Wall clock time and date at job start Tue Mar 31 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 120.00020 * 2 1 4 4 H 1.48503 * 109.47130 * 240.00489 * 3 2 1 5 5 H 1.48505 * 109.47210 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47441 * 120.00494 * 3 2 1 7 7 C 1.38948 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00479 * 179.97438 * 7 2 1 9 9 N 1.37107 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99867 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99943 * 179.97438 * 10 9 7 13 13 N 1.46498 * 109.47008 * 179.97438 * 12 10 9 14 14 C 1.34783 * 119.99798 * 179.97438 * 13 12 10 15 15 O 1.21590 * 119.99775 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99905 * 179.97438 * 14 13 12 17 17 C 1.39960 * 119.99767 * 185.32069 * 16 14 13 18 18 C 1.38966 * 120.00553 * 213.31191 * 17 16 14 19 19 C 1.38174 * 120.16534 * 180.02562 * 18 17 16 20 20 C 1.38088 * 120.19919 * 359.97438 * 19 18 17 21 21 C 1.39344 * 120.01420 * 359.73270 * 20 19 18 22 22 C 1.48425 * 120.08330 * 180.29398 * 21 20 19 23 23 C 1.40847 * 126.04070 * 0.25468 * 22 21 20 24 24 C 1.35084 * 107.84914 * 179.97438 * 23 22 21 25 25 N 1.35041 * 107.98178 * 359.97438 * 24 23 22 26 26 H 0.96993 * 125.93455 * 180.02562 * 25 24 23 27 27 N 1.31629 * 126.03557 * 179.97438 * 22 21 20 28 28 C 1.38637 * 120.01044 * 33.33277 * 17 16 14 29 29 H 0.97002 * 119.99961 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99691 * 359.97438 * 9 7 2 31 31 H 1.09008 * 109.46936 * 59.99684 * 12 10 9 32 32 H 1.08998 * 109.46947 * 300.00007 * 12 10 9 33 33 H 0.96998 * 120.00565 * 0.02562 * 13 12 10 34 34 H 0.96999 * 119.99668 * 5.32354 * 16 14 13 35 35 H 1.07998 * 119.91701 * 0.04018 * 18 17 16 36 36 H 1.08002 * 119.89886 * 180.02562 * 19 18 17 37 37 H 1.07996 * 119.99150 * 180.02562 * 20 19 18 38 38 H 1.07995 * 126.07023 * 359.93874 * 23 22 21 39 39 H 1.07995 * 126.00814 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.10277 * 359.97438 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7465 0.0006 6 1 3.1020 1.6964 1.2124 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1957 -5.9764 -0.0007 14 6 1.7464 -7.2472 0.0002 15 8 0.5510 -7.4693 0.0011 16 7 2.6223 -8.2716 -0.0010 17 6 2.1595 -9.5878 -0.1125 18 6 2.8307 -10.6177 0.5355 19 6 2.3770 -11.9183 0.4272 20 6 1.2541 -12.2019 -0.3248 21 6 0.5715 -11.1745 -0.9729 22 6 -0.6394 -11.4768 -1.7763 23 6 -1.2118 -12.7497 -1.9657 24 6 -2.2974 -12.6021 -2.7558 25 7 -2.4169 -11.2917 -3.0596 26 1 -3.1085 -10.8965 -3.6130 27 7 -1.3710 -10.6018 -2.4334 28 6 1.0316 -9.8644 -0.8698 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3906 0.0002 31 1 0.6166 -4.9209 -0.8897 32 1 0.6174 -4.9205 0.8903 33 1 3.1494 -5.7993 -0.0011 34 1 3.5733 -8.0966 0.0754 35 1 3.7090 -10.4009 1.1253 36 1 2.9018 -12.7154 0.9330 37 1 0.9022 -13.2197 -0.4068 38 1 -0.8470 -13.6786 -1.5530 39 1 -2.9548 -13.3929 -3.0857 40 1 0.5085 -9.0654 -1.3741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376574980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:56 Heat of formation + Delta-G solvation = 40.881230 kcal Electronic energy + Delta-G solvation = -25852.172864 eV Core-core repulsion = 21861.719060 eV Total energy + Delta-G solvation = -3990.453804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.33914 -40.50141 -38.83120 -38.05702 -34.91744 -34.45141 -33.70852 -32.73266 -31.39103 -30.46007 -29.91118 -29.46179 -27.33448 -24.57304 -23.86987 -22.83942 -21.44913 -20.65788 -20.08467 -19.57832 -18.47574 -18.42619 -17.98931 -17.12845 -16.29878 -15.70353 -15.59499 -15.11564 -14.88744 -14.86639 -14.53061 -14.34446 -14.06609 -13.95013 -13.79695 -13.61418 -13.39808 -13.02302 -12.90691 -12.20472 -12.01864 -11.82424 -11.63363 -11.53582 -11.11000 -10.85752 -10.67646 -10.50953 -10.31801 -10.02885 -9.98673 -9.63056 -9.06821 -8.86841 -8.64187 -8.50571 -8.10996 -8.05523 -6.51557 -3.93789 0.84678 1.34071 1.79503 2.61515 2.65538 2.72541 3.13528 3.21515 3.25397 3.28415 3.73840 3.91551 4.06788 4.22627 4.35536 4.55259 4.81806 4.87523 5.00411 5.10510 5.16926 5.18022 5.40450 5.43004 5.50640 5.69143 5.81919 5.92891 5.97976 6.06068 6.18086 6.27643 6.30068 6.48669 6.49127 6.67436 6.97369 7.01117 7.04463 7.45495 7.45581 7.91556 8.08387 8.44358 8.65567 9.04038 9.38745 9.86477 10.65208 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.002112 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.782460 B =13252.840743 C =14587.803994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.127 3.873 13 N -0.718 5.718 14 C 0.702 3.298 15 O -0.574 6.574 16 N -0.689 5.689 17 C 0.173 3.827 18 C -0.143 4.143 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.001 4.001 22 C 0.116 3.884 23 C -0.260 4.260 24 C 0.055 3.945 25 N -0.476 5.476 26 H 0.440 0.560 27 N -0.272 5.272 28 C -0.093 4.093 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.408 0.592 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.177 0.823 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.259 -26.805 -2.969 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.001 4.001 13 N -0.375 5.375 14 C 0.402 3.598 15 O -0.451 6.451 16 N -0.336 5.336 17 C 0.078 3.922 18 C -0.165 4.165 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.004 4.004 22 C -0.049 4.049 23 C -0.289 4.289 24 C -0.092 4.092 25 N -0.184 5.184 26 H 0.284 0.716 27 N -0.096 5.096 28 C -0.115 4.115 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.244 0.756 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.168 0.832 39 H 0.194 0.806 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.895 -25.468 -3.312 25.752 hybrid contribution 0.293 0.392 -0.024 0.490 sum -1.602 -25.076 -3.336 25.348 Atomic orbital electron populations 1.69609 1.06011 1.28655 1.49158 1.25333 0.95676 0.99954 0.96762 0.85864 0.78769 0.80124 0.79153 1.19768 1.20854 1.19771 1.19681 0.93431 0.81985 1.48412 0.87712 1.41780 1.09514 1.04432 1.62545 1.19722 0.88279 0.84972 0.85647 1.90491 1.13720 1.86839 1.57460 1.20836 0.91141 0.84708 1.03393 1.44771 1.11503 1.03109 1.78103 1.15857 0.85170 0.80590 0.78192 1.90964 1.13628 1.83751 1.56784 1.42606 1.10084 1.03590 1.77360 1.17385 0.95828 0.82906 0.96099 1.20955 1.02165 0.92534 1.00806 1.20768 0.96397 0.95846 0.98947 1.21008 0.95869 0.98538 0.98382 1.17631 0.92323 0.93092 0.97355 1.20736 0.95192 0.91601 0.97321 1.21489 1.00058 0.98450 1.08900 1.22528 0.99654 0.87621 0.99416 1.46397 1.24734 1.05562 1.41720 0.71581 1.77706 0.99416 1.19063 1.13404 1.21327 0.96249 0.96479 0.97455 0.91514 0.76982 0.89768 0.89790 0.75395 0.75594 0.85522 0.85316 0.85599 0.83230 0.80556 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.64 5.29 -10.96 -0.06 -13.69 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.74 16 11 O -0.60 -15.23 15.24 5.55 0.08 -15.14 16 12 C 0.13 2.38 6.15 -5.20 -0.03 2.35 16 13 N -0.72 -12.05 5.53 -66.41 -0.37 -12.42 16 14 C 0.70 11.66 8.30 -86.91 -0.72 10.94 16 15 O -0.57 -11.44 14.03 5.29 0.07 -11.37 16 16 N -0.69 -8.88 5.35 -14.25 -0.08 -8.95 16 17 C 0.17 2.25 6.28 -83.73 -0.53 1.73 16 18 C -0.14 -1.43 9.95 -39.34 -0.39 -1.82 16 19 C -0.10 -0.88 10.03 -39.66 -0.40 -1.28 16 20 C -0.12 -1.14 9.57 -39.23 -0.38 -1.52 16 21 C 0.00 -0.02 5.87 -104.92 -0.62 -0.63 16 22 C 0.12 1.49 6.99 -82.77 -0.58 0.91 16 23 C -0.26 -2.42 10.17 -39.72 -0.40 -2.82 16 24 C 0.05 0.40 11.97 -17.26 -0.21 0.20 16 25 N -0.48 -4.44 7.35 30.42 0.22 -4.22 16 26 H 0.44 2.67 8.96 -182.63 -1.64 1.03 16 27 N -0.27 -3.80 12.36 33.43 0.41 -3.39 16 28 C -0.09 -1.38 8.29 -39.06 -0.32 -1.70 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 31 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.41 6.54 7.46 -40.82 -0.30 6.24 16 34 H 0.41 3.93 8.83 -40.82 -0.36 3.57 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 0.89 7.03 -52.49 -0.37 0.53 16 38 H 0.15 0.99 7.33 -52.49 -0.38 0.61 16 39 H 0.18 0.52 8.06 -52.49 -0.42 0.09 16 40 H 0.15 2.58 6.20 -52.49 -0.33 2.25 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -35.47 355.32 -8.88 -44.35 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -5.33 Total: 18.96 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -4.90 Total: 8.20 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: 0.86 Total: -65.91 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: 0.16 Total: -26.51 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.47 -8.88 -44.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376574980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.234 kcal (2) G-P(sol) polarization free energy of solvation -35.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds