Wall clock time and date at job start Tue Mar 31 2020 04:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46939 * 2 1 4 4 C 1.46501 * 119.99936 * 269.99462 * 3 2 1 5 5 C 1.50700 * 109.47204 * 270.00211 * 4 3 2 6 6 H 1.07997 * 119.99985 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99968 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00132 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47085 * 119.99891 * 9 7 5 12 12 H 1.48501 * 109.47231 * 240.00220 * 9 7 5 13 13 C 1.34780 * 120.00064 * 89.99792 * 3 2 1 14 14 O 1.21280 * 119.99727 * 179.97438 * 13 3 2 15 15 C 1.50692 * 120.00110 * 359.97438 * 13 3 2 16 16 C 1.50697 * 109.47306 * 179.97438 * 15 13 3 17 17 C 1.34851 * 125.88912 * 84.97882 * 16 15 13 18 18 C 1.40888 * 107.41956 * 180.02562 * 17 16 15 19 19 S 1.76198 * 126.29414 * 179.97438 * 18 17 16 20 20 N 1.65603 * 107.21630 * 90.00364 * 19 18 17 21 21 O 1.42106 * 106.40505 * 203.54095 * 19 18 17 22 22 O 1.42095 * 106.40628 * 336.46561 * 19 18 17 23 23 C 1.34852 * 107.41508 * 359.73457 * 18 17 16 24 24 N 1.36341 * 108.21917 * 0.42337 * 23 18 17 25 25 C 1.46499 * 125.63747 * 179.82823 * 24 23 18 26 26 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47507 * 300.00341 * 1 2 3 28 28 H 1.09011 * 109.46756 * 60.00149 * 1 2 3 29 29 H 1.08995 * 109.47085 * 239.99980 * 2 1 3 30 30 H 1.09003 * 109.46454 * 119.99749 * 2 1 3 31 31 H 1.09001 * 109.47115 * 30.00162 * 4 3 2 32 32 H 1.09004 * 109.47250 * 150.00321 * 4 3 2 33 33 H 0.96998 * 119.99830 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46975 * 60.00170 * 15 13 3 35 35 H 1.09001 * 109.47378 * 300.00106 * 15 13 3 36 36 H 1.08005 * 126.29307 * 0.02562 * 17 16 15 37 37 H 0.97006 * 120.00451 * 150.00296 * 20 19 18 38 38 H 0.97006 * 119.99922 * 329.99698 * 20 19 18 39 39 H 1.08007 * 125.89328 * 180.24930 * 23 18 17 40 40 H 1.09002 * 109.47391 * 269.69490 * 25 24 23 41 41 H 1.09001 * 109.46813 * 149.69546 * 25 24 23 42 42 H 1.09004 * 109.47041 * 29.69674 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1492 2.3895 -2.8779 8 7 3.3493 3.1256 -3.6181 9 14 5.9133 2.0954 -3.4174 10 1 6.6006 1.2394 -2.4173 11 1 5.9203 1.4161 -4.7379 12 1 6.6212 3.3963 -3.5261 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3065 2.4723 16 6 2.3183 2.2295 3.6177 17 6 1.4883 3.1457 4.1564 18 6 2.1877 3.7882 5.1971 19 16 1.5684 5.0723 6.2325 20 7 0.8656 4.3474 7.5452 21 8 2.7024 5.7753 6.7217 22 8 0.5177 5.6990 5.5098 23 6 3.4164 3.2359 5.2586 24 7 3.5044 2.2827 4.2878 25 6 4.6776 1.4490 4.0139 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5818 1.6876 -2.0284 32 1 2.0956 3.1410 -1.1385 33 1 3.6752 3.5154 -4.4444 34 1 2.6211 0.4188 2.5303 35 1 0.9431 1.0126 2.5298 36 1 0.4738 3.3497 3.8469 37 1 0.8548 4.8017 8.4022 38 1 0.4646 3.4685 7.4570 39 1 4.1973 3.5045 5.9548 40 1 5.3129 1.9455 3.2805 41 1 4.3544 0.4849 3.6214 42 1 5.2382 1.2964 4.9362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362605174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:17 Heat of formation + Delta-G solvation = -63.496704 kcal Electronic energy + Delta-G solvation = -26359.207448 eV Core-core repulsion = 22467.378678 eV Total energy + Delta-G solvation = -3891.828771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48403 -38.95289 -36.96326 -35.66629 -35.33472 -33.25759 -33.10313 -32.95862 -31.81756 -30.12690 -27.79926 -26.79801 -26.13465 -23.09164 -22.69997 -21.69165 -19.88006 -19.25613 -18.52917 -17.60535 -17.35321 -16.72357 -16.65386 -16.36824 -15.56918 -15.35689 -15.17146 -14.97600 -14.73521 -14.32348 -13.84692 -13.43930 -13.15562 -12.94599 -12.74098 -12.61551 -12.44329 -12.32548 -12.10286 -12.05193 -11.95559 -11.84015 -11.77868 -11.54592 -11.22728 -11.05697 -10.94197 -10.77209 -10.57725 -10.51153 -10.17632 -9.66505 -9.19134 -8.99850 -8.47539 -8.18434 -7.71224 -6.07902 -4.12988 0.60654 1.81960 2.45917 2.75747 3.25586 3.31514 3.34660 3.37851 3.44957 3.84024 3.93188 4.40457 4.48666 4.64387 4.69378 4.91363 4.93878 5.08607 5.13860 5.26166 5.29709 5.32851 5.47453 5.49416 5.59307 5.72916 5.86516 5.90620 5.97467 6.01047 6.17812 6.43515 6.73967 6.91972 6.95358 7.01454 7.15418 7.42653 7.50187 7.88115 8.19539 8.36696 8.85924 9.04579 9.52091 11.00218 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015578 B = 0.003150 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.981974 B = 8886.241660 C = 9330.367454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C -0.077 4.077 16 C 0.042 3.958 17 C -0.103 4.103 18 C -0.742 4.742 19 S 2.730 3.270 20 N -1.253 6.253 21 O -0.977 6.977 22 O -0.966 6.966 23 C 0.117 3.883 24 N -0.426 5.426 25 C 0.062 3.938 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.149 0.851 37 H 0.415 0.585 38 H 0.415 0.585 39 H 0.180 0.820 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -8.797 21.335 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.288 3.712 14 O -0.403 6.403 15 C -0.118 4.118 16 C -0.068 4.068 17 C -0.127 4.127 18 C -0.838 4.838 19 S 2.818 3.182 20 N -0.925 5.925 21 O -0.967 6.967 22 O -0.955 6.955 23 C -0.023 4.023 24 N -0.098 5.098 25 C -0.079 4.079 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.167 0.833 37 H 0.244 0.756 38 H 0.242 0.758 39 H 0.197 0.803 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.518 -7.319 20.683 22.220 hybrid contribution 1.053 -1.167 -0.441 1.632 sum -2.465 -8.486 20.242 22.087 Atomic orbital electron populations 1.22236 0.96685 1.01452 1.02508 1.21422 0.93631 0.84224 1.02543 1.48265 1.63877 1.13218 1.07646 1.19276 0.96227 0.93717 0.78028 1.21432 0.96924 1.31937 1.06248 0.92609 1.24943 0.97820 0.94934 0.96441 1.69937 1.35580 1.33324 1.14284 0.86456 0.84654 0.78037 0.78297 1.19956 1.20929 1.20855 1.20109 0.79257 0.87120 0.84713 1.90728 1.44927 1.17732 1.86908 1.20332 1.04142 0.97001 0.90286 1.19855 0.85937 1.03083 0.97962 1.20174 1.00116 0.95945 0.96446 1.30499 1.05446 1.27161 1.20727 1.00476 0.73251 0.72279 0.72151 1.53266 1.77721 1.33547 1.28003 1.93555 1.51949 1.70920 1.80310 1.93589 1.56820 1.72672 1.72403 1.21581 0.97089 0.90133 0.93458 1.44245 1.11577 1.28424 1.25587 1.22214 0.86746 0.95516 1.03468 0.92143 0.92959 0.91925 0.89914 0.91962 0.94979 0.93855 0.92714 0.88918 0.87142 0.83292 0.75554 0.75821 0.80292 0.89702 0.89396 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.54 16 3 N -0.60 -12.08 2.46 -175.06 -0.43 -12.51 16 4 C 0.25 6.35 5.16 -5.19 -0.03 6.32 16 5 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.50 10.06 7.67 -10.99 -0.08 9.98 16 14 O -0.53 -13.34 15.61 5.56 0.09 -13.26 16 15 C -0.08 -1.06 4.53 -29.04 -0.13 -1.19 16 16 C 0.04 0.61 5.38 -81.79 -0.44 0.17 16 17 C -0.10 -1.53 10.58 -39.78 -0.42 -1.95 16 18 C -0.74 -9.83 6.20 -39.78 -0.25 -10.08 16 19 S 2.73 32.83 6.43 -107.50 -0.69 32.14 16 20 N -1.25 -8.58 9.52 60.35 0.57 -8.01 16 21 O -0.98 -14.24 17.86 -57.17 -1.02 -15.26 16 22 O -0.97 -15.61 17.89 -57.17 -1.02 -16.64 16 23 C 0.12 1.42 11.19 -16.75 -0.19 1.23 16 24 N -0.43 -5.44 3.15 -119.90 -0.38 -5.82 16 25 C 0.06 0.58 10.92 59.85 0.65 1.23 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 28 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 29 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 30 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 34 H 0.09 1.02 6.18 -51.93 -0.32 0.70 16 35 H 0.11 1.23 7.18 -51.93 -0.37 0.85 16 36 H 0.15 2.10 8.06 -52.48 -0.42 1.67 16 37 H 0.42 2.05 8.96 -34.48 -0.31 1.74 16 38 H 0.42 1.95 8.96 -34.47 -0.31 1.64 16 39 H 0.18 1.60 8.06 -52.48 -0.42 1.17 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 0.70 6.94 -51.93 -0.36 0.33 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -41.01 369.96 -8.23 -49.23 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.69 Total: 1.51 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -0.95 Total: -7.85 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.50 Total: -52.08 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.96 Total: -45.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 32.83 SS G_CDS: -0.69 Total: 32.14 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -41.01 -8.23 -49.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362605174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.264 kcal (2) G-P(sol) polarization free energy of solvation -41.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds