Wall clock time and date at job start Tue Mar 31 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 119.99884 * 2 1 4 4 O 1.21278 * 120.00209 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99939 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47039 * 180.02562 * 5 3 2 7 7 C 1.34382 * 126.76739 * 125.00075 * 6 5 3 8 8 N 1.30856 * 108.20561 * 180.02562 * 7 6 5 9 9 C 1.33644 * 109.78019 * 0.02562 * 8 7 6 10 10 N 1.39787 * 125.60333 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00173 * 0.02631 * 10 9 8 12 12 O 1.21556 * 119.99923 * 0.02562 * 11 10 9 13 13 C 1.47850 * 119.99931 * 179.97438 * 11 10 9 14 14 C 1.39936 * 120.02688 * 359.72149 * 13 11 10 15 15 C 1.38329 * 120.35352 * 179.74223 * 14 13 11 16 16 C 1.37753 * 120.41347 * 0.56498 * 15 14 13 17 17 C 1.40745 * 120.04380 * 359.69006 * 16 15 14 18 18 C 1.41446 * 120.17747 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99609 * 24.44827 * 18 17 16 20 20 C 1.39934 * 120.00135 * 204.44448 * 18 17 16 21 21 N 1.30831 * 119.99972 * 17.87645 * 20 18 17 22 22 Si 1.86801 * 119.99917 * 197.88405 * 20 18 17 23 23 H 1.48497 * 109.47148 * 59.99616 * 22 20 18 24 24 H 1.48494 * 109.47007 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46729 * 299.99665 * 22 20 18 26 26 C 1.39008 * 120.02709 * 180.02562 * 13 11 10 27 27 N 1.31181 * 108.78863 * 359.97438 * 9 8 7 28 28 H 1.08994 * 109.47121 * 59.99603 * 1 2 3 29 29 H 1.09007 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46868 * 299.99713 * 1 2 3 31 31 H 0.97002 * 120.00078 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.46823 * 60.00285 * 5 3 2 33 33 H 1.09002 * 109.47273 * 300.00170 * 5 3 2 34 34 H 1.07999 * 125.89377 * 0.02562 * 7 6 5 35 35 H 0.97006 * 119.99629 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.82202 * 0.02562 * 14 13 11 37 37 H 1.08004 * 119.78750 * 180.28119 * 15 14 13 38 38 H 1.08006 * 119.97703 * 179.72500 * 16 15 14 39 39 H 0.96997 * 120.00065 * 179.97438 * 21 20 18 40 40 H 1.08008 * 120.20290 * 359.95475 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 7 4.1342 2.5484 0.0011 7 6 4.9841 3.1008 0.8833 8 7 5.1720 4.3502 0.5428 9 6 4.4586 4.6329 -0.5514 10 7 4.4154 5.8720 -1.1970 11 6 5.1355 6.9063 -0.7193 12 8 5.8229 6.7615 0.2727 13 6 5.0903 8.2167 -1.4026 14 6 4.3045 8.3820 -2.5487 15 6 4.2531 9.6064 -3.1903 16 6 4.9833 10.6737 -2.7155 17 6 5.7834 10.5250 -1.5672 18 6 6.5339 11.6191 -1.0770 19 1 6.2242 12.6294 -1.2999 20 6 7.6776 11.3925 -0.3033 21 7 8.2548 10.2185 -0.3173 22 14 8.3802 12.7662 0.7497 23 1 7.3605 13.2045 1.7363 24 1 9.5833 12.2738 1.4675 25 1 8.7548 13.9122 -0.1173 26 6 5.8331 9.2837 -0.9107 27 7 3.8056 3.5565 -0.9198 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8401 0.0004 32 1 4.0095 0.6532 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 5.4343 2.5999 1.7276 35 1 3.8672 5.9874 -1.9889 36 1 3.7317 7.5504 -2.9317 37 1 3.6400 9.7251 -4.0715 38 1 4.9413 11.6254 -3.2246 39 1 9.0478 10.0615 0.2188 40 1 6.4443 9.1595 -0.0289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358939099.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:36 Heat of formation + Delta-G solvation = 65.922730 kcal Electronic energy + Delta-G solvation = -26334.601765 eV Core-core repulsion = 22345.233841 eV Total energy + Delta-G solvation = -3989.367923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.00960 -39.92376 -39.10703 -37.01320 -35.08253 -34.74856 -33.76964 -33.21498 -30.92243 -30.13318 -29.42715 -28.75569 -26.19849 -25.31169 -23.51526 -22.39144 -21.25283 -20.99086 -20.64913 -19.36571 -18.00323 -17.79002 -17.61072 -16.72551 -16.06847 -15.80317 -15.48966 -15.35737 -15.12594 -14.74232 -14.30659 -14.28294 -13.91173 -13.79757 -13.57360 -13.17777 -12.74182 -12.73450 -12.68345 -12.48760 -11.74966 -11.64863 -11.18212 -11.08120 -10.86335 -10.71203 -10.48302 -10.26161 -10.06679 -9.77894 -9.67556 -9.67244 -9.61274 -9.18397 -8.97371 -8.36226 -7.63077 -7.50750 -6.77752 -4.39119 1.59621 1.99729 2.16834 2.20218 2.72494 2.83845 3.10211 3.11977 3.16222 3.23203 3.29755 3.93923 4.01231 4.12284 4.24630 4.46840 4.59363 4.66706 4.76836 5.06395 5.09205 5.37623 5.53891 5.61884 5.82803 5.86636 6.09839 6.29766 6.37933 6.63963 6.72396 6.94339 6.95227 7.01324 7.09450 7.23180 7.38422 7.52184 7.72371 7.76107 7.85021 7.97332 8.18146 8.44767 8.52351 8.81395 8.84434 8.89316 10.16996 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.023146 B = 0.002365 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.425791 B =11836.632201 C =12691.932191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.737 5.737 3 C 0.494 3.506 4 O -0.500 6.500 5 C 0.120 3.880 6 N -0.379 5.379 7 C 0.266 3.734 8 N -0.510 5.510 9 C 0.459 3.541 10 N -0.632 5.632 11 C 0.563 3.437 12 O -0.483 6.483 13 C -0.123 4.123 14 C -0.219 4.219 15 C -0.095 4.095 16 C -0.210 4.210 17 C 0.099 3.901 18 C -0.459 4.459 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.782 5.782 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.088 4.088 27 N -0.324 5.324 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.116 0.884 33 H 0.130 0.870 34 H 0.221 0.779 35 H 0.421 0.579 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.286 0.714 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 -22.909 1.565 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.278 3.722 4 O -0.372 6.372 5 C -0.007 4.007 6 N -0.173 5.173 7 C -0.032 4.032 8 N -0.239 5.239 9 C 0.090 3.910 10 N -0.287 5.287 11 C 0.352 3.648 12 O -0.353 6.353 13 C -0.126 4.126 14 C -0.239 4.239 15 C -0.113 4.113 16 C -0.230 4.230 17 C 0.096 3.904 18 C -0.487 4.487 19 H 0.100 0.900 20 C -0.147 4.147 21 N -0.406 5.406 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.190 1.190 26 C -0.108 4.108 27 N -0.160 5.160 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.236 0.764 32 H 0.134 0.866 33 H 0.147 0.853 34 H 0.237 0.763 35 H 0.260 0.740 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.479 -22.082 1.942 23.734 hybrid contribution 0.251 -0.290 0.144 0.409 sum -8.228 -22.372 2.086 23.928 Atomic orbital electron populations 1.21544 0.79036 1.02296 1.02638 1.45708 1.08039 1.08295 1.77087 1.20674 0.89892 0.84323 0.77338 1.90853 1.69391 1.30905 1.46050 1.21425 0.92544 0.80344 1.06421 1.49661 1.36172 1.09320 1.22131 1.26188 0.91837 0.89525 0.95639 1.70675 1.26453 1.12498 1.14314 1.20504 0.92256 0.87695 0.90538 1.42945 1.49212 1.05448 1.31126 1.19081 0.78081 0.83590 0.84002 1.90814 1.37692 1.82616 1.24185 1.19290 1.03431 0.91656 0.98269 1.20364 1.06385 0.97388 0.99799 1.20431 0.99069 0.93344 0.98496 1.21108 1.05218 0.97964 0.98735 1.17585 0.90650 0.92514 0.89634 1.19557 1.07268 0.94203 1.27702 0.90027 1.25979 0.96401 0.96740 0.95559 1.69776 1.16188 1.22978 1.31626 0.86311 0.78670 0.81160 0.80305 1.18698 1.20214 1.18982 1.21640 0.97513 0.91530 1.00151 1.78286 1.26150 0.96399 1.15151 0.92046 0.90467 0.92134 0.76433 0.86595 0.85252 0.76300 0.74005 0.89122 0.88719 0.88501 0.90291 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.70 59.85 0.64 1.10 16 2 N -0.74 -3.75 5.71 -67.08 -0.38 -4.13 16 3 C 0.49 4.57 7.87 -10.99 -0.09 4.49 16 4 O -0.50 -7.73 15.74 5.56 0.09 -7.64 16 5 C 0.12 0.78 7.03 -5.19 -0.04 0.74 16 6 N -0.38 -4.81 3.41 -63.82 -0.22 -5.03 16 7 C 0.27 3.48 12.61 -90.68 -1.14 2.33 16 8 N -0.51 -9.89 9.37 -14.94 -0.14 -10.03 16 9 C 0.46 9.11 8.81 -320.94 -2.83 6.28 16 10 N -0.63 -12.81 5.38 -13.69 -0.07 -12.89 16 11 C 0.56 13.42 7.74 -12.33 -0.10 13.33 16 12 O -0.48 -12.97 15.00 5.32 0.08 -12.89 16 13 C -0.12 -3.01 5.87 -105.04 -0.62 -3.63 16 14 C -0.22 -4.78 9.55 -38.91 -0.37 -5.15 16 15 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 16 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 17 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 18 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 19 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 20 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 21 N -0.78 -20.95 10.95 55.55 0.61 -20.34 16 22 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.09 -2.40 8.24 -38.44 -0.32 -2.72 16 27 N -0.32 -5.66 11.83 30.02 0.36 -5.31 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.40 0.41 8.83 -40.82 -0.36 0.05 16 32 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.13 0.20 8.09 -51.93 -0.42 -0.22 16 34 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.42 7.42 6.84 -40.82 -0.28 7.14 16 36 H 0.09 1.66 6.38 -52.49 -0.33 1.33 16 37 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.29 7.07 8.30 -40.82 -0.34 6.73 16 40 H 0.14 3.97 5.74 -52.48 -0.30 3.67 16 LS Contribution 355.09 15.07 5.35 5.35 Total: -1.00 -39.58 355.09 -10.22 -49.80 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.20 Total: 8.91 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -6.66 Total: 0.20 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.15 Total: -57.72 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.17 Total: -20.53 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -39.58 -10.22 -49.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358939099.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.721 kcal (2) G-P(sol) polarization free energy of solvation -39.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds