Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99424 * 2 1 4 4 H 1.48510 * 109.46626 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47005 * 299.99496 * 3 2 1 6 6 H 1.48494 * 109.47261 * 59.99887 * 3 2 1 7 7 C 1.38942 * 120.00352 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00437 * 179.97438 * 7 2 1 9 9 N 1.37103 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99831 * 179.97438 * 9 7 2 11 11 O 1.21284 * 119.99821 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99600 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.46769 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72341 * 13 12 10 15 15 O 1.21593 * 119.99949 * 0.28071 * 14 13 12 16 16 N 1.34777 * 120.00128 * 180.27942 * 14 13 12 17 17 C 1.46499 * 120.00065 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47198 * 179.97438 * 17 16 14 19 19 H 1.08995 * 115.53593 * 330.81019 * 18 17 16 20 20 C 1.53040 * 117.48418 * 185.20997 * 18 17 16 21 21 H 1.08998 * 119.41507 * 140.81929 * 20 18 17 22 22 C 1.53439 * 118.56958 * 343.85820 * 20 18 17 23 23 C 1.50978 * 107.03389 * 296.99757 * 22 20 18 24 24 C 1.38779 * 129.72325 * 179.68840 * 23 22 20 25 25 C 1.38011 * 120.31350 * 179.97438 * 24 23 22 26 26 C 1.38250 * 119.87654 * 0.03528 * 25 24 23 27 27 C 1.38016 * 119.88845 * 359.97438 * 26 25 24 28 28 C 1.37611 * 120.73075 * 0.30745 * 27 26 25 29 29 C 1.50939 * 130.73238 * 180.51989 * 28 27 26 30 30 H 1.09003 * 117.16015 * 39.75809 * 29 28 27 31 31 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 32 32 H 0.96995 * 119.99724 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47210 * 60.00194 * 12 10 9 34 34 H 1.08994 * 109.47121 * 300.00164 * 12 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 36 36 H 0.97000 * 119.99549 * 359.97438 * 16 14 13 37 37 H 1.09000 * 109.47602 * 299.99940 * 17 16 14 38 38 H 1.09006 * 109.46868 * 59.99976 * 17 16 14 39 39 H 1.08997 * 109.92608 * 56.33861 * 22 20 18 40 40 H 1.09000 * 109.92199 * 177.44896 * 22 20 18 41 41 H 1.08007 * 119.83993 * 0.02562 * 24 23 22 42 42 H 1.08000 * 120.06380 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.05767 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.84134 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8892 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 7 2.1961 -5.9764 0.0004 14 6 1.7469 -7.2471 0.0064 15 8 0.5514 -7.4693 0.0072 16 7 2.6228 -8.2714 0.0114 17 6 2.1345 -9.6526 0.0173 18 6 3.3246 -10.6143 0.0216 19 1 4.2297 -10.2439 -0.4596 20 6 3.0241 -12.1103 -0.0953 21 1 3.6737 -12.7410 -0.7022 22 6 1.5916 -12.5937 0.1664 23 6 1.2714 -12.2695 1.6058 24 6 0.1084 -12.4958 2.3284 25 6 0.0260 -12.1157 3.6526 26 6 1.1064 -11.5061 4.2626 27 6 2.2638 -11.2801 3.5455 28 6 2.3551 -11.6496 2.2231 29 6 3.4947 -11.5229 1.2415 30 1 4.4988 -11.7217 1.6164 31 1 -0.4851 0.8400 -0.0004 32 1 0.3535 -2.3906 0.0005 33 1 0.6170 -4.9209 -0.8886 34 1 0.6177 -4.9205 0.8913 35 1 3.1498 -5.7991 0.0000 36 1 3.5764 -8.0941 0.0103 37 1 1.5285 -9.8201 0.9077 38 1 1.5294 -9.8279 -0.8722 39 1 0.8977 -12.0742 -0.4944 40 1 1.5265 -13.6692 0.0015 41 1 -0.7359 -12.9723 1.8524 42 1 -0.8810 -12.2941 4.2112 43 1 1.0450 -11.2071 5.2986 44 1 3.1075 -10.8041 4.0229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367814583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -12.978344 kcal Electronic energy + Delta-G solvation = -26487.452636 eV Core-core repulsion = 22598.203649 eV Total energy + Delta-G solvation = -3889.248987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27354 -39.68722 -38.20139 -37.59073 -34.54659 -34.27378 -33.59686 -31.97748 -31.35750 -30.79689 -28.37654 -27.85928 -26.27588 -24.31184 -23.31166 -21.85925 -20.78292 -20.58672 -19.86433 -19.56086 -18.26380 -17.82641 -17.04533 -16.20386 -15.82511 -15.59073 -15.50246 -15.20408 -15.05156 -14.56882 -14.39802 -14.09785 -13.91692 -13.81948 -13.57745 -13.44379 -13.38634 -12.95809 -12.49385 -12.29795 -12.15309 -11.92829 -11.85045 -11.61891 -11.36287 -11.13277 -10.97195 -10.66769 -10.40662 -10.39432 -10.31089 -9.94781 -9.63092 -9.09475 -8.99944 -8.68574 -8.60343 -8.53531 -8.08119 -6.49754 -3.91724 1.05628 1.17273 2.79765 3.11347 3.15194 3.23424 3.30246 3.46194 3.60906 3.77499 3.99360 4.10185 4.16447 4.35944 4.54130 4.59211 4.77058 4.79239 4.83593 4.89485 4.93423 5.09424 5.19054 5.20921 5.29008 5.42147 5.49246 5.54226 5.61091 5.63469 5.75998 5.89053 5.93033 5.97328 6.04222 6.11004 6.21865 6.30161 6.39606 6.56052 6.76222 6.79915 7.14380 7.47784 7.94583 8.28816 8.47257 8.84993 9.06536 9.41700 9.89574 10.67289 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022102 B = 0.001997 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.548599 B =14017.837916 C =14470.285682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.598 6.598 16 N -0.747 5.747 17 C 0.166 3.834 18 C -0.127 4.127 19 H 0.123 0.877 20 C -0.144 4.144 21 H 0.126 0.874 22 C -0.058 4.058 23 C -0.094 4.094 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.099 4.099 28 C -0.067 4.067 29 C -0.119 4.119 30 H 0.118 0.882 31 H 0.273 0.727 32 H 0.396 0.604 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.396 0.604 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -26.757 3.099 27.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.215 3.785 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.477 6.477 16 N -0.403 5.403 17 C 0.042 3.958 18 C -0.145 4.145 19 H 0.141 0.859 20 C -0.162 4.162 21 H 0.144 0.856 22 C -0.095 4.095 23 C -0.094 4.094 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.117 4.117 28 C -0.067 4.067 29 C -0.137 4.137 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.244 0.756 36 H 0.230 0.770 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.981 -26.773 3.102 27.116 hybrid contribution 0.680 1.073 0.112 1.276 sum 3.661 -25.699 3.214 26.157 Atomic orbital electron populations 1.69624 1.06001 1.28390 1.49501 1.25326 0.95669 0.99925 0.96879 0.85760 0.79665 0.80858 0.77811 1.19154 1.20626 1.20630 1.19772 0.93466 0.81997 1.48074 0.87653 1.41801 1.09503 1.04459 1.62750 1.19775 0.88285 0.85024 0.85378 1.90485 1.13773 1.86885 1.57313 1.20775 0.91241 0.84850 1.03116 1.44758 1.11174 1.03315 1.78967 1.15837 0.85198 0.80548 0.78022 1.90906 1.14081 1.84289 1.58408 1.44989 1.09001 1.05004 1.81317 1.20718 0.94155 0.78297 1.02628 1.22627 1.00489 0.91206 1.00169 0.85894 1.23012 0.97658 0.95015 1.00539 0.85600 1.20280 0.94944 1.01696 0.92551 1.20860 0.94179 0.98925 0.95436 1.20646 0.96834 1.00895 0.94252 1.21043 0.98702 0.98862 0.94815 1.21031 0.93247 0.99467 1.00045 1.20358 0.98365 0.99760 0.93213 1.19637 0.94348 0.99042 0.93636 1.21605 0.98147 1.05813 0.88146 0.86393 0.91658 0.77012 0.90036 0.90066 0.75646 0.77014 0.90933 0.91321 0.89533 0.89572 0.86138 0.85800 0.85781 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 13.05 55.50 0.72 -23.36 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.81 5.29 -10.96 -0.06 -13.87 16 10 C 0.43 10.00 7.85 -10.98 -0.09 9.92 16 11 O -0.60 -15.42 15.24 5.55 0.08 -15.34 16 12 C 0.13 2.46 6.15 -5.19 -0.03 2.43 16 13 N -0.72 -12.58 5.53 -66.41 -0.37 -12.95 16 14 C 0.70 11.97 8.57 -86.92 -0.74 11.23 16 15 O -0.60 -12.26 16.34 5.28 0.09 -12.17 16 16 N -0.75 -9.44 5.56 -65.22 -0.36 -9.80 16 17 C 0.17 1.90 4.96 -4.04 -0.02 1.88 16 18 C -0.13 -1.01 5.84 -90.56 -0.53 -1.54 16 19 H 0.12 0.78 8.03 -51.93 -0.42 0.36 16 20 C -0.14 -1.00 7.07 -90.16 -0.64 -1.64 16 21 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 22 C -0.06 -0.44 5.99 -27.52 -0.16 -0.60 16 23 C -0.09 -0.90 5.34 -103.90 -0.55 -1.45 16 24 C -0.11 -1.01 10.04 -39.46 -0.40 -1.40 16 25 C -0.12 -1.05 10.05 -39.66 -0.40 -1.45 16 26 C -0.12 -1.12 10.04 -39.66 -0.40 -1.52 16 27 C -0.10 -0.98 9.97 -39.89 -0.40 -1.38 16 28 C -0.07 -0.66 4.71 -104.35 -0.49 -1.15 16 29 C -0.12 -0.97 6.82 -91.41 -0.62 -1.59 16 30 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.40 9.58 7.90 -40.82 -0.32 9.26 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.41 6.79 7.45 -40.82 -0.30 6.48 16 36 H 0.40 3.96 8.41 -40.82 -0.34 3.61 16 37 H 0.07 0.99 5.99 -51.93 -0.31 0.67 16 38 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 39 H 0.09 0.67 7.84 -51.93 -0.41 0.26 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -33.35 372.53 -10.85 -44.20 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -5.84 Total: 18.22 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -5.71 Total: 3.83 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.06 Total: -59.98 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: 0.17 Total: -27.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.35 -10.85 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367814583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.225 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds