Wall clock time and date at job start Tue Mar 31 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38808 * 120.75723 * 2 1 4 4 C 1.38120 * 119.29561 * 180.02562 * 3 2 1 5 5 N 1.31897 * 120.84699 * 359.75151 * 4 3 2 6 6 C 1.32317 * 121.64575 * 0.51612 * 5 4 3 7 7 N 1.39747 * 119.69605 * 179.75524 * 6 5 4 8 8 N 1.40075 * 126.13132 * 154.85792 * 7 6 5 9 9 C 1.30862 * 108.44488 * 180.31420 * 8 7 6 10 10 C 1.39761 * 108.51808 * 359.74529 * 9 8 7 11 11 C 1.36183 * 107.88053 * 359.97438 * 10 9 8 12 12 N 1.39129 * 126.30005 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99506 * 0.02577 * 12 11 10 14 14 O 1.21393 * 120.00392 * 0.02562 * 13 12 11 15 15 C 1.49306 * 119.99519 * 179.72225 * 13 12 11 16 16 O 1.21363 * 120.00482 * 0.28194 * 15 13 12 17 17 N 1.34782 * 119.99548 * 180.27486 * 15 13 12 18 18 C 1.46499 * 119.99694 * 180.02562 * 17 15 13 19 19 C 1.50703 * 109.47138 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99953 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99823 * 179.97438 * 19 18 17 22 22 N 1.31508 * 119.99630 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00300 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46830 * 90.00034 * 23 21 19 25 25 H 1.48494 * 109.47302 * 210.00213 * 23 21 19 26 26 H 1.48499 * 109.47130 * 330.00406 * 23 21 19 27 27 C 1.38410 * 120.75635 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47231 * 269.97962 * 1 2 3 29 29 H 1.08994 * 109.46796 * 29.98146 * 1 2 3 30 30 H 1.09007 * 109.47044 * 149.97847 * 1 2 3 31 31 H 1.08000 * 120.35435 * 0.02562 * 3 2 1 32 32 H 1.08000 * 119.57561 * 179.97438 * 4 3 2 33 33 H 1.07999 * 125.73943 * 179.71894 * 9 8 7 34 34 H 1.08001 * 126.06209 * 179.97438 * 10 9 8 35 35 H 0.97001 * 120.00009 * 180.02562 * 12 11 10 36 36 H 0.97000 * 119.99920 * 0.02562 * 17 15 13 37 37 H 1.09000 * 109.47130 * 300.00678 * 18 17 15 38 38 H 1.08998 * 109.47023 * 60.00195 * 18 17 15 39 39 H 0.97006 * 120.00327 * 179.97438 * 22 21 19 40 40 H 1.07991 * 120.44720 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2168 1.1928 0.0000 4 6 3.5975 1.1576 -0.0005 5 7 4.2447 0.0083 0.0039 6 6 3.6039 -1.1493 -0.0012 7 7 4.3307 -2.3429 -0.0014 8 7 3.8837 -3.5821 0.4747 9 6 4.8426 -4.4579 0.3133 10 6 5.9353 -3.8163 -0.2761 11 6 5.6000 -2.5103 -0.4675 12 7 6.4073 -1.5265 -1.0298 13 6 7.6522 -1.8328 -1.4455 14 8 8.0690 -2.9670 -1.3298 15 6 8.5163 -0.7784 -2.0546 16 8 8.0996 0.3555 -2.1706 17 7 9.7593 -1.0860 -2.4754 18 6 10.6073 -0.0514 -3.0725 19 6 11.9360 -0.6504 -3.4557 20 1 12.1292 -1.6971 -3.2732 21 6 12.9046 0.1378 -4.0403 22 7 14.0639 -0.3851 -4.3752 23 14 12.5696 1.9478 -4.3580 24 1 12.9880 2.7435 -3.1761 25 1 13.3363 2.3914 -5.5499 26 1 11.1183 2.1475 -4.6006 27 6 2.2147 -1.1894 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6950 2.1384 0.0004 32 1 4.1544 2.0830 -0.0010 33 1 4.7972 -5.5010 0.5896 34 1 6.8786 -4.2747 -0.5341 35 1 6.0741 -0.6203 -1.1225 36 1 10.0922 -1.9923 -2.3828 37 1 10.1200 0.3497 -3.9612 38 1 10.7644 0.7506 -2.3512 39 1 14.7452 0.1692 -4.7869 40 1 1.6946 -2.1358 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427860266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:58 Heat of formation + Delta-G solvation = 64.075826 kcal Electronic energy + Delta-G solvation = -26609.135156 eV Core-core repulsion = 22619.687145 eV Total energy + Delta-G solvation = -3989.448011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.127 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08699 -40.58440 -40.08777 -38.24315 -35.52893 -34.76888 -34.26594 -33.50303 -32.43194 -30.00040 -29.48470 -28.42031 -28.28905 -25.08208 -24.30813 -23.25850 -22.22077 -21.50016 -20.62106 -19.84227 -19.01243 -17.92266 -17.10566 -16.82661 -16.49565 -16.29212 -16.10190 -15.63209 -15.40516 -15.11566 -14.78537 -14.49637 -14.28197 -14.07111 -13.88727 -13.43573 -13.30234 -13.23844 -13.15634 -13.03700 -12.47850 -12.32183 -12.19639 -11.54310 -11.27231 -11.14791 -10.88567 -10.84663 -10.58833 -10.11853 -10.05456 -10.01524 -9.58853 -9.37571 -8.88747 -8.75349 -8.46199 -8.34401 -6.26948 -4.31038 0.32202 0.71741 1.27207 1.55871 1.98435 2.52495 2.66828 3.21795 3.27697 3.29271 3.34587 3.47181 3.83324 3.89385 4.17088 4.26721 4.31656 4.52399 4.62609 4.72552 4.80776 5.00643 5.04266 5.04833 5.07180 5.25224 5.37893 5.38431 5.47596 5.71693 5.81376 5.85819 6.10858 6.46771 6.56167 6.75053 6.79265 6.88469 6.95433 7.15404 7.21794 7.55272 7.64118 7.93490 8.30871 8.40605 8.72903 9.30154 10.84695 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002686 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.156390 B =10423.628246 C =11955.714854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.187 4.187 4 C 0.142 3.858 5 N -0.519 5.519 6 C 0.373 3.627 7 N -0.342 5.342 8 N -0.284 5.284 9 C 0.084 3.916 10 C -0.277 4.277 11 C 0.333 3.667 12 N -0.619 5.619 13 C 0.515 3.485 14 O -0.486 6.486 15 C 0.500 3.500 16 O -0.532 6.532 17 N -0.661 5.661 18 C 0.218 3.782 19 C -0.549 4.549 20 H 0.084 0.916 21 C 0.080 3.920 22 N -0.887 5.887 23 Si 0.877 3.123 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.261 1.261 27 C -0.161 4.161 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.198 0.802 34 H 0.184 0.816 35 H 0.433 0.567 36 H 0.411 0.589 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.269 0.731 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.187 -0.749 9.696 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.208 4.208 4 C -0.015 4.015 5 N -0.233 5.233 6 C 0.146 3.854 7 N -0.125 5.125 8 N -0.104 5.104 9 C -0.104 4.104 10 C -0.307 4.307 11 C 0.116 3.884 12 N -0.269 5.269 13 C 0.297 3.703 14 O -0.357 6.357 15 C 0.278 3.722 16 O -0.411 6.411 17 N -0.310 5.310 18 C 0.097 3.903 19 C -0.587 4.587 20 H 0.102 0.898 21 C -0.125 4.125 22 N -0.524 5.524 23 Si 0.703 3.297 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.184 4.184 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.161 0.839 32 H 0.188 0.812 33 H 0.215 0.785 34 H 0.201 0.799 35 H 0.275 0.725 36 H 0.248 0.752 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -27.152 -0.410 9.951 28.921 hybrid contribution -0.017 0.850 -0.400 0.940 sum -27.169 0.440 9.550 28.802 Atomic orbital electron populations 1.20857 0.89432 1.03773 1.03299 1.20280 0.97169 0.92060 0.93287 1.22082 0.95363 0.99052 1.04253 1.22593 0.91860 0.94369 0.92656 1.66799 1.41780 0.97643 1.17109 1.17755 0.87873 0.83331 0.96417 1.45810 1.09687 1.06868 1.50184 1.77573 1.22442 0.87214 1.23171 1.24033 0.90584 0.99762 0.96034 1.21847 1.03842 0.91152 1.13906 1.18271 0.83437 0.90626 0.96115 1.42798 1.13187 1.13454 1.57491 1.20789 0.81354 0.89529 0.78678 1.90686 1.72148 1.21037 1.51869 1.19431 0.83790 0.87536 0.81477 1.90746 1.73252 1.20742 1.56341 1.46102 1.12142 1.15964 1.56803 1.19749 0.89923 0.87129 0.93540 1.21035 0.96235 0.98859 1.42528 0.89823 1.24776 0.94563 0.98831 0.94295 1.69870 1.05125 1.36671 1.40720 0.86827 0.79430 0.84960 0.78527 1.19722 1.20762 1.18486 1.21498 0.92059 1.00147 1.04683 0.90045 0.90528 0.90668 0.83885 0.81190 0.78537 0.79927 0.72536 0.75249 0.94808 0.95222 0.92097 0.83536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 10.06 36.00 0.36 -0.15 16 2 C -0.02 -0.15 5.91 -104.35 -0.62 -0.76 16 3 C -0.19 -1.30 9.81 -39.41 -0.39 -1.69 16 4 C 0.14 1.28 11.18 -17.57 -0.20 1.08 16 5 N -0.52 -6.43 8.17 -12.30 -0.10 -6.53 16 6 C 0.37 4.75 7.39 -154.42 -1.14 3.60 16 7 N -0.34 -4.81 3.79 -11.29 -0.04 -4.85 16 8 N -0.28 -3.67 12.09 30.61 0.37 -3.30 16 9 C 0.08 0.94 12.00 -17.40 -0.21 0.73 16 10 C -0.28 -3.81 9.65 -39.75 -0.38 -4.19 16 11 C 0.33 5.02 7.56 -152.57 -1.15 3.86 16 12 N -0.62 -9.69 5.33 -11.73 -0.06 -9.75 16 13 C 0.51 8.76 7.85 -11.65 -0.09 8.67 16 14 O -0.49 -8.46 13.60 5.46 0.07 -8.39 16 15 C 0.50 9.60 7.88 -11.65 -0.09 9.51 16 16 O -0.53 -11.13 16.47 5.49 0.09 -11.04 16 17 N -0.66 -13.51 5.54 -61.96 -0.34 -13.85 16 18 C 0.22 5.15 4.50 -5.19 -0.02 5.13 16 19 C -0.55 -14.74 9.83 -34.44 -0.34 -15.08 16 20 H 0.08 2.36 7.84 -52.49 -0.41 1.95 16 21 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 22 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 23 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 27 C -0.16 -1.61 9.44 -39.24 -0.37 -1.98 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 30 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 31 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.20 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.18 2.59 5.83 -52.49 -0.31 2.29 16 35 H 0.43 6.69 6.28 -40.82 -0.26 6.43 16 36 H 0.41 7.91 7.79 -40.82 -0.32 7.60 16 37 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 38 H 0.03 0.72 7.57 -51.93 -0.39 0.32 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.15 1.36 7.90 -52.49 -0.41 0.94 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -32.60 352.95 -7.50 -40.11 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.17 Total: 10.58 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -4.74 Total: 10.85 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.59 Total: -63.41 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.16 Total: -19.43 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.60 -7.50 -40.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427860266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.185 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds