Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46495 * 120.00097 * 2 1 4 4 C 1.50703 * 109.47395 * 275.00479 * 3 2 1 5 5 H 1.07994 * 119.99603 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00380 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99848 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47261 * 239.99776 * 8 6 4 11 11 H 1.48500 * 109.47454 * 119.99769 * 8 6 4 12 12 S 1.65610 * 119.99979 * 180.02562 * 2 1 3 13 13 O 1.42096 * 106.39850 * 23.53338 * 12 2 1 14 14 O 1.42096 * 106.39929 * 156.45689 * 12 2 1 15 15 N 1.65597 * 107.21530 * 269.99712 * 12 2 1 16 16 C 1.46928 * 120.62923 * 269.71751 * 15 12 2 17 17 C 1.53626 * 108.54249 * 126.37046 * 16 15 12 18 18 C 1.53040 * 109.24165 * 54.85637 * 17 16 15 19 19 C 1.53036 * 109.53671 * 298.50945 * 18 17 16 20 20 H 1.09001 * 109.50139 * 301.41224 * 19 18 17 21 21 N 1.46500 * 109.49483 * 181.31453 * 19 18 17 22 22 C 1.35311 * 125.87172 * 325.16511 * 21 19 18 23 23 C 1.35346 * 106.17898 * 179.97438 * 22 21 19 24 24 N 1.33776 * 106.49379 * 0.02562 * 23 22 21 25 25 N 1.28632 * 108.88750 * 359.73258 * 24 23 22 26 26 C 1.46922 * 120.63304 * 90.00003 * 15 12 2 27 27 H 1.08996 * 109.47311 * 89.99845 * 1 2 3 28 28 H 1.09007 * 109.46980 * 209.99766 * 1 2 3 29 29 H 1.08999 * 109.46910 * 329.98971 * 1 2 3 30 30 H 1.09005 * 109.47411 * 155.00413 * 3 2 1 31 31 H 1.08998 * 109.46900 * 35.00492 * 3 2 1 32 32 H 0.97001 * 119.99667 * 0.02562 * 7 6 4 33 33 H 1.08996 * 109.58882 * 246.20697 * 16 15 12 34 34 H 1.08998 * 109.58680 * 6.62997 * 16 15 12 35 35 H 1.08998 * 109.63340 * 294.86222 * 17 16 15 36 36 H 1.09006 * 109.42995 * 174.73034 * 17 16 15 37 37 H 1.09000 * 109.45598 * 178.49237 * 18 17 16 38 38 H 1.09001 * 109.45764 * 58.53306 * 18 17 16 39 39 H 1.07996 * 126.91138 * 0.02562 * 22 21 19 40 40 H 1.08003 * 126.75693 * 179.97438 * 23 22 21 41 41 H 1.09005 * 109.58475 * 353.37111 * 26 15 12 42 42 H 1.08994 * 109.58898 * 113.79822 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1936 -2.2331 6 6 3.0006 2.9504 -1.6663 7 7 3.5034 3.6469 -0.6705 8 14 3.1783 3.5669 -3.4207 9 1 2.5298 2.6076 -4.3506 10 1 4.6191 3.6870 -3.7596 11 1 2.5277 4.8958 -3.5467 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8593 1.5810 16 6 3.7468 -1.4245 2.2943 17 6 3.3215 -0.7161 3.5894 18 6 2.4149 -1.6462 4.3987 19 6 1.1561 -1.9656 3.5892 20 1 0.6352 -1.0396 3.3458 21 7 0.2745 -2.8307 4.3771 22 6 0.6730 -3.7931 5.2407 23 6 -0.4580 -4.3395 5.7446 24 7 -1.4798 -3.6935 5.1717 25 7 -1.0124 -2.8022 4.3707 26 6 1.5541 -2.6836 2.2957 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.1858 1.1177 0.4343 31 1 1.6501 2.0042 0.5895 32 1 3.4108 3.3269 0.2405 33 1 4.3616 -2.2920 2.5340 34 1 4.3126 -0.7350 1.6678 35 1 2.7804 0.1982 3.3460 36 1 4.2069 -0.4701 4.1757 37 1 2.1326 -1.1572 5.3311 38 1 2.9483 -2.5705 4.6206 39 1 1.6893 -4.0691 5.4803 40 1 -0.5229 -5.1402 6.4665 41 1 0.6727 -2.8251 1.6702 42 1 1.9937 -3.6517 2.5356 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425199832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = 30.165459 kcal Electronic energy + Delta-G solvation = -27586.972711 eV Core-core repulsion = 23731.498187 eV Total energy + Delta-G solvation = -3855.474524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.48736 -39.02386 -36.94450 -35.78202 -35.41220 -34.71237 -32.70589 -32.46469 -31.22695 -30.31307 -27.57892 -25.17459 -24.85808 -24.52549 -22.99853 -22.55103 -21.93995 -20.54707 -18.88185 -18.09351 -17.50716 -17.02911 -16.81743 -16.59409 -15.84121 -15.35143 -15.03321 -14.91398 -14.50822 -14.12554 -14.06468 -13.81489 -13.73678 -13.45071 -13.19348 -12.64069 -12.37642 -12.23684 -12.03315 -11.95635 -11.83505 -11.75892 -11.49091 -11.38428 -11.35154 -11.20806 -11.07476 -10.98374 -10.72184 -10.61358 -10.35863 -10.15149 -9.61927 -9.43343 -9.25335 -8.45452 -8.05971 -6.47303 -4.19352 0.84688 1.38980 2.01915 2.39444 3.17091 3.41795 3.45504 3.59848 3.79093 3.87434 4.15376 4.24975 4.41338 4.48066 4.55564 4.68866 4.72952 4.78551 4.85549 4.97280 5.04707 5.20140 5.23756 5.27938 5.36018 5.41217 5.50228 5.51942 5.57264 5.85388 5.88706 5.91004 5.94522 6.10034 6.25112 6.33199 6.44035 6.75532 7.04731 7.30664 7.91381 8.32039 8.37527 8.72234 9.49275 10.90843 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.021460 B = 0.003606 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.425934 B = 7763.867896 C = 7873.526912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.991 5.991 3 C 0.248 3.752 4 C -0.608 4.608 5 H 0.055 0.945 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 1.074 2.926 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.286 1.286 12 S 2.778 3.222 13 O -0.988 6.988 14 O -0.954 6.954 15 N -1.008 6.008 16 C 0.115 3.885 17 C -0.131 4.131 18 C -0.122 4.122 19 C 0.126 3.874 20 H 0.121 0.879 21 N -0.282 5.282 22 C -0.049 4.049 23 C -0.054 4.054 24 N -0.274 5.274 25 N -0.082 5.082 26 C 0.120 3.880 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.188 0.812 40 H 0.189 0.811 41 H 0.100 0.900 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 -12.802 14.357 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.834 5.834 3 C 0.126 3.874 4 C -0.648 4.648 5 H 0.074 0.926 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.212 1.212 12 S 2.787 3.213 13 O -0.972 6.972 14 O -0.937 6.937 15 N -0.845 5.845 16 C -0.010 4.010 17 C -0.170 4.170 18 C -0.161 4.161 19 C 0.023 3.977 20 H 0.139 0.861 21 N -0.076 5.076 22 C -0.200 4.200 23 C -0.212 4.212 24 N -0.139 5.139 25 N -0.061 5.061 26 C -0.008 4.008 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.205 0.795 40 H 0.206 0.794 41 H 0.118 0.882 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.292 -11.374 12.051 16.621 hybrid contribution 0.273 -1.516 1.766 2.344 sum -1.019 -12.890 13.817 18.923 Atomic orbital electron populations 1.21246 0.79619 1.01190 1.01869 1.57570 1.14432 1.22961 1.88424 1.19141 0.90275 0.79541 0.98453 1.22348 1.40216 1.09624 0.92596 0.92644 1.25806 0.92907 0.93540 1.05968 1.70786 1.43276 1.40175 1.00327 0.83472 0.76790 0.75627 0.73897 1.21408 1.21101 1.21241 1.02235 0.73608 0.72819 0.72664 1.93552 1.67274 1.60331 1.76036 1.93637 1.40410 1.84811 1.74884 1.58672 1.28336 1.65108 1.32431 1.21618 0.85824 0.99732 0.93853 1.22000 1.00050 0.98795 0.96178 1.21873 0.93992 1.01528 0.98718 1.22238 0.90379 0.93768 0.91316 0.86062 1.47610 1.06393 1.24890 1.28754 1.23628 1.02541 0.95553 0.98253 1.23620 0.88375 1.04263 1.04894 1.75135 1.27095 1.04666 1.07051 1.78391 0.90837 1.18455 1.18446 1.21547 0.93340 0.93775 0.92185 0.92767 0.92960 0.91358 0.95649 0.95707 0.92347 0.90827 0.87971 0.90196 0.89284 0.90274 0.90343 0.79462 0.79443 0.88194 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 10.33 59.85 0.62 2.43 16 2 N -0.99 -19.58 3.23 -123.05 -0.40 -19.97 16 3 C 0.25 5.83 4.43 -5.19 -0.02 5.80 16 4 C -0.61 -16.78 9.38 -34.44 -0.32 -17.10 16 5 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 6 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 7 N -0.91 -26.33 13.65 55.43 0.76 -25.57 16 8 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 16 9 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 S 2.78 52.24 6.02 -107.50 -0.65 51.59 16 13 O -0.99 -19.98 15.93 -57.17 -0.91 -20.89 16 14 O -0.95 -21.49 15.81 -57.17 -0.90 -22.39 16 15 N -1.01 -13.38 3.34 -113.27 -0.38 -13.76 16 16 C 0.11 1.26 6.41 -3.48 -0.02 1.24 16 17 C -0.13 -1.10 6.10 -26.39 -0.16 -1.26 16 18 C -0.12 -0.87 4.77 -26.69 -0.13 -1.00 16 19 C 0.13 1.21 3.28 -67.81 -0.22 0.99 16 20 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 21 N -0.28 -2.98 3.26 -54.65 -0.18 -3.15 16 22 C -0.05 -0.39 10.69 -17.05 -0.18 -0.58 16 23 C -0.05 -0.51 12.05 -17.74 -0.21 -0.72 16 24 N -0.27 -3.66 12.41 30.24 0.38 -3.29 16 25 N -0.08 -1.12 13.17 60.35 0.79 -0.33 16 26 C 0.12 1.33 5.98 -3.71 -0.02 1.31 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 29 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 30 H 0.03 0.61 7.48 -51.93 -0.39 0.22 16 31 H 0.03 0.58 7.83 -51.93 -0.41 0.18 16 32 H 0.27 7.48 7.22 -40.82 -0.29 7.18 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 1.35 7.12 -51.93 -0.37 0.98 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.41 7.24 -51.93 -0.38 0.04 16 39 H 0.19 0.79 7.34 -52.49 -0.39 0.40 16 40 H 0.19 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.10 1.26 7.13 -51.93 -0.37 0.89 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -35.82 356.85 -7.97 -43.78 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.00 Total: -3.18 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.78 Total: -8.37 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: 0.97 Total: -66.07 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -1.81 Total: -43.29 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.65 Total: 51.59 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.82 -7.97 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425199832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.949 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds