 12 31 31 H 1.09000 * 109.47283 * 245.00541 * 16 15 14 32 32 H 1.09004 * 109.47012 * 4.99840 * 16 15 14 33 33 H 0.97001 * 119.99951 * 0.02562 * 19 17 16 34 34 H 1.08994 * 109.47042 * 299.99485 * 20 19 17 35 35 H 1.08998 * 109.47291 * 60.00104 * 20 19 17 36 36 H 1.08005 * 120.00094 * 0.02562 * 22 21 20 37 37 H 1.07999 * 119.99963 * 180.23306 * 23 22 21 38 38 H 1.08006 * 120.00162 * 179.71915 * 24 23 22 39 39 H 1.08000 * 120.00320 * 179.97438 * 25 24 23 40 40 H 1.08002 * 120.00363 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0942 1.6963 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0070 -1.2136 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2765 -2.4790 0.0005 10 8 0.0590 -2.4790 0.0005 11 7 1.9504 -3.6461 0.0016 12 6 1.2534 -4.8534 0.0021 13 7 -0.0771 -4.9842 0.0023 14 6 -0.3975 -6.2525 0.0034 15 7 0.7378 -6.9733 0.0045 16 6 0.8491 -8.4341 0.0055 17 6 1.7005 -8.8738 -1.1576 18 8 2.1687 -8.0483 -1.9127 19 7 1.9417 -10.1846 -1.3586 20 6 2.7699 -10.6119 -2.4890 21 6 2.8842 -12.1146 -2.4880 22 6 3.9170 -12.7287 -1.8046 23 6 4.0191 -14.1073 -1.7997 24 6 3.0944 -14.8713 -2.4869 25 6 2.0647 -14.2569 -3.1747 26 6 1.9592 -12.8786 -3.1748 27 7 1.7958 -6.0497 0.0036 28 1 -0.4849 0.8400 -0.0004 29 1 2.9204 -3.6461 0.0020 30 1 -1.4009 -6.6519 0.0077 31 1 1.3090 -8.7629 0.9374 32 1 -0.1441 -8.8742 -0.0845 33 1 1.5669 -10.8448 -0.7549 34 1 2.3104 -10.2828 -3.4209 35 1 3.7631 -10.1723 -2.3984 36 1 4.6419 -12.1317 -1.2711 37 1 4.8238 -14.5873 -1.2627 38 1 3.1767 -15.9482 -2.4869 39 1 1.3425 -14.8537 -3.7119 40 1 1.1549 -12.3985 -3.7125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358601475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:27 Heat of formation + Delta-G solvation = 66.907782 kcal Electronic energy + Delta-G solvation = -25725.729340 eV Core-core repulsion = 21736.404132 eV Total energy + Delta-G solvation = -3989.325208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35857 -40.13309 -39.23505 -37.26128 -35.26021 -33.97143 -32.71869 -32.19448 -31.73977 -31.38954 -30.09605 -28.06555 -26.44142 -25.67007 -23.06395 -22.06081 -21.87643 -21.56129 -20.61130 -19.27437 -17.88346 -17.27120 -17.14326 -16.87801 -16.13012 -15.89297 -15.48846 -15.38758 -15.32234 -14.83987 -14.77155 -14.13027 -13.91603 -13.75371 -13.55984 -13.40638 -13.31357 -12.99480 -12.55393 -12.37375 -12.22314 -11.56443 -11.51362 -11.24914 -11.14564 -11.02066 -10.50761 -10.29746 -10.26914 -9.73721 -9.43837 -9.36395 -9.30504 -9.11140 -9.08431 -8.81198 -7.56281 -7.39907 -6.21366 -4.68615 0.73990 0.90771 2.16841 2.43738 2.55651 2.97944 3.18129 3.22397 3.24820 3.41419 3.83739 4.03949 4.17619 4.33272 4.37512 4.48103 4.52724 4.58799 4.65496 4.67117 4.88553 4.93090 4.99990 5.02783 5.24042 5.31404 5.52293 5.56167 5.71237 5.84996 5.94426 6.02462 6.06421 6.10415 6.48301 6.50548 7.01170 7.10455 7.31712 7.41035 7.69958 8.01474 8.10981 8.23444 8.78099 8.97944 9.50080 10.55980 10.72790 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.034746 B = 0.001825 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.651984 B =15342.382023 C =15762.480583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.541 3.459 10 O -0.520 6.520 11 N -0.646 5.646 12 C 0.472 3.528 13 N -0.502 5.502 14 C 0.253 3.747 15 N -0.390 5.390 16 C 0.125 3.875 17 C 0.496 3.504 18 O -0.497 6.497 19 N -0.731 5.731 20 C 0.163 3.837 21 C -0.107 4.107 22 C -0.100 4.100 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.101 4.101 27 N -0.354 5.354 28 H 0.272 0.728 29 H 0.403 0.597 30 H 0.212 0.788 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.400 0.600 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -30.939 -2.191 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.345 3.655 10 O -0.396 6.396 11 N -0.301 5.301 12 C 0.104 3.896 13 N -0.231 5.231 14 C -0.045 4.045 15 N -0.185 5.185 16 C -0.003 4.003 17 C 0.280 3.720 18 O -0.369 6.369 19 N -0.386 5.386 20 C 0.040 3.960 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.119 4.119 27 N -0.191 5.191 28 H 0.082 0.918 29 H 0.237 0.763 30 H 0.228 0.772 31 H 0.128 0.872 32 H 0.141 0.859 33 H 0.235 0.765 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.551 -29.915 -2.761 30.252 hybrid contribution 0.602 -0.061 0.211 0.641 sum 4.153 -29.976 -2.550 30.370 Atomic orbital electron populations 1.69996 1.07085 1.27749 1.34066 1.25720 0.94712 1.00365 0.92658 0.86314 0.79711 0.80528 0.79533 1.19174 1.20474 1.19173 1.20708 0.93751 0.88492 1.54358 0.90951 1.18532 0.87888 0.81282 0.77815 1.90742 1.13031 1.84717 1.51089 1.43817 1.09359 1.00922 1.76008 1.20904 0.87265 0.87402 0.94017 1.70782 1.12896 1.15209 1.24181 1.26185 0.93574 0.87075 0.97698 1.49641 1.04870 1.04804 1.59175 1.21268 1.02221 0.78263 0.98517 1.20791 0.82054 0.82287 0.86884 1.90851 1.48923 1.51530 1.45556 1.45987 1.54180 1.07225 1.31230 1.20157 0.96328 0.89470 0.90082 1.19905 0.96470 0.94857 0.99537 1.21164 0.97619 0.94853 0.98226 1.21201 0.99322 0.93863 0.99640 1.21248 0.94845 1.00068 0.97039 1.21193 0.98553 0.94682 0.99627 1.21150 0.98384 0.93888 0.98494 1.78316 1.07667 0.97002 1.36132 0.91756 0.76256 0.77179 0.87196 0.85851 0.76549 0.90548 0.90475 0.85697 0.85816 0.85961 0.85830 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -23.02 11.82 55.55 0.66 -22.36 16 2 C 0.09 2.43 5.50 -17.35 -0.10 2.33 16 3 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -15.46 9.53 -35.72 -0.34 -15.80 16 8 H 0.07 1.88 7.85 -52.48 -0.41 1.47 16 9 C 0.54 16.31 7.70 -13.11 -0.10 16.21 16 10 O -0.52 -17.55 13.68 5.14 0.07 -17.48 16 11 N -0.65 -16.71 5.41 -14.23 -0.08 -16.79 16 12 C 0.47 11.73 8.80 -321.23 -2.83 8.91 16 13 N -0.50 -12.27 9.36 -14.97 -0.14 -12.41 16 14 C 0.25 4.40 12.62 -90.61 -1.14 3.26 16 15 N -0.39 -6.46 3.41 -63.80 -0.22 -6.67 16 16 C 0.13 1.22 7.03 -5.19 -0.04 1.19 16 17 C 0.50 5.89 7.87 -10.98 -0.09 5.80 16 18 O -0.50 -8.93 15.74 5.56 0.09 -8.85 16 19 N -0.73 -5.67 5.55 -61.48 -0.34 -6.01 16 20 C 0.16 1.33 5.80 -5.20 -0.03 1.30 16 21 C -0.11 -0.72 5.25 -104.62 -0.55 -1.26 16 22 C -0.10 -0.63 9.70 -39.58 -0.38 -1.01 16 23 C -0.12 -0.68 10.05 -39.58 -0.40 -1.08 16 24 C -0.11 -0.60 10.05 -39.58 -0.40 -1.00 16 25 C -0.12 -0.67 10.05 -39.59 -0.40 -1.06 16 26 C -0.10 -0.61 9.70 -39.58 -0.38 -1.00 16 27 N -0.35 -7.66 11.84 29.98 0.35 -7.30 16 28 H 0.27 7.43 8.29 -40.82 -0.34 7.10 16 29 H 0.40 9.11 8.80 -40.82 -0.36 8.75 16 30 H 0.21 2.36 8.06 -52.49 -0.42 1.93 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.12 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.40 1.85 8.46 -40.82 -0.35 1.51 16 34 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 37 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.12 0.42 8.06 -52.48 -0.42 -0.01 16 39 H 0.12 0.46 8.06 -52.49 -0.42 0.04 16 40 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -43.38 361.46 -10.82 -54.21 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.47 Total: 6.12 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: -7.17 Total: 16.79 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: 0.24 Total: -71.54 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: 0.16 Total: -26.33 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -43.38 -10.82 -54.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358601475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.115 kcal (2) G-P(sol) polarization free energy of solvation -43.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds