Wall clock time and date at job start Tue Mar 31 2020 05:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33489 * 125.49386 * 2 1 4 4 C 1.30221 * 109.67075 * 180.09852 * 3 2 1 5 5 N 1.34697 * 108.20178 * 359.65267 * 4 3 2 6 6 N 1.30955 * 125.49764 * 179.97438 * 2 1 3 7 7 C 1.46259 * 125.43239 * 180.69928 * 5 4 3 8 8 C 1.53844 * 109.18614 * 341.32879 * 7 5 4 9 9 N 1.47103 * 108.84903 * 45.74712 * 8 7 5 10 10 S 1.65604 * 120.97568 * 116.67764 * 9 8 7 11 11 O 1.42101 * 106.40024 * 156.18021 * 10 9 8 12 12 O 1.42097 * 106.39867 * 23.26730 * 10 9 8 13 13 N 1.65597 * 107.21894 * 269.72514 * 10 9 8 14 14 C 1.46500 * 120.00076 * 269.99600 * 13 10 9 15 15 C 1.46500 * 119.99996 * 90.00242 * 13 10 9 16 16 H 1.09002 * 109.47129 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47473 * 119.99730 * 15 13 10 18 18 C 1.50708 * 109.47008 * 239.99898 * 15 13 10 19 19 H 1.08000 * 119.99723 * 359.97438 * 18 15 13 20 20 C 1.37873 * 119.99930 * 179.97438 * 18 15 13 21 21 N 1.31509 * 120.00195 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99968 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46680 * 60.00159 * 22 20 18 24 24 H 1.48492 * 109.47298 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46944 * 300.00675 * 22 20 18 26 26 C 1.47481 * 118.05094 * 296.41264 * 9 8 7 27 27 H 1.08995 * 109.47066 * 90.00924 * 1 2 3 28 28 H 1.09002 * 109.46994 * 210.00514 * 1 2 3 29 29 H 1.08994 * 109.47377 * 330.00600 * 1 2 3 30 30 H 1.08999 * 109.51374 * 101.39755 * 7 5 4 31 31 H 1.09009 * 109.51239 * 221.55177 * 7 5 4 32 32 H 1.09002 * 109.67920 * 285.93797 * 8 7 5 33 33 H 1.08999 * 109.66503 * 165.55079 * 8 7 5 34 34 H 1.08994 * 109.47032 * 270.00329 * 14 13 10 35 35 H 1.08998 * 109.46624 * 30.00124 * 14 13 10 36 36 H 1.08998 * 109.46783 * 149.99869 * 14 13 10 37 37 H 1.09002 * 109.47153 * 59.99757 * 17 15 13 38 38 H 1.09001 * 109.46832 * 299.99948 * 17 15 13 39 39 H 1.09004 * 109.47261 * 179.97438 * 17 15 13 40 40 H 0.97006 * 120.00358 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.94504 * 162.70430 * 26 9 8 42 42 H 1.08999 * 109.94264 * 283.94281 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2821 1.0868 0.0000 4 6 3.5349 0.7318 -0.0021 5 7 3.5909 -0.6140 0.0042 6 7 2.2674 -1.0662 0.0005 7 6 4.8167 -1.4117 0.0189 8 6 5.9954 -0.5357 -0.4393 9 7 5.9219 0.7601 0.2532 10 16 7.1174 1.2391 1.2943 11 8 7.0621 2.6582 1.3431 12 8 8.2849 0.5192 0.9230 13 7 6.6972 0.7025 2.8035 14 6 5.8906 1.5509 3.6843 15 6 7.1321 -0.6206 3.2579 16 1 7.7169 -1.1003 2.4729 17 6 7.9909 -0.4713 4.5152 18 6 5.9246 -1.4660 3.5718 19 1 4.9325 -1.0582 3.4458 20 6 6.0864 -2.7598 4.0197 21 7 7.2945 -3.2562 4.1736 22 14 4.5897 -3.8074 4.4095 23 1 3.7554 -3.9518 3.1896 24 1 5.0304 -5.1485 4.8699 25 1 3.7933 -3.1541 5.4793 26 6 4.7553 1.6227 -0.0114 27 1 -0.3633 -0.0002 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 5.0019 -1.7761 1.0293 31 1 4.7087 -2.2577 -0.6600 32 1 5.9380 -0.3769 -1.5162 33 1 6.9360 -1.0279 -0.1923 34 1 6.5481 2.1756 4.2888 35 1 5.2398 2.1847 3.0821 36 1 5.2840 0.9235 4.3373 37 1 7.4059 0.0082 5.3000 38 1 8.8643 0.1401 4.2881 39 1 8.3142 -1.4558 4.8535 40 1 7.4084 -4.1664 4.4891 41 1 4.6686 2.3800 0.7677 42 1 4.8595 2.1004 -0.9856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407975102.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:43 Heat of formation + Delta-G solvation = 25.925894 kcal Electronic energy + Delta-G solvation = -28385.229681 eV Core-core repulsion = 24529.571316 eV Total energy + Delta-G solvation = -3855.658365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.13514 -37.38443 -36.98970 -36.28944 -35.49235 -33.57427 -32.74878 -32.13844 -30.00398 -29.20931 -28.54189 -25.71507 -25.38770 -25.29234 -23.66215 -20.96222 -20.73948 -19.93703 -18.45090 -17.47931 -17.15877 -16.81658 -16.51067 -16.21237 -15.64773 -14.98552 -14.71930 -14.46444 -14.05416 -13.72148 -13.54987 -13.34380 -13.20567 -13.00392 -12.83850 -12.58373 -12.40890 -12.13646 -11.97058 -11.88089 -11.75142 -11.56056 -11.46737 -11.33698 -11.29913 -11.07812 -10.96699 -10.56359 -10.33858 -10.22098 -9.90587 -9.69116 -9.45571 -9.21846 -9.11659 -8.61277 -8.11752 -6.23308 -4.32981 0.88747 1.74928 2.39488 2.94922 3.08858 3.17787 3.23701 3.28305 3.81599 3.91006 4.24162 4.41213 4.57295 4.66520 4.83704 5.02839 5.05949 5.11040 5.30178 5.31108 5.46956 5.51748 5.53017 5.67781 5.75297 5.88093 5.98745 6.06984 6.19555 6.24839 6.49380 6.56891 6.59039 6.75612 6.78502 6.90864 6.98881 7.31886 7.48041 7.63918 7.91116 8.11670 8.24969 8.70848 9.34662 10.80854 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.007228 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.768552 B = 3873.160771 C = 5662.615117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.208 3.792 3 N -0.537 5.537 4 C 0.265 3.735 5 N -0.354 5.354 6 N -0.312 5.312 7 C 0.101 3.899 8 C 0.114 3.886 9 N -1.016 6.016 10 S 2.780 3.220 11 O -0.986 6.986 12 O -0.969 6.969 13 N -0.987 5.987 14 C 0.107 3.893 15 C 0.268 3.732 16 H 0.059 0.941 17 C -0.144 4.144 18 C -0.530 4.530 19 H 0.060 0.940 20 C 0.070 3.930 21 N -0.882 5.882 22 Si 0.890 3.110 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.277 1.277 26 C 0.212 3.788 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.013 0.987 39 H 0.093 0.907 40 H 0.266 0.734 41 H 0.119 0.881 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 5.839 -8.051 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 N -0.266 5.266 4 C -0.014 4.014 5 N -0.144 5.144 6 N -0.141 5.141 7 C -0.023 4.023 8 C -0.013 4.013 9 N -0.853 5.853 10 S 2.790 3.210 11 O -0.970 6.970 12 O -0.953 6.953 13 N -0.830 5.830 14 C -0.040 4.040 15 C 0.165 3.835 16 H 0.076 0.924 17 C -0.204 4.204 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.133 4.133 21 N -0.520 5.520 22 Si 0.717 3.283 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.203 1.203 26 C 0.083 3.917 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.032 0.968 39 H 0.112 0.888 40 H 0.076 0.924 41 H 0.137 0.863 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.472 5.680 -8.230 11.399 hybrid contribution -1.003 -1.016 0.497 1.512 sum -6.475 4.664 -7.733 11.112 Atomic orbital electron populations 1.20017 0.84097 1.03843 1.03288 1.24332 0.98096 0.85600 0.99310 1.70076 0.99473 1.30966 1.26121 1.24292 0.94851 0.84613 0.97626 1.49999 1.05679 1.05657 1.53062 1.77944 0.86785 1.22612 1.26745 1.22648 0.78881 0.93935 1.06796 1.21896 0.99226 0.82772 0.97444 1.58806 1.37883 1.27410 1.61154 1.02097 0.73285 0.72962 0.72674 1.93564 1.86960 1.29448 1.87003 1.93594 1.44546 1.74297 1.82910 1.57785 1.66670 1.28790 1.29745 1.21210 0.94573 0.93398 0.94799 1.18757 0.94271 0.76003 0.94450 0.92381 1.22047 0.97029 1.02574 0.98758 1.21286 0.92527 0.97114 1.46024 0.92189 1.24872 0.95806 0.97664 0.94996 1.69856 1.20614 1.16117 1.45369 0.86692 0.82925 0.79537 0.79134 1.20037 1.21093 1.20267 1.19940 0.77363 0.89517 1.04835 0.90221 0.90229 0.89744 0.86025 0.88059 0.89945 0.85636 0.93507 0.93308 0.90169 0.94816 0.96806 0.88844 0.92404 0.86289 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.58 10.51 36.01 0.38 -0.21 16 2 C 0.21 3.31 8.15 -156.43 -1.27 2.03 16 3 N -0.54 -8.81 11.18 -7.99 -0.09 -8.90 16 4 C 0.26 4.19 7.85 -155.77 -1.22 2.96 16 5 N -0.35 -5.90 4.03 -57.99 -0.23 -6.14 16 6 N -0.31 -5.49 12.73 32.50 0.41 -5.08 16 7 C 0.10 1.50 7.48 -3.73 -0.03 1.47 16 8 C 0.11 1.51 6.49 -3.27 -0.02 1.48 16 9 N -1.02 -15.01 3.34 -113.75 -0.38 -15.39 16 10 S 2.78 49.58 6.08 -107.50 -0.65 48.92 16 11 O -0.99 -18.34 16.16 -57.17 -0.92 -19.26 16 12 O -0.97 -19.61 15.34 -57.17 -0.88 -20.49 16 13 N -0.99 -18.99 3.12 -115.85 -0.36 -19.35 16 14 C 0.11 1.82 9.28 59.85 0.56 2.38 16 15 C 0.27 6.01 2.62 -69.08 -0.18 5.83 16 16 H 0.06 1.41 6.91 -51.93 -0.36 1.05 16 17 C -0.14 -3.25 8.97 37.16 0.33 -2.91 16 18 C -0.53 -12.63 7.21 -34.44 -0.25 -12.88 16 19 H 0.06 1.45 7.33 -52.49 -0.38 1.07 16 20 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -22.77 11.32 55.43 0.63 -22.14 16 22 Si 0.89 19.93 29.54 -169.99 -5.02 14.91 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C 0.21 2.84 6.67 -4.46 -0.03 2.81 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.12 2.17 7.35 -51.93 -0.38 1.79 16 31 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.13 1.71 6.98 -51.93 -0.36 1.34 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 36 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 37 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 40 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 41 H 0.12 1.54 7.47 -51.93 -0.39 1.15 16 42 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 352.70 15.07 5.32 5.32 Total: -1.00 -31.12 352.70 -9.89 -41.01 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.87 Total: 1.95 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.83 Total: 4.62 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -0.02 Total: -76.99 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.80 Total: -39.75 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 49.58 SS G_CDS: -0.65 Total: 48.92 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.12 -9.89 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407975102.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.940 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds