Wall clock time and date at job start Tue Mar 31 2020 05:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33472 * 125.49095 * 2 1 4 4 C 1.30334 * 109.72701 * 180.02562 * 3 2 1 5 5 N 1.34684 * 108.03871 * 0.07391 * 4 3 2 6 6 N 1.30966 * 125.50347 * 180.02562 * 2 1 3 7 7 C 1.46304 * 125.04431 * 179.85778 * 5 4 3 8 8 C 1.53307 * 108.79104 * 342.94555 * 7 5 4 9 9 H 1.08995 * 109.45614 * 290.13112 * 8 7 5 10 10 N 1.46500 * 109.49075 * 170.12878 * 8 7 5 11 11 S 1.65603 * 119.99406 * 94.98499 * 10 8 7 12 12 O 1.42107 * 106.39801 * 178.53909 * 11 10 8 13 13 O 1.42098 * 106.40568 * 311.45946 * 11 10 8 14 14 N 1.65598 * 107.21586 * 65.00192 * 11 10 8 15 15 C 1.46503 * 119.99797 * 89.99952 * 14 11 10 16 16 C 1.46491 * 120.00144 * 269.99352 * 14 11 10 17 17 C 1.50698 * 109.47240 * 95.00345 * 16 14 11 18 18 H 1.08008 * 119.99883 * 359.97438 * 17 16 14 19 19 C 1.37877 * 120.00414 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99947 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99939 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47190 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46927 * 120.00038 * 21 19 17 24 24 H 1.48502 * 109.47108 * 239.99687 * 21 19 17 25 25 C 1.53164 * 109.47322 * 50.12216 * 8 7 5 26 26 C 1.50928 * 127.90880 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.47100 * 89.98313 * 1 2 3 28 28 H 1.09000 * 109.46763 * 209.97595 * 1 2 3 29 29 H 1.08991 * 109.47629 * 329.97493 * 1 2 3 30 30 H 1.09001 * 109.58599 * 102.76729 * 7 5 4 31 31 H 1.09003 * 109.58122 * 223.19437 * 7 5 4 32 32 H 0.96996 * 120.00471 * 274.99151 * 10 8 7 33 33 H 1.09002 * 109.47074 * 89.99797 * 15 14 11 34 34 H 1.09005 * 109.46758 * 209.99597 * 15 14 11 35 35 H 1.09000 * 109.47626 * 329.99692 * 15 14 11 36 36 H 1.09002 * 109.47702 * 215.00634 * 16 14 11 37 37 H 1.09003 * 109.47437 * 335.00820 * 16 14 11 38 38 H 0.97000 * 120.00227 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.50639 * 170.90583 * 25 8 7 40 40 H 1.09003 * 109.50737 * 50.82168 * 25 8 7 41 41 H 1.08993 * 109.71502 * 44.43945 * 26 4 3 42 42 H 1.09004 * 109.74766 * 283.81544 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2819 1.0867 0.0000 4 6 3.5362 0.7327 -0.0005 5 7 3.5897 -0.6131 -0.0026 6 7 2.2676 -1.0662 -0.0005 7 6 4.8199 -1.4050 -0.0067 8 6 5.9850 -0.5050 -0.4340 9 1 5.8828 -0.2556 -1.4902 10 7 7.2513 -1.2096 -0.2190 11 16 7.9567 -2.0432 -1.4640 12 8 9.1701 -2.5775 -0.9525 13 8 6.9351 -2.8465 -2.0388 14 7 8.3835 -0.9338 -2.6170 15 6 9.7068 -0.3066 -2.5756 16 6 7.4379 -0.5796 -3.6783 17 6 6.6785 0.6601 -3.2815 18 1 6.8799 1.1363 -2.3332 19 6 5.7260 1.1858 -4.1284 20 7 5.4798 0.6052 -5.2824 21 14 4.7843 2.7221 -3.6360 22 1 5.2445 3.1779 -2.2997 23 1 5.0281 3.7936 -4.6350 24 1 3.3320 2.4166 -3.5824 25 6 5.9688 0.7809 0.3980 26 6 4.7521 1.6268 -0.0002 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5142 30 1 5.0068 -1.7950 0.9938 31 1 4.7200 -2.2313 -0.7106 32 1 7.6765 -1.1880 0.6525 33 1 10.4112 -0.9060 -3.1524 34 1 9.6477 0.6949 -3.0018 35 1 10.0462 -0.2420 -1.5418 36 1 7.9834 -0.3911 -4.6030 37 1 6.7380 -1.4012 -3.8305 38 1 4.8100 0.9752 -5.8785 39 1 6.8818 1.3464 0.2119 40 1 5.9063 0.5286 1.4566 41 1 4.6146 2.4343 0.7187 42 1 4.9035 2.0430 -0.9962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408004979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:15 Heat of formation + Delta-G solvation = 9.779692 kcal Electronic energy + Delta-G solvation = -28203.877180 eV Core-core repulsion = 24347.518663 eV Total energy + Delta-G solvation = -3856.358517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07413 -37.82972 -36.73905 -35.64260 -35.37887 -33.63273 -33.02263 -32.67601 -30.87692 -29.08871 -27.99782 -27.11165 -25.23745 -24.00844 -22.53594 -22.35147 -20.44835 -19.65369 -18.93809 -17.42174 -16.96821 -16.76454 -16.42907 -16.07049 -15.67653 -15.12905 -14.93981 -14.42389 -14.08878 -13.93613 -13.66742 -13.43860 -13.21973 -13.01320 -12.60789 -12.52180 -12.48025 -12.32915 -11.97696 -11.87540 -11.78967 -11.63583 -11.55741 -11.31868 -11.24569 -11.08848 -10.89724 -10.68198 -10.58133 -10.10020 -9.90196 -9.76997 -9.52673 -9.35280 -8.97616 -8.67225 -8.21758 -6.30276 -4.38872 1.08084 1.87433 2.48956 3.08455 3.13171 3.16015 3.27290 3.34642 3.98302 4.10381 4.18188 4.44244 4.68485 4.73982 4.91863 4.95761 5.02426 5.15535 5.28690 5.41736 5.42358 5.57569 5.63498 5.63774 5.78604 5.83418 5.90434 5.97625 6.03064 6.05917 6.17815 6.31202 6.44395 6.59913 6.70863 7.00923 7.08509 7.20254 7.27802 7.47912 7.65820 7.94377 8.38665 8.65545 9.27270 10.76748 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.006329 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.936851 B = 4423.011965 C = 5762.052045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.210 3.790 3 N -0.543 5.543 4 C 0.285 3.715 5 N -0.365 5.365 6 N -0.315 5.315 7 C 0.112 3.888 8 C 0.117 3.883 9 H 0.151 0.849 10 N -1.117 6.117 11 S 2.784 3.216 12 O -0.996 6.996 13 O -0.975 6.975 14 N -0.995 5.995 15 C 0.106 3.894 16 C 0.239 3.761 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.877 5.877 21 Si 0.876 3.124 22 H -0.258 1.258 23 H -0.280 1.280 24 H -0.277 1.277 25 C -0.124 4.124 26 C -0.055 4.055 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.409 0.591 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.267 0.733 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 1.605 11.183 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.072 4.072 3 N -0.272 5.272 4 C 0.008 3.992 5 N -0.155 5.155 6 N -0.145 5.145 7 C -0.012 4.012 8 C 0.009 3.991 9 H 0.168 0.832 10 N -0.874 5.874 11 S 2.791 3.209 12 O -0.980 6.980 13 O -0.958 6.958 14 N -0.838 5.838 15 C -0.040 4.040 16 C 0.117 3.883 17 C -0.594 4.594 18 H 0.087 0.913 19 C -0.134 4.134 20 N -0.513 5.513 21 Si 0.704 3.296 22 H -0.183 1.183 23 H -0.206 1.206 24 H -0.202 1.202 25 C -0.164 4.164 26 C -0.094 4.094 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.242 0.758 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.151 0.152 10.752 10.754 hybrid contribution -0.201 1.290 0.482 1.392 sum -0.050 1.442 11.234 11.326 Atomic orbital electron populations 1.20022 0.84193 1.03507 1.03566 1.24339 0.98110 0.85730 0.99020 1.70135 0.99891 1.30835 1.26306 1.24236 0.94914 0.84044 0.95976 1.49997 1.05527 1.05755 1.54253 1.77870 0.86669 1.22571 1.27364 1.22488 0.79413 0.95451 1.03856 1.21658 0.81261 0.90158 1.06046 0.83204 1.56064 1.32483 1.70973 1.27839 1.01887 0.72757 0.73648 0.72583 1.93565 1.46066 1.77861 1.80535 1.93600 1.59112 1.65995 1.77101 1.57574 1.22812 1.60936 1.42470 1.21241 0.82977 0.99130 1.00689 1.19294 0.87058 0.96589 0.85345 1.21579 1.21116 1.11750 1.04915 0.91252 1.24965 0.96615 0.97049 0.94774 1.69919 1.32630 1.39527 1.09249 0.86894 0.80599 0.83218 0.78895 1.18340 1.20645 1.20222 1.21952 0.99032 0.95724 0.99677 1.20679 0.86713 0.95832 1.06224 0.90032 0.90299 0.89874 0.89661 0.87285 0.75802 0.93645 0.90620 0.92750 0.94065 0.93013 0.92304 0.88478 0.91041 0.87803 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.66 10.51 36.00 0.38 -0.29 16 2 C 0.21 3.70 8.15 -156.44 -1.27 2.43 16 3 N -0.54 -10.22 11.18 -8.03 -0.09 -10.31 16 4 C 0.28 5.11 7.72 -155.77 -1.20 3.91 16 5 N -0.36 -6.66 4.04 -58.28 -0.24 -6.90 16 6 N -0.32 -5.99 12.74 32.50 0.41 -5.58 16 7 C 0.11 1.82 6.90 -3.99 -0.03 1.79 16 8 C 0.12 1.83 2.41 -67.69 -0.16 1.67 16 9 H 0.15 2.89 4.23 -51.93 -0.22 2.67 16 10 N -1.12 -15.68 5.53 -4.68 -0.03 -15.70 16 11 S 2.78 49.87 6.01 -107.50 -0.65 49.22 16 12 O -1.00 -18.67 17.21 -57.17 -0.98 -19.66 16 13 O -0.97 -20.86 16.18 -57.17 -0.92 -21.79 16 14 N -1.00 -18.56 3.23 -123.05 -0.40 -18.96 16 15 C 0.11 1.63 10.31 59.85 0.62 2.25 16 16 C 0.24 5.44 5.28 -5.20 -0.03 5.42 16 17 C -0.55 -12.89 6.91 -34.44 -0.24 -13.12 16 18 H 0.07 1.48 6.95 -52.48 -0.36 1.11 16 19 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 20 N -0.88 -23.78 13.29 55.43 0.74 -23.04 16 21 Si 0.88 19.24 27.97 -169.99 -4.75 14.49 16 22 H -0.26 -5.02 5.55 56.52 0.31 -4.71 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.12 -1.58 5.49 -26.42 -0.15 -1.72 16 26 C -0.05 -0.81 6.34 -27.54 -0.17 -0.99 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 1.96 7.87 -51.93 -0.41 1.55 16 32 H 0.41 4.32 8.84 -34.47 -0.30 4.01 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 36 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 37 H 0.05 1.32 6.91 -51.93 -0.36 0.96 16 38 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.11 1.94 4.45 -51.93 -0.23 1.71 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -32.42 349.25 -9.73 -42.15 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.74 Total: 7.78 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.35 Total: 3.03 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: 0.40 Total: -80.49 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.91 Total: -41.45 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.75 Total: 14.49 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.65 Total: 49.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.42 -9.73 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408004979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.933 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds