Wall clock time and date at job start Tue Mar 31 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47074 * 299.99928 * 3 2 1 6 6 H 1.48505 * 109.46997 * 59.99922 * 3 2 1 7 7 C 1.38948 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00037 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99797 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99902 * 180.02562 * 14 13 12 17 17 C 1.46507 * 119.99769 * 180.02562 * 16 14 13 18 18 H 1.08998 * 115.52776 * 350.57868 * 17 16 14 19 19 C 1.53038 * 117.46295 * 205.05476 * 17 16 14 20 20 H 1.09000 * 118.06104 * 144.51830 * 19 17 16 21 21 C 1.53658 * 116.99116 * 358.00143 * 19 17 16 22 22 C 1.53555 * 108.13039 * 249.97126 * 21 19 17 23 23 C 1.50890 * 108.61005 * 63.29341 * 22 21 19 24 24 C 1.38098 * 120.37431 * 135.99085 * 23 22 21 25 25 C 1.38267 * 119.91651 * 179.91703 * 24 23 22 26 26 C 1.38254 * 120.04232 * 0.02621 * 25 24 23 27 27 C 1.38261 * 120.04343 * 359.96678 * 26 25 24 28 28 C 1.38101 * 119.91921 * 0.04270 * 27 26 25 29 29 C 1.50882 * 120.39697 * 179.97438 * 28 27 26 30 30 H 1.09002 * 115.68993 * 57.02540 * 29 28 27 31 31 H 0.97002 * 120.00016 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00211 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47103 * 59.99751 * 12 10 9 34 34 H 1.09000 * 109.47247 * 299.99628 * 12 10 9 35 35 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 36 36 H 0.96999 * 120.00050 * 359.97438 * 16 14 13 37 37 H 1.09005 * 109.73915 * 130.30799 * 21 19 17 38 38 H 1.08997 * 109.72739 * 9.62715 * 21 19 17 39 39 H 1.08997 * 109.60893 * 303.55637 * 22 21 19 40 40 H 1.08995 * 109.61201 * 183.03326 * 22 21 19 41 41 H 1.07997 * 120.03948 * 359.88293 * 24 23 22 42 42 H 1.08005 * 119.97861 * 180.02562 * 25 24 23 43 43 H 1.08008 * 119.97824 * 179.97438 * 26 25 24 44 44 H 1.08003 * 120.04613 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 7 2.1959 -5.9764 0.0027 14 6 1.7467 -7.2471 0.0038 15 8 0.5512 -7.4693 0.0039 16 7 2.6225 -8.2715 0.0047 17 6 2.1341 -9.6528 0.0054 18 1 1.0626 -9.7721 0.1660 19 6 3.0584 -10.7279 0.5814 20 1 2.6048 -11.5552 1.1272 21 6 4.4423 -10.2703 1.0678 22 6 5.4967 -10.8253 0.0993 23 6 5.2642 -10.2212 -1.2636 24 6 6.3277 -9.7573 -2.0125 25 6 6.1039 -9.2069 -3.2611 26 6 4.8170 -9.1207 -3.7589 27 6 3.7522 -9.5853 -3.0092 28 6 3.9756 -10.1348 -1.7621 29 6 2.8215 -10.6446 -0.9346 30 1 2.2029 -11.4082 -1.4062 31 1 -0.4850 0.8401 -0.0004 32 1 0.3535 -2.3906 0.0005 33 1 0.6175 -4.9212 -0.8880 34 1 0.6169 -4.9201 0.8920 35 1 3.1495 -5.7992 0.0030 36 1 3.5761 -8.0942 0.0043 37 1 4.6255 -10.6547 2.0712 38 1 4.4876 -9.1813 1.0764 39 1 5.4038 -11.9097 0.0396 40 1 6.4932 -10.5598 0.4521 41 1 7.3328 -9.8237 -1.6232 42 1 6.9350 -8.8442 -3.8478 43 1 4.6433 -8.6903 -4.7342 44 1 2.7469 -9.5183 -3.3983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377035532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:52 Heat of formation + Delta-G solvation = -19.785142 kcal Electronic energy + Delta-G solvation = -27223.149659 eV Core-core repulsion = 23333.605507 eV Total energy + Delta-G solvation = -3889.544152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.96144 -39.55923 -38.24295 -37.45609 -34.42098 -33.97859 -33.64861 -32.56394 -31.35694 -30.74637 -29.77676 -27.47813 -24.61509 -24.35847 -23.57533 -22.15454 -21.58794 -20.28096 -19.57565 -19.11216 -18.52989 -17.97506 -16.95647 -16.10858 -15.91073 -15.58092 -15.39634 -15.10888 -15.05070 -14.55120 -14.46306 -14.09406 -13.99053 -13.66984 -13.51749 -13.37770 -13.12544 -13.02746 -12.58472 -12.17693 -12.09638 -11.99048 -11.62758 -11.52783 -11.44501 -11.13994 -10.92426 -10.83976 -10.40477 -10.32165 -10.14742 -10.03971 -9.63933 -9.16577 -8.91219 -8.75479 -8.61554 -8.38468 -8.09028 -6.50706 -3.92617 1.15457 1.23941 2.72328 3.10539 3.16175 3.22849 3.29665 3.54805 3.73220 3.77587 4.08524 4.30833 4.31526 4.45285 4.56123 4.57438 4.81963 4.86977 4.90766 4.93305 5.05661 5.08198 5.18115 5.23958 5.30574 5.44056 5.54061 5.61048 5.67523 5.70267 5.86183 5.92038 5.94085 5.98418 6.01436 6.09119 6.33246 6.38087 6.48297 6.54023 6.74895 6.84353 7.09125 7.46980 7.93535 8.21491 8.46193 8.78104 9.05660 9.40540 9.88474 10.66308 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002505 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.057805 B =11175.915877 C =11925.721146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.429 3.571 11 O -0.597 6.597 12 C 0.129 3.871 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.596 6.596 16 N -0.715 5.715 17 C 0.131 3.869 18 H 0.143 0.857 19 C -0.157 4.157 20 H 0.119 0.881 21 C -0.092 4.092 22 C -0.078 4.078 23 C -0.084 4.084 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.103 4.103 28 C -0.049 4.049 29 C -0.134 4.134 30 H 0.122 0.878 31 H 0.274 0.726 32 H 0.396 0.604 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.406 0.594 36 H 0.398 0.602 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -23.070 -2.042 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.484 6.484 12 C 0.001 3.999 13 N -0.380 5.380 14 C 0.409 3.591 15 O -0.475 6.475 16 N -0.369 5.369 17 C 0.023 3.977 18 H 0.161 0.839 19 C -0.176 4.176 20 H 0.137 0.863 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.085 4.085 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.121 4.121 28 C -0.049 4.049 29 C -0.154 4.154 30 H 0.140 0.860 31 H 0.083 0.917 32 H 0.230 0.770 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.244 0.756 36 H 0.234 0.766 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.864 -23.003 -2.035 24.395 hybrid contribution 0.656 1.051 -0.191 1.254 sum 8.520 -21.952 -2.226 23.652 Atomic orbital electron populations 1.69626 1.06003 1.28396 1.49471 1.25323 0.95663 0.99914 0.96847 0.85765 0.79684 0.80856 0.77821 1.19140 1.20617 1.20619 1.19776 0.93474 0.81995 1.48100 0.87651 1.41790 1.09490 1.04443 1.62720 1.19767 0.88297 0.85016 0.85463 1.90495 1.13754 1.86860 1.57289 1.20793 0.91176 0.84803 1.03173 1.44757 1.11267 1.03282 1.78682 1.15766 0.85093 0.80487 0.77721 1.90895 1.13950 1.84201 1.58477 1.44429 1.08990 1.03809 1.79681 1.21540 0.97736 0.77909 1.00520 0.83910 1.23235 0.97620 1.01652 0.95127 0.86328 1.21334 0.91887 1.00976 0.98734 1.20651 0.99161 1.00292 0.91385 1.19803 0.92626 0.99544 0.96479 1.20973 0.98371 0.99470 0.94782 1.21146 0.97050 0.99585 0.96027 1.21153 0.92749 0.99944 1.00077 1.20919 0.99143 0.97987 0.94039 1.18886 0.92572 0.99190 0.94256 1.21834 0.99168 1.03205 0.91204 0.85999 0.91652 0.77017 0.89988 0.89949 0.75633 0.76627 0.90434 0.91379 0.90354 0.90790 0.86115 0.86151 0.86090 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.98 13.05 55.50 0.72 -23.26 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.43 9.93 7.85 -10.99 -0.09 9.85 16 11 O -0.60 -15.41 15.24 5.54 0.08 -15.33 16 12 C 0.13 2.43 6.15 -5.19 -0.03 2.40 16 13 N -0.72 -12.48 5.53 -66.41 -0.37 -12.85 16 14 C 0.71 11.75 8.57 -86.92 -0.74 11.01 16 15 O -0.60 -11.62 15.91 5.28 0.08 -11.54 16 16 N -0.72 -9.13 4.72 -58.67 -0.28 -9.41 16 17 C 0.13 1.41 6.35 -67.93 -0.43 0.98 16 18 H 0.14 1.66 7.40 -51.93 -0.38 1.28 16 19 C -0.16 -1.27 6.21 -89.91 -0.56 -1.83 16 20 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 21 C -0.09 -0.71 5.86 -26.10 -0.15 -0.86 16 22 C -0.08 -0.58 5.84 -27.50 -0.16 -0.74 16 23 C -0.08 -0.80 5.52 -104.51 -0.58 -1.37 16 24 C -0.12 -1.09 9.69 -39.62 -0.38 -1.48 16 25 C -0.12 -1.15 10.05 -39.56 -0.40 -1.55 16 26 C -0.12 -1.24 10.05 -39.57 -0.40 -1.64 16 27 C -0.10 -1.11 9.76 -39.62 -0.39 -1.49 16 28 C -0.05 -0.50 4.65 -104.51 -0.49 -0.98 16 29 C -0.13 -1.23 6.02 -91.36 -0.55 -1.78 16 30 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.40 9.51 7.90 -40.82 -0.32 9.18 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.41 6.94 7.45 -40.82 -0.30 6.64 16 36 H 0.40 4.70 6.49 -40.82 -0.26 4.43 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.61 5.87 -51.93 -0.30 0.30 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.47 8.00 -51.93 -0.42 0.06 16 41 H 0.12 0.89 8.03 -52.49 -0.42 0.47 16 42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 44 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -31.93 367.98 -10.61 -42.53 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -5.73 Total: 19.86 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -5.59 Total: 2.64 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.02 Total: -59.29 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: 0.17 Total: -26.86 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.93 -10.61 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377035532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.748 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds