Wall clock time and date at job start Tue Mar 31 2020 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 114.00317 * 2 1 4 4 C 1.52990 * 109.47331 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47431 * 179.97438 * 4 3 2 6 6 C 1.34950 * 126.03678 * 125.25794 * 5 4 3 7 7 C 1.35317 * 107.74535 * 180.15513 * 6 5 4 8 8 S 1.76197 * 126.04179 * 179.87499 * 7 6 5 9 9 O 1.42094 * 106.40253 * 156.17068 * 8 7 6 10 10 O 1.42105 * 106.40198 * 23.24954 * 8 7 6 11 11 N 1.65596 * 107.21677 * 269.71540 * 8 7 6 12 12 C 1.46498 * 120.00881 * 62.13960 * 11 8 7 13 13 C 1.52992 * 109.47630 * 160.08272 * 12 11 8 14 14 C 1.50703 * 115.55101 * 294.53624 * 13 12 11 15 15 H 1.08000 * 119.99901 * 114.54507 * 14 13 12 16 16 C 1.37878 * 120.00087 * 294.27065 * 14 13 12 17 17 N 1.31511 * 120.00205 * 176.68872 * 16 14 13 18 18 Si 1.86800 * 119.99732 * 356.68994 * 16 14 13 19 19 H 1.48499 * 109.47224 * 92.49192 * 18 16 14 20 20 H 1.48500 * 109.47166 * 212.48775 * 18 16 14 21 21 H 1.48505 * 109.47450 * 332.48943 * 18 16 14 22 22 C 1.53006 * 117.49996 * 80.20865 * 13 12 11 23 23 C 1.53006 * 117.49908 * 148.86833 * 13 12 11 24 24 C 1.39868 * 107.91806 * 359.60771 * 7 6 5 25 25 N 1.30836 * 108.20609 * 0.24527 * 24 7 6 26 26 H 1.09000 * 109.47107 * 60.00100 * 1 2 3 27 27 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47014 * 300.00391 * 1 2 3 29 29 H 1.09000 * 109.46933 * 59.99099 * 3 2 1 30 30 H 1.09002 * 109.46536 * 300.00418 * 3 2 1 31 31 H 1.09004 * 109.47185 * 60.00082 * 4 3 2 32 32 H 1.09001 * 109.46973 * 299.99801 * 4 3 2 33 33 H 1.07997 * 126.13056 * 359.97438 * 6 5 4 34 34 H 0.97006 * 119.99704 * 242.13896 * 11 8 7 35 35 H 1.08999 * 109.46832 * 40.07951 * 12 11 8 36 36 H 1.09003 * 109.46926 * 280.08524 * 12 11 8 37 37 H 0.97002 * 120.00024 * 179.97438 * 17 16 14 38 38 H 1.08998 * 117.49406 * 215.00153 * 22 13 12 39 39 H 1.09003 * 117.49539 * 0.02562 * 22 13 12 40 40 H 1.09000 * 117.49631 * 359.97400 * 23 13 12 41 41 H 1.08997 * 117.49675 * 144.97658 * 23 13 12 42 42 H 1.08004 * 125.89616 * 180.22061 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0295 2.9925 0.8912 7 6 5.3258 4.2669 0.5457 8 16 6.4461 5.3353 1.3870 9 8 6.8736 6.2990 0.4342 10 8 7.3439 4.4950 2.0991 11 7 5.5738 6.1603 2.5275 12 6 4.9075 5.4309 3.6093 13 6 4.6101 6.3900 4.7635 14 6 5.8174 6.9590 5.4634 15 1 6.0233 8.0178 5.4100 16 6 6.6559 6.1287 6.1766 17 7 7.7444 6.6137 6.7328 18 14 6.2456 4.3148 6.3527 19 1 6.9068 3.5499 5.2651 20 1 6.7291 3.8234 7.6680 21 1 4.7748 4.1291 6.2650 22 6 3.3786 7.2890 4.6356 23 6 3.3681 6.1103 5.6123 24 6 4.5901 4.5840 -0.6008 25 7 3.8738 3.5394 -0.9288 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8575 0.6436 -0.8891 32 1 3.8567 0.6439 0.8909 33 1 5.4365 2.4496 1.7314 34 1 5.5039 7.1266 2.4793 35 1 5.5572 4.6294 3.9610 36 1 3.9740 5.0062 3.2400 37 1 8.3341 6.0296 7.2348 38 1 3.4419 8.2920 5.0576 39 1 2.7802 7.1968 3.7292 40 1 2.7627 5.2433 5.3480 41 1 3.4244 6.3376 6.6768 42 1 4.6097 5.5283 -1.1247 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429978399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:40 Heat of formation + Delta-G solvation = -9.035331 kcal Electronic energy + Delta-G solvation = -26479.218410 eV Core-core repulsion = 22589.751261 eV Total energy + Delta-G solvation = -3889.467149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51722 -38.44604 -37.44679 -36.69593 -35.37234 -34.26574 -33.38450 -32.10809 -30.76815 -29.51712 -26.74663 -26.43923 -24.81931 -23.97853 -22.13095 -21.62440 -21.15065 -19.34185 -18.91695 -18.01491 -17.18388 -16.90934 -16.74302 -16.42344 -15.88877 -15.54667 -15.33033 -14.98885 -14.86523 -14.42872 -14.18705 -13.84992 -13.44742 -13.29762 -13.18179 -12.64754 -12.61685 -12.40539 -12.24024 -11.86836 -11.68885 -11.57554 -11.56621 -11.54484 -10.99288 -10.74402 -10.61235 -10.60671 -10.26150 -10.23905 -9.84286 -9.59532 -9.43013 -9.18193 -8.81155 -8.64680 -8.47578 -6.09607 -4.12052 0.84070 1.36476 1.94266 2.17761 3.26930 3.32387 3.39141 3.42171 3.59992 4.08801 4.21710 4.36057 4.38225 4.44059 4.59019 4.72249 4.84659 4.85214 4.87177 4.92657 5.04981 5.15378 5.20606 5.21997 5.37386 5.47939 5.61166 5.85635 5.94959 6.05237 6.10208 6.19187 6.42752 6.43438 6.57002 6.60861 6.69403 7.03705 7.11249 7.20113 7.62653 7.72768 8.48858 8.92196 9.53116 11.02225 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004154 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.806030 B = 6738.616336 C = 7723.547619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.051 3.949 4 C 0.129 3.871 5 N -0.363 5.363 6 C 0.181 3.819 7 C -0.810 4.810 8 S 2.721 3.279 9 O -0.968 6.968 10 O -0.959 6.959 11 N -1.091 6.091 12 C 0.153 3.847 13 C -0.006 4.006 14 C -0.486 4.486 15 H 0.078 0.922 16 C 0.083 3.917 17 N -0.893 5.893 18 Si 0.853 3.147 19 H -0.265 1.265 20 H -0.291 1.291 21 H -0.250 1.250 22 C -0.181 4.181 23 C -0.189 4.189 24 C 0.138 3.862 25 N -0.296 5.296 26 H 0.044 0.956 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.194 0.806 34 H 0.421 0.579 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 -11.194 -13.307 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.008 3.992 5 N -0.142 5.142 6 C 0.028 3.972 7 C -0.907 4.907 8 S 2.806 3.194 9 O -0.958 6.958 10 O -0.949 6.949 11 N -0.852 5.852 12 C 0.027 3.973 13 C -0.009 4.009 14 C -0.523 4.523 15 H 0.096 0.904 16 C -0.120 4.120 17 N -0.529 5.529 18 Si 0.680 3.320 19 H -0.190 1.190 20 H -0.218 1.218 21 H -0.174 1.174 22 C -0.218 4.218 23 C -0.228 4.228 24 C -0.051 4.051 25 N -0.115 5.115 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.210 0.790 34 H 0.257 0.743 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.774 -12.233 -14.223 22.696 hybrid contribution -0.472 -0.383 0.678 0.911 sum -13.246 -12.616 -13.545 22.761 Atomic orbital electron populations 1.22791 0.79828 1.03156 1.00470 1.87777 1.20679 1.26784 1.95625 1.22638 0.92284 0.85473 1.02268 1.21557 0.92974 0.78798 1.05917 1.48983 1.32315 1.12068 1.20880 1.22582 0.88354 0.93098 0.93127 1.31982 1.30591 1.11626 1.16469 1.01030 0.72848 0.72990 0.72500 1.93536 1.79945 1.60256 1.62109 1.93594 1.59841 1.69215 1.72205 1.55016 1.71678 1.19006 1.39493 1.20992 0.94488 0.94608 0.87241 1.19504 0.89769 0.96974 0.94629 1.20210 1.05693 0.95979 1.30453 0.90377 1.24901 0.94165 0.98405 0.94533 1.69870 1.12336 1.36213 1.34488 0.87214 0.80328 0.86533 0.77920 1.19001 1.21754 1.17411 1.22800 1.03088 0.95747 1.00137 1.23059 1.03835 0.98264 0.97598 1.23565 0.90901 0.97902 0.92749 1.77368 1.24219 0.96774 1.13154 0.93707 0.89115 0.93664 0.92344 0.91443 0.88199 0.87064 0.78956 0.74302 0.91598 0.94166 0.92445 0.89567 0.90896 0.91353 0.89308 0.78367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.40 10.70 -35.23 -0.38 -3.78 16 3 C 0.05 0.43 6.12 37.15 0.23 0.66 16 4 C 0.13 1.07 6.88 -4.05 -0.03 1.04 16 5 N -0.36 -4.15 3.68 -61.37 -0.23 -4.38 16 6 C 0.18 2.24 11.19 -17.22 -0.19 2.04 16 7 C -0.81 -11.37 6.09 -40.01 -0.24 -11.61 16 8 S 2.72 46.86 5.87 -107.50 -0.63 46.22 16 9 O -0.97 -18.02 17.87 -57.17 -1.02 -19.04 16 10 O -0.96 -19.92 17.36 -57.17 -0.99 -20.91 16 11 N -1.09 -19.29 5.88 -10.62 -0.06 -19.35 16 12 C 0.15 2.91 5.66 -4.05 -0.02 2.89 16 13 C -0.01 -0.13 0.85 -155.66 -0.13 -0.27 16 14 C -0.49 -12.86 9.31 -34.44 -0.32 -13.18 16 15 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 16 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 17 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 18 Si 0.85 20.55 24.88 -169.99 -4.23 16.32 16 19 H -0.26 -6.39 7.02 56.52 0.40 -5.99 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.25 -5.43 5.80 56.52 0.33 -5.10 16 22 C -0.18 -3.30 9.96 -26.69 -0.27 -3.56 16 23 C -0.19 -3.65 8.14 -26.69 -0.22 -3.87 16 24 C 0.14 1.79 11.81 -17.37 -0.21 1.58 16 25 N -0.30 -3.83 12.42 30.62 0.38 -3.45 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.26 8.14 -51.92 -0.42 -0.17 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.19 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.42 7.05 8.69 -34.47 -0.30 6.75 16 35 H 0.07 1.36 4.52 -51.93 -0.23 1.13 16 36 H 0.04 0.64 8.09 -51.93 -0.42 0.22 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.20 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -35.23 368.32 -7.31 -42.53 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.08 Total: 7.06 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -0.39 Total: -20.72 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.87 Total: -53.25 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -2.39 Total: -43.73 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.23 Total: 16.32 kcal Atomic # 16 Polarization: 46.86 SS G_CDS: -0.63 Total: 46.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.23 -7.31 -42.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429978399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.497 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds