Wall clock time and date at job start Tue Mar 31 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99809 * 2 1 4 4 H 1.48501 * 109.47149 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47400 * 119.99978 * 3 2 1 6 6 H 1.48498 * 109.46749 * 240.00042 * 3 2 1 7 7 C 1.38810 * 120.00181 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99963 * 204.26841 * 7 2 1 9 9 N 1.36939 * 119.99631 * 24.27248 * 7 2 1 10 10 C 1.46961 * 120.59535 * 29.46074 * 9 7 2 11 11 C 1.53805 * 108.39539 * 124.76112 * 10 9 7 12 12 N 1.46963 * 108.58366 * 49.63671 * 11 10 9 13 13 C 1.34779 * 120.59570 * 124.62158 * 12 11 10 14 14 O 1.21282 * 119.99791 * 180.02562 * 13 12 11 15 15 C 1.50696 * 119.99921 * 0.02711 * 13 12 11 16 16 C 1.53002 * 109.46997 * 179.97438 * 15 13 12 17 17 H 1.09003 * 110.45819 * 305.70004 * 16 15 13 18 18 C 1.51394 * 110.51136 * 68.29957 * 16 15 13 19 19 O 1.21281 * 126.44547 * 298.60868 * 18 16 15 20 20 N 1.34370 * 107.10767 * 118.64666 * 18 16 15 21 21 C 1.39528 * 112.25469 * 0.02562 * 20 18 16 22 22 C 1.39365 * 130.82651 * 179.97438 * 21 20 18 23 23 C 1.37944 * 120.12902 * 180.02562 * 22 21 20 24 24 C 1.38301 * 120.37485 * 359.95817 * 23 22 21 25 25 C 1.38390 * 119.82774 * 0.02562 * 24 23 22 26 26 C 1.37446 * 120.00838 * 0.11290 * 25 24 23 27 27 C 1.46968 * 118.80918 * 304.65035 * 12 11 10 28 28 C 1.46969 * 120.58723 * 209.74389 * 9 7 2 29 29 H 0.96996 * 119.99855 * 185.78192 * 1 2 3 30 30 H 1.09004 * 109.60638 * 244.53972 * 10 9 7 31 31 H 1.08991 * 109.61096 * 5.05605 * 10 9 7 32 32 H 1.09000 * 109.74291 * 289.84876 * 11 10 9 33 33 H 1.09002 * 109.53349 * 169.30343 * 11 10 9 34 34 H 1.08996 * 109.47038 * 299.99470 * 15 13 12 35 35 H 1.09004 * 109.47035 * 59.99953 * 15 13 12 36 36 H 0.97008 * 123.87110 * 179.97438 * 20 18 16 37 37 H 1.07993 * 119.93634 * 0.02562 * 22 21 20 38 38 H 1.07999 * 119.81304 * 179.97438 * 23 22 21 39 39 H 1.08004 * 120.08512 * 180.02562 * 24 23 22 40 40 H 1.08008 * 120.04515 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.60375 * 295.47332 * 27 12 11 42 42 H 1.09004 * 109.60447 * 174.97000 * 27 12 11 43 43 H 1.08995 * 109.60998 * 354.94790 * 28 9 7 44 44 H 1.08999 * 109.60626 * 115.29044 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6966 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0188 -1.2432 0.3850 9 7 1.4164 -2.3358 -0.4865 10 6 0.4017 -2.2524 -1.5463 11 6 0.8468 -3.1468 -2.7158 12 7 1.2082 -4.4682 -2.1836 13 6 0.6230 -5.5840 -2.6623 14 8 0.9291 -6.6689 -2.2149 15 6 -0.4117 -5.4834 -3.7533 16 6 -0.9128 -6.8840 -4.1115 17 1 -0.0759 -7.5349 -4.3645 18 6 -1.7134 -7.4696 -2.9678 19 8 -1.3082 -7.6988 -1.8479 20 7 -2.9570 -7.6883 -3.4271 21 6 -3.0994 -7.3170 -4.7645 22 6 -4.2028 -7.3753 -5.6138 23 6 -4.0956 -6.9420 -6.9190 24 6 -2.8954 -6.4463 -7.3949 25 6 -1.7954 -6.3850 -6.5574 26 6 -1.8966 -6.8182 -5.2569 27 6 2.2188 -4.5510 -1.1198 28 6 1.7778 -3.6572 0.0458 29 1 -0.4850 -0.8357 0.0846 30 1 -0.5578 -2.5986 -1.1621 31 1 0.3119 -1.2208 -1.8864 32 1 1.7107 -2.7030 -3.2107 33 1 0.0277 -3.2506 -3.4275 34 1 -1.2475 -4.8758 -3.4065 35 1 0.0331 -5.0207 -4.6343 36 1 -3.6735 -8.0623 -2.8905 37 1 -5.1436 -7.7604 -5.2494 38 1 -4.9538 -6.9899 -7.5728 39 1 -2.8168 -6.1079 -8.4176 40 1 -0.8563 -5.9989 -6.9256 41 1 3.1803 -4.2073 -1.5011 42 1 2.3057 -5.5823 -0.7774 43 1 2.5968 -3.5533 0.7575 44 1 0.9148 -4.0997 0.5433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000365739364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:11 Heat of formation + Delta-G solvation = -0.236549 kcal Electronic energy + Delta-G solvation = -28252.083781 eV Core-core repulsion = 24363.387320 eV Total energy + Delta-G solvation = -3888.696461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.80906 -39.56299 -38.47048 -36.92891 -35.77052 -34.04181 -33.73174 -31.51743 -30.46980 -30.08801 -29.26347 -27.15381 -25.83350 -23.56289 -22.94066 -22.77823 -21.69107 -21.20815 -20.17337 -18.60145 -18.09787 -17.58434 -16.99374 -16.40563 -16.18171 -15.91015 -15.39681 -15.03657 -14.65243 -14.35039 -14.25795 -13.97465 -13.76189 -13.59894 -13.57099 -13.30069 -13.21998 -12.98698 -12.75470 -12.37888 -12.19077 -11.83537 -11.78360 -11.20530 -11.09636 -11.02195 -10.78718 -10.63748 -10.55227 -10.39262 -10.05104 -10.02924 -9.49257 -9.33990 -9.15572 -8.55255 -8.26864 -8.22435 -6.90883 -6.12130 -3.33192 0.89594 1.00863 2.41070 2.81453 2.98797 3.34784 3.46870 3.48588 3.50986 3.67385 3.92089 4.14904 4.51148 4.54570 4.66273 4.74362 4.86416 4.99517 5.02376 5.10509 5.14654 5.33578 5.34899 5.40817 5.60175 5.66325 5.70242 5.76110 5.81623 5.88572 5.97893 6.07380 6.15165 6.17715 6.22217 6.34880 6.37619 6.61873 6.65317 6.76489 6.78869 6.92445 7.07201 7.86119 7.93642 7.94622 8.49889 8.56108 9.02165 9.75999 10.20463 11.14076 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.003027 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.254621 B = 9249.379336 C =10001.126697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.023 4.023 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.351 4.351 8 H 0.057 0.943 9 N -0.598 5.598 10 C 0.138 3.862 11 C 0.086 3.914 12 N -0.600 5.600 13 C 0.503 3.497 14 O -0.530 6.530 15 C -0.116 4.116 16 C -0.064 4.064 17 H 0.129 0.871 18 C 0.528 3.472 19 O -0.460 6.460 20 N -0.668 5.668 21 C 0.151 3.849 22 C -0.144 4.144 23 C -0.084 4.084 24 C -0.144 4.144 25 C -0.061 4.061 26 C -0.140 4.140 27 C 0.099 3.901 28 C 0.133 3.867 29 H 0.268 0.732 30 H 0.021 0.979 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.411 0.589 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 -13.185 -16.827 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.226 4.226 3 Si 0.896 3.104 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.480 4.480 8 H 0.075 0.925 9 N -0.322 5.322 10 C 0.011 3.989 11 C -0.039 4.039 12 N -0.333 5.333 13 C 0.290 3.710 14 O -0.407 6.407 15 C -0.156 4.156 16 C -0.085 4.085 17 H 0.147 0.853 18 C 0.313 3.687 19 O -0.329 6.329 20 N -0.313 5.313 21 C 0.053 3.947 22 C -0.166 4.166 23 C -0.103 4.103 24 C -0.163 4.163 25 C -0.080 4.080 26 C -0.143 4.143 27 C -0.025 4.025 28 C 0.006 3.994 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.249 0.751 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.953 -12.178 -15.920 21.215 hybrid contribution -0.335 -1.767 0.364 1.835 sum -7.288 -13.945 -15.556 22.126 Atomic orbital electron populations 1.70799 1.06584 1.30276 1.47753 1.25932 0.96537 1.01607 0.98484 0.83503 0.74755 0.75886 0.76268 1.21065 1.21939 1.21961 1.19996 0.97118 0.88089 1.42803 0.92488 1.44067 1.47237 1.01732 1.39195 1.21405 0.91002 0.99009 0.87485 1.22572 1.00031 0.83309 0.97945 1.47980 1.40906 1.06281 1.38132 1.20351 0.82607 0.84299 0.83755 1.90736 1.63274 1.26761 1.59881 1.21459 0.99220 0.95448 0.99515 1.20422 0.98245 0.98526 0.91316 0.85315 1.20491 0.81617 0.77636 0.88907 1.90906 1.72968 1.49190 1.19846 1.43898 1.14225 1.62379 1.10772 1.18284 0.95401 0.96815 0.84177 1.20369 0.96905 1.05658 0.93625 1.20882 0.97995 0.96980 0.94406 1.21056 0.92796 1.02408 1.00073 1.20252 0.99280 0.97347 0.91090 1.19840 0.94206 1.04980 0.95235 1.22143 0.90253 1.01130 0.88981 1.21306 0.98290 0.86582 0.93232 0.92101 0.96092 0.89116 0.91369 0.91022 0.88591 0.87592 0.75109 0.85699 0.85297 0.85309 0.85279 0.91978 0.89844 0.91459 0.96066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.75 12.43 55.49 0.69 -26.06 16 2 C -0.02 -0.65 4.69 -17.43 -0.08 -0.73 16 3 Si 1.07 24.55 29.98 -169.99 -5.10 19.45 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.35 -9.60 9.47 -15.06 -0.14 -9.74 16 8 H 0.06 1.57 7.94 -52.48 -0.42 1.15 16 9 N -0.60 -14.83 2.80 -171.78 -0.48 -15.32 16 10 C 0.14 3.09 4.89 -3.37 -0.02 3.07 16 11 C 0.09 1.51 6.52 -3.37 -0.02 1.49 16 12 N -0.60 -10.98 2.95 -172.22 -0.51 -11.49 16 13 C 0.50 8.81 7.39 -10.99 -0.08 8.72 16 14 O -0.53 -10.88 13.19 -16.52 -0.22 -11.10 16 15 C -0.12 -1.51 3.57 -27.88 -0.10 -1.61 16 16 C -0.06 -0.79 2.60 -92.37 -0.24 -1.03 16 17 H 0.13 1.61 7.96 -51.93 -0.41 1.20 16 18 C 0.53 7.76 7.82 -10.83 -0.08 7.67 16 19 O -0.46 -8.87 15.74 -16.52 -0.26 -9.14 16 20 N -0.67 -7.38 5.88 -9.63 -0.06 -7.44 16 21 C 0.15 1.50 7.12 -83.57 -0.59 0.90 16 22 C -0.14 -1.11 10.07 -39.27 -0.40 -1.51 16 23 C -0.08 -0.56 10.02 -39.67 -0.40 -0.95 16 24 C -0.14 -0.98 10.07 -39.50 -0.40 -1.38 16 25 C -0.06 -0.49 10.02 -39.81 -0.40 -0.89 16 26 C -0.14 -1.41 5.69 -104.34 -0.59 -2.00 16 27 C 0.10 1.90 6.59 -3.60 -0.02 1.88 16 28 C 0.13 2.91 6.67 -3.60 -0.02 2.89 16 29 H 0.27 7.97 6.77 -40.82 -0.28 7.70 16 30 H 0.02 0.49 7.92 -51.93 -0.41 0.08 16 31 H 0.09 2.22 6.32 -51.93 -0.33 1.89 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 1.02 5.91 -51.93 -0.31 0.71 16 34 H 0.10 1.25 7.72 -51.93 -0.40 0.85 16 35 H 0.11 1.07 7.91 -51.93 -0.41 0.66 16 36 H 0.41 3.64 8.96 -40.82 -0.37 3.27 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.61 6.99 -51.93 -0.36 1.24 16 43 H 0.07 1.44 7.93 -51.93 -0.41 1.02 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 356.49 15.07 5.37 5.37 Total: -1.00 -35.02 356.49 -10.01 -45.04 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.86 Total: 3.88 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -3.59 Total: 6.79 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.36 Total: -60.30 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.48 Total: -20.23 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.10 Total: 19.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.02 -10.01 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000365739364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.801 kcal (2) G-P(sol) polarization free energy of solvation -35.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds