Wall clock time and date at job start Tue Mar 31 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33475 * 125.49839 * 2 1 4 4 C 1.30332 * 109.72738 * 180.02562 * 3 2 1 5 5 N 1.34681 * 108.03906 * 359.92208 * 4 3 2 6 6 N 1.30977 * 125.49417 * 180.02562 * 2 1 3 7 7 C 1.46306 * 125.04673 * 180.15466 * 5 4 3 8 8 C 1.53384 * 108.79714 * 17.00280 * 7 5 4 9 9 H 1.09008 * 109.44474 * 69.87169 * 8 7 5 10 10 N 1.46498 * 109.53545 * 189.88657 * 8 7 5 11 11 S 1.65599 * 120.00165 * 263.91113 * 10 8 7 12 12 O 1.42103 * 106.40288 * 49.01804 * 11 10 8 13 13 O 1.42096 * 106.40433 * 181.93920 * 11 10 8 14 14 N 1.65607 * 107.21784 * 295.47809 * 11 10 8 15 15 C 1.46491 * 119.99834 * 275.60628 * 14 11 10 16 16 C 1.46500 * 119.99723 * 95.60062 * 14 11 10 17 17 C 1.50698 * 109.46611 * 96.51687 * 16 14 11 18 18 H 1.08001 * 120.00470 * 5.05027 * 17 16 14 19 19 C 1.37881 * 119.99949 * 185.05266 * 17 16 14 20 20 N 1.31513 * 120.00290 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99809 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47600 * 89.99905 * 21 19 17 23 23 H 1.48506 * 109.47108 * 209.99939 * 21 19 17 24 24 H 1.48504 * 109.47300 * 329.99608 * 21 19 17 25 25 C 1.53159 * 109.44647 * 309.90842 * 8 7 5 26 26 C 1.50924 * 127.90880 * 179.97438 * 4 3 2 27 27 H 1.08996 * 109.47490 * 89.97288 * 1 2 3 28 28 H 1.08999 * 109.47442 * 209.97682 * 1 2 3 29 29 H 1.09002 * 109.47133 * 329.97130 * 1 2 3 30 30 H 1.08998 * 109.58901 * 136.80586 * 7 5 4 31 31 H 1.08999 * 109.58929 * 257.23669 * 7 5 4 32 32 H 0.96998 * 120.00063 * 83.90482 * 10 8 7 33 33 H 1.08997 * 109.47301 * 89.99921 * 15 14 11 34 34 H 1.09000 * 109.47285 * 209.99610 * 15 14 11 35 35 H 1.08996 * 109.47382 * 329.99776 * 15 14 11 36 36 H 1.08998 * 109.47282 * 216.51308 * 16 14 11 37 37 H 1.08994 * 109.47309 * 336.51799 * 16 14 11 38 38 H 0.97001 * 120.00094 * 180.02562 * 20 19 17 39 39 H 1.09000 * 109.50809 * 309.18861 * 25 8 7 40 40 H 1.09008 * 109.50136 * 189.10065 * 25 8 7 41 41 H 1.09001 * 109.71558 * 76.24305 * 26 4 3 42 42 H 1.09000 * 109.71682 * 315.59928 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7324 -0.0005 5 7 3.5895 -0.6133 0.0008 6 7 2.2674 -1.0664 -0.0005 7 6 4.8196 -1.4054 0.0040 8 6 5.9861 -0.5051 0.4300 9 1 5.8849 -0.2556 1.4863 10 7 7.2525 -1.2091 0.2139 11 16 7.9735 -2.0194 1.4653 12 8 6.9632 -2.8249 2.0569 13 8 9.1888 -2.5486 0.9535 14 7 8.3965 -0.8908 2.6011 15 6 9.6612 -0.1625 2.4743 16 6 7.5058 -0.6208 3.7325 17 6 7.9565 -1.4197 4.9282 18 1 8.8657 -2.0004 4.8782 19 6 7.2079 -1.4093 6.0861 20 7 7.6009 -2.1069 7.1294 21 14 5.6349 -0.4056 6.1723 22 1 4.4891 -1.2422 5.7338 23 1 5.4120 0.0462 7.5693 24 1 5.7531 0.7775 5.2825 25 6 5.9683 0.7805 -0.4022 26 6 4.7523 1.6263 -0.0013 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8897 0.5143 30 1 4.7202 -2.2320 0.7075 31 1 5.0060 -1.7949 -0.9968 32 1 7.6687 -1.2007 -0.6622 33 1 9.5003 0.7469 1.8954 34 1 10.0311 0.0986 3.4658 35 1 10.3933 -0.7911 1.9674 36 1 7.5361 0.4418 3.9732 37 1 6.4871 -0.9048 3.4688 38 1 7.0741 -2.0998 7.9439 39 1 5.9040 0.5282 -1.4606 40 1 6.8816 1.3462 -0.2176 41 1 4.9045 2.0409 0.9952 42 1 4.6140 2.4347 -0.7193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408004978.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:10 Heat of formation + Delta-G solvation = 14.771929 kcal Electronic energy + Delta-G solvation = -27321.311906 eV Core-core repulsion = 23465.169869 eV Total energy + Delta-G solvation = -3856.142037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43393 -38.20669 -36.83497 -35.79557 -35.41835 -33.98111 -33.39130 -32.47889 -31.19300 -29.43496 -28.51483 -27.46657 -25.32987 -24.38785 -22.80232 -22.02358 -20.77904 -20.08641 -19.14163 -17.52165 -17.15775 -17.08216 -16.73499 -16.40447 -15.93325 -15.29998 -15.13118 -14.54473 -14.36985 -14.25096 -13.84217 -13.58517 -13.37290 -13.28493 -12.91389 -12.77344 -12.68684 -12.47035 -12.26448 -12.01607 -11.95533 -11.85843 -11.66640 -11.48283 -11.40320 -11.38959 -11.26238 -10.77997 -10.58138 -10.36497 -10.10330 -9.89281 -9.76312 -9.64312 -9.35788 -8.67380 -8.28886 -6.17011 -4.17615 0.86150 1.52241 2.13387 2.77232 3.15247 3.22307 3.25828 3.31037 3.71373 3.82250 4.01093 4.21874 4.30644 4.37377 4.54819 4.65374 4.75304 4.87391 5.02840 5.04656 5.14731 5.27438 5.36788 5.39256 5.41465 5.48773 5.56234 5.62032 5.70376 5.73854 5.81498 6.09039 6.25460 6.32594 6.37875 6.54959 6.66187 6.78522 6.90706 7.24047 7.47368 8.04121 8.38853 8.87292 9.41840 10.96263 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.005051 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.139366 B = 5542.456401 C = 7022.207622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.213 3.787 3 N -0.538 5.538 4 C 0.274 3.726 5 N -0.369 5.369 6 N -0.311 5.311 7 C 0.108 3.892 8 C 0.144 3.856 9 H 0.103 0.897 10 N -1.124 6.124 11 S 2.777 3.223 12 O -0.958 6.958 13 O -0.985 6.985 14 N -0.989 5.989 15 C 0.094 3.906 16 C 0.226 3.774 17 C -0.538 4.538 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.891 5.891 21 Si 0.869 3.131 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.265 1.265 25 C -0.132 4.132 26 C -0.040 4.040 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.415 0.585 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 9.357 -17.930 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.069 4.069 3 N -0.267 5.267 4 C -0.003 4.003 5 N -0.160 5.160 6 N -0.139 5.139 7 C -0.016 4.016 8 C 0.034 3.966 9 H 0.120 0.880 10 N -0.880 5.880 11 S 2.785 3.215 12 O -0.941 6.941 13 O -0.969 6.969 14 N -0.831 5.831 15 C -0.052 4.052 16 C 0.102 3.898 17 C -0.577 4.577 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.529 5.529 21 Si 0.695 3.305 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.171 4.171 26 C -0.081 4.081 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.113 0.887 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.720 7.868 -17.481 20.005 hybrid contribution -0.458 0.708 -0.098 0.849 sum -6.178 8.576 -17.579 20.512 Atomic orbital electron populations 1.20060 0.83913 1.04054 1.03480 1.24417 0.98245 0.85537 0.98689 1.70152 0.99781 1.30863 1.25906 1.24300 0.95108 0.84026 0.96836 1.50080 1.05690 1.05778 1.54478 1.77974 0.86497 1.22525 1.26946 1.22535 0.78907 0.95308 1.04883 1.20924 0.82611 0.91241 1.01859 0.87957 1.56402 1.31856 1.71658 1.28122 1.02219 0.73342 0.73589 0.72382 1.93649 1.59637 1.64842 1.75973 1.93571 1.45551 1.77216 1.80530 1.57369 1.28895 1.59228 1.37625 1.21397 0.84979 0.95290 1.03534 1.19490 0.88204 0.97479 0.84581 1.21334 1.11190 1.29699 0.95466 0.90254 1.24855 0.97330 0.94964 0.95495 1.69882 1.39139 1.40399 1.03446 0.86982 0.84560 0.80997 0.77953 1.19728 1.20727 1.18997 1.22088 0.99207 0.95218 1.00633 1.20386 0.86429 0.95849 1.05397 0.90047 0.90017 0.89614 0.86832 0.88735 0.75199 0.93954 0.89936 0.91316 0.94825 0.95342 0.92365 0.90105 0.88146 0.87577 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.00 0.38 -0.16 16 2 C 0.21 3.04 8.15 -156.43 -1.27 1.76 16 3 N -0.54 -7.83 11.18 -8.03 -0.09 -7.92 16 4 C 0.27 3.58 7.72 -155.78 -1.20 2.38 16 5 N -0.37 -5.29 4.04 -58.25 -0.24 -5.52 16 6 N -0.31 -4.93 12.74 32.50 0.41 -4.51 16 7 C 0.11 1.36 6.91 -3.95 -0.03 1.33 16 8 C 0.14 1.60 2.71 -67.65 -0.18 1.42 16 9 H 0.10 1.32 6.89 -51.92 -0.36 0.97 16 10 N -1.12 -12.63 5.53 -4.65 -0.03 -12.65 16 11 S 2.78 48.25 6.01 -107.50 -0.65 47.60 16 12 O -0.96 -20.67 16.51 -57.17 -0.94 -21.62 16 13 O -0.98 -18.67 16.86 -57.17 -0.96 -19.63 16 14 N -0.99 -18.05 3.23 -123.07 -0.40 -18.45 16 15 C 0.09 1.40 10.70 59.84 0.64 2.04 16 16 C 0.23 4.96 3.93 -5.19 -0.02 4.94 16 17 C -0.54 -14.81 9.93 -34.44 -0.34 -15.15 16 18 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 21 Si 0.87 20.87 27.37 -169.99 -4.65 16.22 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -5.81 6.69 56.52 0.38 -5.43 16 25 C -0.13 -0.98 5.50 -26.42 -0.15 -1.13 16 26 C -0.04 -0.34 6.33 -27.54 -0.17 -0.52 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 1.67 7.99 -51.93 -0.41 1.26 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.41 3.31 8.85 -34.47 -0.30 3.00 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 35 H 0.07 0.98 7.08 -51.93 -0.37 0.61 16 36 H 0.03 0.69 7.53 -51.93 -0.39 0.30 16 37 H 0.03 0.63 5.76 -51.93 -0.30 0.34 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -37.60 357.97 -9.76 -47.36 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.94 Total: 0.93 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.45 Total: -1.00 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: 0.44 Total: -75.25 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -1.91 Total: -41.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.65 Total: 16.22 kcal Atomic # 16 Polarization: 48.25 SS G_CDS: -0.65 Total: 47.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.60 -9.76 -47.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408004978.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.133 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds