Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33480 * 125.50102 * 2 1 4 4 C 1.30218 * 109.67713 * 180.09803 * 3 2 1 5 5 N 1.34691 * 108.19885 * 359.66650 * 4 3 2 6 6 N 1.30963 * 125.49433 * 179.97438 * 2 1 3 7 7 C 1.46265 * 125.43351 * 180.70158 * 5 4 3 8 8 C 1.53846 * 109.18150 * 341.31895 * 7 5 4 9 9 N 1.47106 * 108.84897 * 45.75050 * 8 7 5 10 10 S 1.65597 * 120.97165 * 116.68112 * 9 8 7 11 11 O 1.42100 * 106.40140 * 156.18418 * 10 9 8 12 12 O 1.42098 * 106.40311 * 23.25864 * 10 9 8 13 13 N 1.65601 * 107.21687 * 269.72080 * 10 9 8 14 14 C 1.46505 * 120.00076 * 270.00281 * 13 10 9 15 15 C 1.46506 * 120.00051 * 89.99960 * 13 10 9 16 16 H 1.08996 * 109.46660 * 0.02562 * 15 13 10 17 17 C 1.52997 * 109.47289 * 239.99945 * 15 13 10 18 18 C 1.50699 * 109.46928 * 120.00016 * 15 13 10 19 19 H 1.08003 * 119.99962 * 0.02562 * 18 15 13 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99500 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00390 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46950 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47111 * 120.00373 * 22 20 18 25 25 H 1.48500 * 109.47074 * 240.00166 * 22 20 18 26 26 C 1.47478 * 118.04850 * 296.40947 * 9 8 7 27 27 H 1.09006 * 109.47411 * 89.99646 * 1 2 3 28 28 H 1.08998 * 109.47759 * 209.99512 * 1 2 3 29 29 H 1.09001 * 109.47148 * 329.99889 * 1 2 3 30 30 H 1.09004 * 109.51648 * 101.38870 * 7 5 4 31 31 H 1.09005 * 109.50825 * 221.54660 * 7 5 4 32 32 H 1.09000 * 109.67399 * 285.94323 * 8 7 5 33 33 H 1.08995 * 109.66254 * 165.55486 * 8 7 5 34 34 H 1.08999 * 109.46723 * 270.00194 * 14 13 10 35 35 H 1.08997 * 109.46979 * 29.99898 * 14 13 10 36 36 H 1.09005 * 109.46961 * 150.00249 * 14 13 10 37 37 H 1.09002 * 109.47153 * 179.97438 * 17 15 13 38 38 H 1.09001 * 109.46832 * 60.00146 * 17 15 13 39 39 H 1.09004 * 109.47261 * 300.00128 * 17 15 13 40 40 H 0.97002 * 119.99804 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.94073 * 162.70600 * 26 9 8 42 42 H 1.08997 * 109.94565 * 283.94372 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5349 0.7316 -0.0021 5 7 3.5908 -0.6142 0.0039 6 7 2.2674 -1.0663 0.0005 7 6 4.8166 -1.4120 0.0185 8 6 5.9954 -0.5359 -0.4396 9 7 5.9219 0.7598 0.2532 10 16 7.1175 1.2385 1.2941 11 8 7.0622 2.6576 1.3433 12 8 8.2849 0.5185 0.9228 13 7 6.6973 0.7017 2.8033 14 6 5.8908 1.5501 3.6843 15 6 7.1321 -0.6216 3.2575 16 1 7.7174 -1.1007 2.4728 17 6 5.9061 -1.4797 3.5762 18 6 7.9781 -0.4747 4.4959 19 1 8.1721 0.5062 4.9042 20 6 8.5044 -1.5924 5.1079 21 7 8.2685 -2.7868 4.6105 22 14 9.5536 -1.4103 6.6427 23 1 9.6681 0.0274 6.9963 24 1 8.9201 -2.1469 7.7657 25 1 10.9064 -1.9667 6.3863 26 6 4.7554 1.6224 -0.0114 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 5.0018 -1.7765 1.0290 31 1 4.7085 -2.2578 -0.6605 32 1 5.9377 -0.3770 -1.5164 33 1 6.9359 -1.0282 -0.1926 34 1 6.5483 2.1748 4.2889 35 1 5.2399 2.1840 3.0822 36 1 5.2841 0.9226 4.3374 37 1 6.2296 -2.4643 3.9136 38 1 5.2943 -1.5859 2.6804 39 1 5.3211 -1.0002 4.3611 40 1 8.6385 -3.5733 5.0412 41 1 4.6687 2.3797 0.7679 42 1 4.8595 2.1002 -0.9855 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407975100.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = 30.239197 kcal Electronic energy + Delta-G solvation = -28040.711644 eV Core-core repulsion = 24185.240318 eV Total energy + Delta-G solvation = -3855.471326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30887 -37.55056 -36.98122 -36.30935 -35.46655 -33.75130 -32.68719 -32.28927 -30.19695 -29.22014 -28.66888 -25.83027 -25.50116 -25.25165 -23.84877 -21.10453 -20.79188 -19.98475 -18.51516 -17.61935 -17.20222 -17.01858 -16.43840 -16.32478 -15.75060 -15.01200 -14.85766 -14.51654 -14.20680 -13.79698 -13.64949 -13.45099 -13.29172 -13.15022 -12.88000 -12.71915 -12.51330 -12.17118 -12.05517 -11.93987 -11.83052 -11.57220 -11.51355 -11.35188 -11.31798 -11.06223 -10.89723 -10.57945 -10.38906 -10.13882 -10.06129 -9.82686 -9.49611 -9.31826 -9.24417 -8.55046 -8.11586 -6.16973 -4.23379 0.83058 1.56577 2.20269 2.80595 3.06235 3.22636 3.31241 3.35434 3.72909 3.81976 4.22289 4.32808 4.49946 4.53498 4.69964 4.86222 4.95708 5.13294 5.15320 5.21547 5.26337 5.42042 5.46658 5.51970 5.58243 5.64337 5.78200 6.04198 6.08020 6.25517 6.34426 6.42922 6.51660 6.63081 6.68250 6.72104 6.85434 7.29284 7.50432 7.66397 7.91633 8.08742 8.15670 8.79112 9.43207 10.88820 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.016232 B = 0.004500 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.541632 B = 6220.357845 C = 6900.049585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.213 3.787 3 N -0.535 5.535 4 C 0.268 3.732 5 N -0.361 5.361 6 N -0.313 5.313 7 C 0.101 3.899 8 C 0.108 3.892 9 N -1.020 6.020 10 S 2.776 3.224 11 O -0.983 6.983 12 O -0.962 6.962 13 N -0.987 5.987 14 C 0.109 3.891 15 C 0.268 3.732 16 H 0.059 0.941 17 C -0.149 4.149 18 C -0.520 4.520 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.282 1.282 26 C 0.210 3.790 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.008 0.992 39 H 0.034 0.966 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 3.973 -10.086 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 N -0.264 5.264 4 C -0.011 4.011 5 N -0.151 5.151 6 N -0.142 5.142 7 C -0.022 4.022 8 C -0.019 4.019 9 N -0.857 5.857 10 S 2.786 3.214 11 O -0.967 6.967 12 O -0.945 6.945 13 N -0.830 5.830 14 C -0.037 4.037 15 C 0.165 3.835 16 H 0.076 0.924 17 C -0.208 4.208 18 C -0.560 4.560 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.208 1.208 26 C 0.081 3.919 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.105 0.895 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.027 0.973 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.056 3.807 -10.294 14.886 hybrid contribution 0.404 -0.368 1.032 1.167 sum -9.653 3.440 -9.262 13.813 Atomic orbital electron populations 1.20044 0.83932 1.03956 1.03444 1.24373 0.98161 0.85517 0.98853 1.70104 0.99458 1.30933 1.25895 1.24364 0.94934 0.84530 0.97249 1.50009 1.05642 1.05694 1.53785 1.77942 0.86660 1.22580 1.27055 1.22656 0.79371 0.94392 1.05765 1.21942 0.98943 0.82954 0.98041 1.59009 1.38128 1.27348 1.61183 1.02281 0.73263 0.73196 0.72662 1.93564 1.86771 1.29337 1.86985 1.93614 1.43953 1.74141 1.82839 1.57776 1.66875 1.29043 1.29291 1.21176 0.94403 0.93525 0.94582 1.18770 0.92238 0.75826 0.96665 0.92359 1.22220 0.97149 1.03897 0.97518 1.21336 1.30767 0.93511 1.10343 0.91798 1.24898 0.96151 0.95112 0.97629 1.69846 1.44921 0.97806 1.40301 0.86428 0.80097 0.78330 0.82503 1.19685 1.20975 1.20830 1.19981 0.77214 0.89545 1.05129 0.90097 0.90125 0.89634 0.87443 0.87617 0.89528 0.85516 0.92855 0.93411 0.90949 0.88662 0.97318 0.94669 0.92671 0.86082 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.51 10.51 36.00 0.38 -0.13 16 2 C 0.21 3.00 8.15 -156.43 -1.27 1.72 16 3 N -0.53 -7.97 11.18 -7.99 -0.09 -8.05 16 4 C 0.27 3.81 7.85 -155.77 -1.22 2.58 16 5 N -0.36 -5.23 4.03 -57.98 -0.23 -5.46 16 6 N -0.31 -4.82 12.73 32.50 0.41 -4.40 16 7 C 0.10 1.25 7.48 -3.73 -0.03 1.23 16 8 C 0.11 1.27 6.49 -3.27 -0.02 1.24 16 9 N -1.02 -14.01 3.34 -113.76 -0.38 -14.39 16 10 S 2.78 49.63 6.08 -107.50 -0.65 48.98 16 11 O -0.98 -18.57 16.16 -57.17 -0.92 -19.50 16 12 O -0.96 -20.00 15.34 -57.17 -0.88 -20.88 16 13 N -0.99 -19.15 3.12 -115.85 -0.36 -19.51 16 14 C 0.11 1.88 9.53 59.85 0.57 2.45 16 15 C 0.27 6.09 2.62 -69.08 -0.18 5.91 16 16 H 0.06 1.44 6.91 -51.93 -0.36 1.08 16 17 C -0.15 -3.17 8.95 37.16 0.33 -2.84 16 18 C -0.52 -13.39 8.37 -34.44 -0.29 -13.67 16 19 H 0.06 1.66 7.65 -52.48 -0.40 1.25 16 20 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 21 N -0.89 -23.67 11.32 55.43 0.63 -23.04 16 22 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.21 2.58 6.67 -4.46 -0.03 2.55 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.11 1.50 5.46 -51.93 -0.28 1.22 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.13 1.53 6.98 -51.93 -0.36 1.17 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.69 7.76 -51.93 -0.40 0.29 16 36 H 0.07 1.24 6.43 -51.93 -0.33 0.90 16 37 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 38 H 0.01 0.15 5.46 -51.93 -0.28 -0.13 16 39 H 0.03 0.74 6.66 -51.93 -0.35 0.39 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.12 1.45 7.47 -51.93 -0.39 1.06 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -32.63 348.22 -9.68 -42.31 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.57 Total: 0.54 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.86 Total: 2.63 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -0.02 Total: -74.86 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.80 Total: -40.38 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 49.63 SS G_CDS: -0.65 Total: 48.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.63 -9.68 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975100.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.551 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds