Wall clock time and date at job start Tue Mar 31 2020 06:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86803 * 120.00071 * 2 1 4 4 H 1.48503 * 109.47239 * 240.27733 * 3 2 1 5 5 H 1.48495 * 109.47002 * 0.27695 * 3 2 1 6 6 H 1.48492 * 109.47205 * 120.27661 * 3 2 1 7 7 C 1.38955 * 120.00245 * 180.27976 * 2 1 3 8 8 H 1.07999 * 120.00192 * 179.72522 * 7 2 1 9 9 N 1.37099 * 119.99362 * 359.71960 * 7 2 1 10 10 C 1.34784 * 119.99504 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00107 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99961 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47124 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00021 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99711 * 0.02562 * 14 13 12 16 16 N 1.34769 * 120.00056 * 180.02562 * 14 13 12 17 17 C 1.46499 * 120.00249 * 180.02562 * 16 14 13 18 18 H 1.09006 * 115.52799 * 350.85738 * 17 16 14 19 19 C 1.52954 * 117.47168 * 205.35973 * 17 16 14 20 20 H 1.09006 * 117.99521 * 0.28981 * 19 17 16 21 21 C 1.53610 * 117.25093 * 147.01886 * 19 17 16 22 22 C 1.53551 * 108.18984 * 25.46893 * 21 19 17 23 23 C 1.50892 * 108.60451 * 63.32851 * 22 21 19 24 24 C 1.38086 * 120.39938 * 135.91955 * 23 22 21 25 25 C 1.38268 * 119.91442 * 179.97438 * 24 23 22 26 26 C 1.38261 * 120.04468 * 0.02562 * 25 24 23 27 27 C 1.38274 * 120.04521 * 359.97438 * 26 25 24 28 28 C 1.38085 * 119.89999 * 0.05414 * 27 26 25 29 29 C 1.50924 * 120.40861 * 179.97438 * 28 27 26 30 30 H 1.09007 * 115.71782 * 348.90110 * 29 28 27 31 31 H 0.97000 * 120.00281 * 359.72537 * 1 2 3 32 32 H 0.96999 * 120.00452 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46932 * 300.00223 * 12 10 9 34 34 H 1.09005 * 109.47238 * 59.99845 * 12 10 9 35 35 H 0.97000 * 119.99743 * 0.02562 * 13 12 10 36 36 H 0.97003 * 120.00267 * 0.02562 * 16 14 13 37 37 H 1.08998 * 109.71966 * 265.79125 * 21 19 17 38 38 H 1.09006 * 109.75414 * 145.16605 * 21 19 17 39 39 H 1.09001 * 109.61520 * 303.59116 * 22 21 19 40 40 H 1.08994 * 109.61588 * 183.06143 * 22 21 19 41 41 H 1.08005 * 120.04390 * 359.95249 * 24 23 22 42 42 H 1.07994 * 119.98083 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.97484 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.04898 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.0968 1.6994 -1.2159 5 1 1.2831 2.7464 0.0068 6 1 3.1069 1.6935 1.2090 7 6 2.0089 -1.2033 -0.0059 8 1 3.0889 -1.2033 -0.0104 9 7 1.3233 -2.3906 -0.0059 10 6 1.9973 -3.5579 -0.0110 11 8 3.2102 -3.5578 -0.0162 12 6 1.2438 -4.8630 -0.0116 13 7 2.1958 -5.9764 -0.0182 14 6 1.7465 -7.2472 -0.0194 15 8 0.5511 -7.4693 -0.0153 16 7 2.6223 -8.2715 -0.0249 17 6 2.1341 -9.6527 -0.0267 18 1 1.0624 -9.7724 0.1329 19 6 3.0571 -10.7281 0.5486 20 1 4.0274 -10.4162 0.9351 21 6 2.3939 -11.9168 1.2606 22 6 0.9756 -12.0830 0.6963 23 6 1.0778 -12.4244 -0.7700 24 6 0.2910 -13.4215 -1.3118 25 6 0.3926 -13.7257 -2.6567 26 6 1.2811 -13.0328 -3.4580 27 6 2.0690 -12.0344 -2.9156 28 6 1.9679 -11.7311 -1.5723 29 6 2.8227 -10.6439 -0.9681 30 1 3.6272 -10.2683 -1.6006 31 1 -0.4850 0.8400 0.0040 32 1 0.3533 -2.3906 -0.0021 33 1 0.6202 -4.9229 0.8804 34 1 0.6140 -4.9186 -0.8996 35 1 3.1494 -5.7991 -0.0211 36 1 3.5760 -8.0943 -0.0278 37 1 2.3430 -11.7220 2.3319 38 1 2.9708 -12.8236 1.0788 39 1 0.4221 -11.1518 0.8174 40 1 0.4636 -12.8873 1.2243 41 1 -0.4025 -13.9633 -0.6857 42 1 -0.2225 -14.5050 -3.0817 43 1 1.3592 -13.2711 -4.5086 44 1 2.7628 -11.4929 -3.5415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377035531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:48 Heat of formation + Delta-G solvation = -20.954635 kcal Electronic energy + Delta-G solvation = -26460.523940 eV Core-core repulsion = 22570.929075 eV Total energy + Delta-G solvation = -3889.594865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.01427 -39.68378 -38.27475 -37.54647 -34.43854 -34.17769 -33.64955 -32.52599 -31.37593 -30.64288 -29.70100 -27.50269 -24.99857 -24.38769 -23.41140 -22.21274 -21.39522 -20.78611 -19.61080 -19.14029 -18.43751 -17.92933 -17.02215 -16.60448 -15.70502 -15.53544 -15.38274 -15.29530 -14.71285 -14.53130 -14.44787 -14.13341 -14.03778 -13.98150 -13.49271 -13.43232 -13.14514 -12.85625 -12.47260 -12.18792 -12.15703 -12.03325 -11.73751 -11.63171 -11.40330 -11.26634 -11.10185 -10.86835 -10.51040 -10.32063 -10.25203 -10.09284 -9.62890 -9.18765 -8.95640 -8.77418 -8.63230 -8.36880 -8.10250 -6.51380 -3.93533 1.07556 1.17320 2.65640 3.12528 3.14592 3.21461 3.25282 3.46686 3.74464 3.85399 4.07204 4.24440 4.38261 4.44972 4.49042 4.55151 4.70618 4.78442 4.81810 4.89298 4.96082 4.97306 5.16523 5.17170 5.25789 5.44503 5.53401 5.59755 5.67550 5.72590 5.79020 5.84172 5.90652 5.98067 5.99834 6.07542 6.27400 6.29402 6.44545 6.48652 6.71607 6.78378 7.04204 7.45668 7.91941 8.18178 8.44963 8.74172 9.04342 9.39234 9.87115 10.65388 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.027241 B = 0.001894 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.604502 B =14780.266754 C =15007.814934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.128 3.872 13 N -0.722 5.722 14 C 0.709 3.291 15 O -0.594 6.594 16 N -0.720 5.720 17 C 0.125 3.875 18 H 0.145 0.855 19 C -0.153 4.153 20 H 0.116 0.884 21 C -0.084 4.084 22 C -0.094 4.094 23 C -0.081 4.081 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.110 4.110 28 C -0.043 4.043 29 C -0.133 4.133 30 H 0.116 0.884 31 H 0.275 0.725 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.407 0.593 36 H 0.398 0.602 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -26.725 -1.226 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.379 5.379 14 C 0.408 3.592 15 O -0.473 6.473 16 N -0.372 5.372 17 C 0.018 3.982 18 H 0.162 0.838 19 C -0.173 4.173 20 H 0.134 0.866 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.081 4.081 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.141 4.141 27 C -0.128 4.128 28 C -0.044 4.044 29 C -0.153 4.153 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.244 0.756 36 H 0.232 0.768 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.227 -26.650 -1.221 26.771 hybrid contribution 0.759 1.039 -0.229 1.307 sum 2.986 -25.612 -1.450 25.826 Atomic orbital electron populations 1.69604 1.06000 1.28645 1.49185 1.25331 0.95677 0.99940 0.96787 0.85865 0.78768 0.80147 0.79136 1.19787 1.20855 1.19789 1.19677 0.93423 0.82006 1.48407 0.87738 1.41783 1.09503 1.04437 1.62605 1.19754 0.88285 0.85004 0.85567 1.90488 1.13757 1.86862 1.57431 1.20801 0.91184 0.84782 1.03226 1.44757 1.11319 1.03225 1.78648 1.15774 0.85128 0.80481 0.77778 1.90906 1.13974 1.84154 1.58224 1.44417 1.08946 1.03841 1.80012 1.21745 0.98553 0.77268 1.00632 0.83761 1.23268 1.01144 0.98674 0.94176 0.86640 1.21207 0.94981 0.96584 0.99374 1.20913 0.97772 1.02817 0.91536 1.19779 0.96322 0.96288 0.95714 1.20967 0.99265 0.97715 0.95382 1.21119 0.98993 1.00118 0.93961 1.21114 0.96701 0.96501 0.99762 1.20920 0.99803 0.97803 0.94282 1.18959 0.96381 0.95728 0.93304 1.21937 1.01846 0.98881 0.92673 0.86593 0.91521 0.76990 0.89925 0.89947 0.75551 0.76751 0.90389 0.90814 0.89572 0.90430 0.86046 0.86198 0.86137 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 9 N -0.55 -13.61 5.29 -10.96 -0.06 -13.66 16 10 C 0.43 9.81 7.85 -10.98 -0.09 9.73 16 11 O -0.60 -15.24 15.24 5.55 0.08 -15.15 16 12 C 0.13 2.39 6.15 -5.20 -0.03 2.36 16 13 N -0.72 -12.09 5.53 -66.41 -0.37 -12.46 16 14 C 0.71 11.53 8.57 -86.92 -0.74 10.79 16 15 O -0.59 -11.66 15.91 5.29 0.08 -11.58 16 16 N -0.72 -8.70 5.57 -58.67 -0.33 -9.03 16 17 C 0.13 1.39 5.45 -67.92 -0.37 1.02 16 18 H 0.15 1.89 5.04 -51.93 -0.26 1.63 16 19 C -0.15 -1.27 6.48 -89.96 -0.58 -1.86 16 20 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 21 C -0.08 -0.62 6.14 -26.13 -0.16 -0.78 16 22 C -0.09 -0.76 5.47 -27.50 -0.15 -0.91 16 23 C -0.08 -0.78 5.46 -104.51 -0.57 -1.35 16 24 C -0.12 -1.01 9.69 -39.63 -0.38 -1.39 16 25 C -0.12 -1.04 10.05 -39.56 -0.40 -1.44 16 26 C -0.12 -1.07 10.05 -39.56 -0.40 -1.47 16 27 C -0.11 -1.06 9.76 -39.62 -0.39 -1.45 16 28 C -0.04 -0.44 5.58 -104.50 -0.58 -1.03 16 29 C -0.13 -1.27 6.10 -91.26 -0.56 -1.83 16 30 H 0.12 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.41 6.56 7.45 -40.82 -0.30 6.26 16 36 H 0.40 3.78 8.84 -40.82 -0.36 3.42 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.80 5.98 -51.93 -0.31 0.49 16 40 H 0.08 0.50 8.00 -51.93 -0.42 0.09 16 41 H 0.12 0.82 8.03 -52.48 -0.42 0.40 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -32.38 369.18 -10.68 -43.06 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -5.71 Total: 18.39 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -5.64 Total: 2.53 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.03 Total: -58.30 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.17 Total: -26.73 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.38 -10.68 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377035531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.103 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds